Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016280

Physical Location & Seq

Genomic Coordinates Forward (+)

2753335 .. 2761513

Gene Structure 8179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTCCGTACTTCTCCATCACTCACAAACCACATCGCTAATTATACTCCTTTCATCATTTTTCTCCCTCCTCAAATTTGTTTCTTGCGATTCCAATTCCCAGAATCACCCGCTTCACTACATCCACCATTACTGTTCCCAAGAATACAATCTCACTGACAACCCGGGGTTCCACGACAACGTCAACATCCTCCTCTCCGATCTCACCTCCAAATCTTCTGGATCCAGCTTCTACAACTCCACTGCCGGAGACGACCACGAAAAAGTCTATGCTCTTTACCTCTGTCGAGGCGACATTAGCTCTCAAGTTTGCCATAACTGCATCGACCATGCAGCTCAAACCCTCCGGGAAAACTGCACCGACTTCCAAGACACCAACGTGTATTATGAGGAGTGCATGTTGCGATATTCAAACCGTTCCATTTTTGCCACAGAGCAGGAGCTTCCATTCCGATTTTGGTGCAGCGTGAAAAAGGTTTCCGACATCGCTACCAGTGATTTCAATCAGAGCCTGACCAAGTTGATGGGCTGGCTTGTGGATAAGGCCGCGTTTGGTAATACAACTCCCATTCATTTCTCGACAGGGGAAGCAAATACGAAAACCGGTGATAATGGCACGTCGTGGTTGTATGGCTTGATGCAGTGCACACCTGATATAACTGGGAGTGATTGCGAAAAATGTTTGAAGGCGGCTATCGGCAGTTACCAGGAGTTCTGCGCCGAAAGAATGTGGGCGATGATTTTAGCCCCTAGTTGTCAGTTGCGGTATAATACAAGCCCTTTTATGAAGACAGAAAAACCCGCCATGCCAAAGAGTTCTAGTGATGCTGACTACTGCTGGAGCTGTAATACTACTACTAATGCCACCACCACCTACAAACAAAACCTCAACACACTACTCGTCTCTTTGTCTTCCAACAACCAAGCCAACTACGGGTTCCTCAATTTGTCTCTGGGAACTGGCACCGACAAAGTGAATGTAATTGCACTCTGTAGAGGAGACCTTGCCCAAGACCAGTGTCGTAGTTGTTACGGCCAAGCCAACATCTATCTCTCACAGAATTGCTCTAATCATCACGAAGCAATCATATGGGCCCAGGGTTGCACTGTTCGATACTCGAACATCACCATGTTCGGAATCAAAGAAGACGAGCCCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

386

Amino Acids

43.18

Weight (kDa)

5.57

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	45 - 139	1.5e-21	Salt stress response/antifungal
Stress-antifung	PF01657	161 - 258	6.6e-12	Salt stress response/antifungal
Stress-antifung	PF01657	282 - 374	5.1e-21	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02832
malus_domestica	MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica	Prupe.4G028400_v2.0.a1
pyrus_communis	pycom10g26370
rosa_chinensis	RchiOBHm_Chr5g0004281
rosa_laevigata	RLG00000031218
rosa_multiflora	Rmu_co8460447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071390
rosa_rugosa	Rorug04G0411100
rosa_samantha	Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana	Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	962
AccII	CGCG	1 cut(s)	548
AciI	CCGC	6 cut(s)	110, 546, 689, 763, 801, 1155
AclWI	GGATC	2 cut(s)	216, 229
AcoI	YGGCCR	1 cut(s)	1033
AcsI	RAATTY	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	621
AfaI	GTAC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	933
AflIII	ACRYGT	1 cut(s)	378
AgeI	ACCGGT	1 cut(s)	602
AgsI	TTSAA	3 cut(s)	411, 502, 685
AjiI	CACGTC	1 cut(s)	618
AjnI	CCWGG	2 cut(s)	705, 1095
AjuI	GAANNNNNNNTTGG	2 cut(s)	920, 952
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	5 cut(s)	228, 300, 335, 442, 843
AluI	AGCT	5 cut(s)	228, 300, 335, 442, 843
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	4 cut(s)	243, 907, 954, 993
Alw44I	GTGCAC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	216, 229
AlwNI	CAGNNNCTG	1 cut(s)	511
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	3 cut(s)	543, 1033, 1092
ApaI	GGGCCC	1 cut(s)	1096
ApaLI	GTGCAC	1 cut(s)	643
ApeKI	GCWGC	2 cut(s)	332, 462
ApoI	RAATTY	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	2 cut(s)	1092, 1093
AsuC2I	CCSGG	3 cut(s)	164, 165, 347
AsuHPI	GGTGA	4 cut(s)	98, 196, 617, 1117
AvaI	CYCGRG	1 cut(s)	163
BaeGI	GKGCMC	2 cut(s)	647, 1096
BamHI	GGATCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	962
BanII	GRGCYC	2 cut(s)	1096, 1155
BbsI	GAAGAC	3 cut(s)	794, 903, 1152
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	2 cut(s)	344, 474
BccI	CCATC	2 cut(s)	24, 517
BceAI	ACGGC	1 cut(s)	1048
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	2 cut(s)	707, 1097
BcnI	CCSGG	3 cut(s)	164, 165, 347
BcoDI	GTCTC	4 cut(s)	243, 907, 954, 993
BfaI	CTAG	2 cut(s)	750, 819
BfmI	CTRYAG	1 cut(s)	991
BisI	GCNGC	4 cut(s)	333, 463, 546, 690
BlsI	GCNGC	4 cut(s)	334, 464, 547, 691
Bme1390I	CCNGG	5 cut(s)	164, 165, 347, 707, 1097
BmeT110I	CYCGRG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	618
BmgT120I	GGNCC	2 cut(s)	1092, 1093
BmiI	GGNNCC	5 cut(s)	170, 223, 938, 964, 1094
BmrFI	CCNGG	5 cut(s)	164, 165, 347, 707, 1097
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	3 cut(s)	330, 627, 814
BmuI	ACTGGG	1 cut(s)	669
BoxI	GACNNNNGTC	1 cut(s)	1017
BpiI	GAAGAC	3 cut(s)	794, 903, 1152
BpmI	CTGGAG	1 cut(s)	859
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	164, 165, 347
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	993
BsaJI	CCNNGG	4 cut(s)	163, 164, 1095, 1096
BsaWI	WCCGGW	1 cut(s)	602
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	933
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	4 cut(s)	492, 664, 964, 1015
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	707, 1097
BseDI	CCNNGG	4 cut(s)	163, 164, 1095, 1096
BseGI	GGATG	2 cut(s)	120, 186
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	933
BseNI	ACTGG	4 cut(s)	492, 664, 964, 1015
BseRI	GAGGAG	4 cut(s)	59, 182, 404, 1011
BseSI	GKGCMC	2 cut(s)	647, 1096
BseXI	GCAGC	2 cut(s)	344, 474
BsgI	GTGCAG	2 cut(s)	340, 481
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	3 cut(s)	545, 1035, 1094
BshNI	GGYRCC	1 cut(s)	962
BshTI	ACCGGT	1 cut(s)	602
BsiHKAI	GWGCWC	1 cut(s)	647
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	4 cut(s)	164, 246, 346, 603
BslI	CCNNNNNNNGG	1 cut(s)	933
BsmAI	GTCTC	4 cut(s)	243, 907, 954, 993
BsmBI	CGTCTC	2 cut(s)	243, 907
BsnI	GGCC	3 cut(s)	545, 1035, 1094
Bso31I	GGTCTC	1 cut(s)	993
BsoBI	CYCGRG	1 cut(s)	163
Bsp120I	GGGCCC	1 cut(s)	1092
Bsp1286I	GDGCHC	3 cut(s)	647, 1096, 1155
Bsp143I	GATC	2 cut(s)	199, 221
BspACI	CCGC	6 cut(s)	110, 546, 689, 763, 801, 1155
BspANI	GGCC	3 cut(s)	545, 1035, 1094
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	5 cut(s)	170, 223, 938, 964, 1094
BspPI	GGATC	2 cut(s)	216, 229
BspT107I	GGYRCC	1 cut(s)	962
BspTNI	GGTCTC	1 cut(s)	993
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	4 cut(s)	492, 664, 964, 1015
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	4 cut(s)	163, 164, 1095, 1096
BssMI	GATC	2 cut(s)	199, 221
Bst2UI	CCWGG	2 cut(s)	707, 1097
Bst4CI	ACNGT	3 cut(s)	134, 416, 1108
BstC8I	GCNNGC	2 cut(s)	530, 1155
BstDEI	CTNAG	1 cut(s)	1158
BstF5I	GGATG	2 cut(s)	120, 186
BstFNI	CGCG	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	2 cut(s)	202, 224
BstMAI	GTCTC	4 cut(s)	243, 907, 954, 993
BstMBI	GATC	2 cut(s)	199, 221
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 318
BstNI	CCWGG	2 cut(s)	707, 1097
BstNSI	RCATGY	1 cut(s)	400
BstPAI	GACNNNNGTC	1 cut(s)	1017
BstSCI	CCNGG	5 cut(s)	162, 163, 345, 705, 1095
BstSFI	CTRYAG	1 cut(s)	991
BstSLI	GKGCMC	2 cut(s)	647, 1096
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	344, 474
BstV2I	GAAGAC	3 cut(s)	794, 903, 1152
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	545, 1035, 1094
BtgZI	GCGATG	3 cut(s)	18, 469, 749
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	120, 186
BtsI	GCAGTG	2 cut(s)	240, 647
BtsIMutI	CAGTG	6 cut(s)	153, 240, 499, 647, 1022, 1104
Cac8I	GCNNGC	2 cut(s)	530, 1155
CaiI	CAGNNNCTG	1 cut(s)	511
CfoI	GCGC	1 cut(s)	719
Cfr10I	RCCGGY	1 cut(s)	602
Cfr13I	GGNCC	2 cut(s)	1092, 1093
Cfr9I	CCCGGG	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	8
CspAI	ACCGGT	1 cut(s)	602
CviAII	CATG	4 cut(s)	329, 397, 805, 1129
CviQI	GTAC	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	1158
DpnI	GATC	2 cut(s)	201, 223
DpnII	GATC	2 cut(s)	199, 221
DraIII	CACNNNGTG	1 cut(s)	621
EaeI	YGGCCR	1 cut(s)	1033
Eco24I	GRGCYC	2 cut(s)	1096, 1155
Eco31I	GGTCTC	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	705, 1095
EcoT38I	GRGCYC	2 cut(s)	1096, 1155
Esp3I	CGTCTC	2 cut(s)	243, 907
FaeI	CATG	4 cut(s)	332, 400, 808, 1132
FatI	CATG	4 cut(s)	328, 396, 804, 1128
FauI	CCCGC	2 cut(s)	117, 808
FauNDI	CATATG	1 cut(s)	1088
Fnu4HI	GCNGC	4 cut(s)	333, 463, 546, 690
FokI	GGATG	2 cut(s)	107, 173
FriOI	GRGCYC	2 cut(s)	1096, 1155
Fsp4HI	GCNGC	4 cut(s)	333, 463, 546, 690
FspBI	CTAG	2 cut(s)	750, 819
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	4 cut(s)	333, 463, 546, 690
GsuI	CTGGAG	1 cut(s)	859
HaeIII	GGCC	3 cut(s)	545, 1035, 1094
HapII	CCGG	4 cut(s)	164, 246, 346, 603
HhaI	GCGC	1 cut(s)	719
Hin1II	CATG	4 cut(s)	332, 400, 808, 1132
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	89, 103, 1137
HpaII	CCGG	4 cut(s)	164, 246, 346, 603
HphI	GGTGA	4 cut(s)	98, 196, 617, 1117
Hpy166II	GTNNAC	2 cut(s)	184, 645
Hpy188I	TCNGA	5 cut(s)	199, 452, 481, 507, 1136
Hpy188III	TCNNGA	3 cut(s)	219, 577, 1076
Hpy8I	GTNNAC	2 cut(s)	184, 645
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	3 cut(s)	134, 416, 1108
HpyCH4IV	ACGT	3 cut(s)	180, 378, 617
HpyCH4V	TGCA	9 cut(s)	321, 332, 357, 396, 462, 640, 645, 986, 1104
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 318
HpyF3I	CTNAG	1 cut(s)	1158
HpySE526I	ACGT	3 cut(s)	180, 378, 617
Hsp92II	CATG	4 cut(s)	332, 400, 808, 1132
HspAI	GCGC	1 cut(s)	717
Kzo9I	GATC	2 cut(s)	199, 221
LmnI	GCTCC	2 cut(s)	439, 840
Lsp1109I	GCAGC	2 cut(s)	344, 474
LweI	GCATC	3 cut(s)	330, 627, 814
MaeI	CTAG	2 cut(s)	750, 819
MaeII	ACGT	3 cut(s)	180, 378, 617
MaeIII	GTNAC	2 cut(s)	701, 1028
MalI	GATC	2 cut(s)	201, 223
MboI	GATC	2 cut(s)	199, 221
MboII	GAAGA	4 cut(s)	207, 799, 903, 1157
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	3 cut(s)	647, 1096, 1155
MluCI	AATT	6 cut(s)	39, 74, 94, 943, 981, 1060
MmeI	TCCRAC	2 cut(s)	504, 939
MslI	CAYNNNNRTG	2 cut(s)	377, 1127
MspI	CCGG	4 cut(s)	164, 246, 346, 603
MspR9I	CCNGG	5 cut(s)	164, 165, 347, 707, 1097
MvaI	CCWGG	2 cut(s)	707, 1097
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	297, 318
NciI	CCSGG	3 cut(s)	164, 165, 347
NdeI	CATATG	1 cut(s)	1088
NdeII	GATC	2 cut(s)	199, 221
NlaIII	CATG	4 cut(s)	332, 400, 808, 1132
NlaIV	GGNNCC	5 cut(s)	170, 223, 938, 964, 1094
NspI	RCATGY	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	377
PasI	CCCWGGG	1 cut(s)	1096
PfeI	GAWTC	3 cut(s)	89, 103, 1137
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	345
PinAI	ACCGGT	1 cut(s)	602
PkrI	GCNGC	4 cut(s)	334, 464, 547, 691
PshAI	GACNNNNGTC	1 cut(s)	1017
Psp6I	CCWGG	2 cut(s)	705, 1095
PspGI	CCWGG	2 cut(s)	705, 1095
PspN4I	GGNNCC	5 cut(s)	170, 223, 938, 964, 1094
PspOMI	GGGCCC	1 cut(s)	1092
PspPI	GGNCC	2 cut(s)	1092, 1093
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	9
RsaNI	GTAC	1 cut(s)	8
RseI	CAYNNNNRTG	2 cut(s)	377, 1127
SatI	GCNGC	4 cut(s)	333, 463, 546, 690
Sau3AI	GATC	2 cut(s)	199, 221
Sau96I	GGNCC	2 cut(s)	1092, 1093
ScrFI	CCNGG	5 cut(s)	164, 165, 347, 707, 1097
SduI	GDGCHC	3 cut(s)	647, 1096, 1155
SfaNI	GCATC	3 cut(s)	330, 627, 814
SfcI	CTRYAG	1 cut(s)	991
SmaI	CCCGGG	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	377, 1127
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	6 cut(s)	39, 74, 94, 943, 981, 1060
SsiI	CCGC	6 cut(s)	110, 546, 689, 763, 801, 1155
SspMI	CTAG	2 cut(s)	750, 819
StyD4I	CCNGG	5 cut(s)	162, 163, 345, 705, 1095
TaaI	ACNGT	3 cut(s)	134, 416, 1108
TaiI	ACGT	3 cut(s)	183, 381, 620
TaqI	TCGA	5 cut(s)	286, 324, 578, 1111, 1118
TasI	AATT	6 cut(s)	39, 74, 94, 943, 981, 1060
TauI	GCSGC	2 cut(s)	548, 692
TfiI	GAWTC	3 cut(s)	89, 103, 1137
TscAI	CASTG	6 cut(s)	160, 247, 499, 647, 1022, 1111
TseI	GCWGC	2 cut(s)	332, 462
TspDTI	ATGAA	3 cut(s)	42, 560, 800
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	6 cut(s)	160, 247, 499, 647, 1022, 1111
Tth111I	GACNNNGTC	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	643
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XmaI	CCCGGG	1 cut(s)	163
XspI	CTAG	2 cut(s)	750, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.