Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8460447.1

Orthogroup ID

OG0016280

Physical Location & Seq

Genomic Coordinates Forward (+)

1295 .. 1834

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8460447.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtccgcacttctccatcactcacaaaccacatcgctaattatactcctttcatcatttttctccctcctcaaatttgtttcttgcgattccaattcccagaatcacccgcttcactacatccaccattactgttcccaagaatacaatctcactgacaacccggggttccacgacaacgtcgacatcctcctctccgatctcacctccaaatcttctggatccagcttctacaactccacggccggagacgaccacgaaaaagtctatgctctttacctctgtcgaggcgacattagctctcaagtttgccataactgcatcgaccatgcagctcaaaccctccgggaaaactgcaccgacttccaagacaccaccgtgtattatgaggagtgcatgttgcgatattcaaaccgttccattttcgccacggagcaggagcttccatttcgattttggtgcagcgtgaaaaaggtttccgacaacgctaccgatgattttaatcagagtctgaccaagttgatgggctggcttgtggat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

5.17

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02832
malus_domestica	MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica	Prupe.4G028400_v2.0.a1
pyrus_communis	pycom10g26370
rosa_chinensis	RchiOBHm_Chr5g0004281
rosa_laevigata	RLG00000031218
rosa_multiflora	Rmu_co8460447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071390
rosa_rugosa	Rorug04G0411100
rosa_samantha	Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana	Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	2 cut(s)	6, 110
AclWI	GGATC	2 cut(s)	216, 229
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	411
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	4 cut(s)	228, 300, 335, 442
AluI	AGCT	4 cut(s)	228, 300, 335, 442
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	2 cut(s)	216, 229
AlwNI	CAGNNNCTG	1 cut(s)	511
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	2 cut(s)	332, 462
ApoI	RAATTY	1 cut(s)	74
AsuC2I	CCSGG	3 cut(s)	164, 165, 347
AsuHPI	GGTGA	2 cut(s)	98, 196
AvaI	CYCGRG	1 cut(s)	163
BamHI	GGATCC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	344, 474
BccI	CCATC	2 cut(s)	24, 517
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BcnI	CCSGG	3 cut(s)	164, 165, 347
BcoDI	GTCTC	1 cut(s)	243
BisI	GCNGC	2 cut(s)	333, 463
BlsI	GCNGC	2 cut(s)	334, 464
Bme1390I	CCNGG	3 cut(s)	164, 165, 347
BmeT110I	CYCGRG	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	170, 223
BmrFI	CCNGG	3 cut(s)	164, 165, 347
BmsI	GCATC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	164, 165, 347
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	163, 164, 240, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse8I	GATNNNNATC	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	163, 164, 240, 429
BseGI	GGATG	2 cut(s)	120, 186
BseJI	GATNNNNATC	1 cut(s)	501
BseRI	GAGGAG	3 cut(s)	59, 182, 404
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	344, 474
BsgI	GTGCAG	2 cut(s)	340, 481
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	164, 246, 346
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	199, 221
BspACI	CCGC	2 cut(s)	6, 110
BspANI	GGCC	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	170, 223
BspPI	GGATC	2 cut(s)	216, 229
BssECI	CCNNGG	4 cut(s)	163, 164, 240, 429
BssMI	GATC	2 cut(s)	199, 221
Bst4CI	ACNGT	3 cut(s)	134, 379, 416
BstC8I	GCNNGC	1 cut(s)	530
BstDSI	CCRYGG	2 cut(s)	240, 429
BstF5I	GGATG	2 cut(s)	120, 186
BstKTI	GATC	2 cut(s)	202, 224
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	199, 221
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 318
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	3 cut(s)	162, 163, 345
BstV1I	GCAGC	2 cut(s)	344, 474
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	221
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	245
BtgI	CCRYGG	2 cut(s)	240, 429
BtgZI	GCGATG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	120, 186
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	511
Cfr9I	CCCGGG	1 cut(s)	163
CviAII	CATG	2 cut(s)	329, 397
CviJI	RGCY	7 cut(s)	228, 245, 300, 335, 442, 528, 532
CviKI_1	RGCY	7 cut(s)	228, 245, 300, 335, 442, 528, 532
DpnI	GATC	2 cut(s)	201, 223
DpnII	GATC	2 cut(s)	199, 221
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
EclXI	CGGCCG	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	2 cut(s)	332, 400
FaiI	YATR	6 cut(s)	44, 270, 315, 330, 387, 398
FatI	CATG	2 cut(s)	328, 396
FauI	CCCGC	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	333, 463
FokI	GGATG	2 cut(s)	107, 173
Fsp4HI	GCNGC	2 cut(s)	333, 463
GluI	GCNGC	2 cut(s)	333, 463
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	3 cut(s)	164, 246, 346
Hin1II	CATG	2 cut(s)	332, 400
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	89, 103, 508
HpaII	CCGG	3 cut(s)	164, 246, 346
HphI	GGTGA	2 cut(s)	98, 196
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	4 cut(s)	199, 481, 507, 513
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	1 cut(s)	185
HpyCH4III	ACNGT	3 cut(s)	134, 379, 416
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	321, 332, 357, 396, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 318
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	332, 400
Kzo9I	GATC	2 cut(s)	199, 221
LmnI	GCTCC	2 cut(s)	433, 439
LpnPI	CCDG	8 cut(s)	113, 177, 204, 238, 259, 359, 422, 514
Lsp1109I	GCAGC	2 cut(s)	344, 474
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	1 cut(s)	180
MalI	GATC	2 cut(s)	201, 223
MboI	GATC	2 cut(s)	199, 221
MboII	GAAGA	1 cut(s)	207
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	3 cut(s)	39, 74, 94
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	9 cut(s)	77, 80, 200, 203, 217, 281, 290, 353, 382
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	3 cut(s)	164, 246, 346
MspR9I	CCNGG	3 cut(s)	164, 165, 347
MwoI	GCNNNNNNNGC	2 cut(s)	297, 318
NciI	CCSGG	3 cut(s)	164, 165, 347
NdeII	GATC	2 cut(s)	199, 221
NlaIII	CATG	2 cut(s)	332, 400
NlaIV	GGNNCC	2 cut(s)	170, 223
NspI	RCATGY	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	89, 103
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	334, 464
PleI	GAGTC	1 cut(s)	516
PpsI	GAGTC	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	170, 223
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	377
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	2 cut(s)	333, 463
Sau3AI	GATC	2 cut(s)	199, 221
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	3 cut(s)	164, 165, 347
SetI	ASST	8 cut(s)	183, 209, 230, 282, 302, 337, 444, 477
SfaNI	GCATC	1 cut(s)	330
SmaI	CCCGGG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	3 cut(s)	39, 74, 94
SsiI	CCGC	2 cut(s)	6, 110
StyD4I	CCNGG	3 cut(s)	162, 163, 345
TaaI	ACNGT	3 cut(s)	134, 379, 416
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	4 cut(s)	183, 286, 324, 451
TasI	AATT	3 cut(s)	39, 74, 94
TfiI	GAWTC	2 cut(s)	89, 103
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	1 cut(s)	160
TseI	GCWGC	2 cut(s)	332, 462
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	446
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XmaI	CCCGGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.