Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016280

Physical Location & Seq

Genomic Coordinates Forward (+)

3084313 .. 3085488

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031218

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCCATACTTCTCCGTCACTCACAAACCACATCGCTAATTATACTCCTTTCATCATTTTTCTCCCTCCTCAAATTTGTTTCTTGCGATTCCAATTCCCAGAATCACCCGCTTCACTACATCCACCATTACTGTTCCCAAGAATACAATCTCACTGACAACCCGGGGTTCCACGACAACGTCGACATCCTCCTCTCCGATCTCACCTCCAAATCTTCTGGATCCAGCTTCTACAACTCCACGGCCGGAGACGACCACGAAAAAGTCTATGCTCTTTACCTCTGTCGAGGCGACATTAGCTCTCAAGTTTGCCATAACTGCATCGACCATGCAGCTCAAACCCTCCGGGAAAACTGCACCGACTTCCAAGACACCACCGTGTATTATGAGGAGTGCATGTTGCGATATTCAAACCGTTCCATTTTCGCCACAGAGCAGGAGCTTCCATTTCGATTTTGGTGCAGCGTGAAAAAGGTTTCCGACAACGCTACCAGTGATTTCAATCAGAGCCTGACCAAGTTGATGGGCTGGCTTGTGGATAAGGCCGCGTTTGGTAATACAACTCCTATTCATTTCTCGACAGGGGAAGCAAATACGAAAACCGGTGATAATGGCACGTCGTGGTTGTATGGCTTGATGCAGTGCACGCCTGATATAACTGGGAGTGATTGCGAAAAATGTTTGAAGGCGGCTATCGGCAGTTACCAGGAGTTCTGCGCCGAAAGAATGTGGGCGATGATTTTGGCCCCTAGTTGTCAGTTACGGTATAATACAAGCCCTTTTATGAAGACAGGAAAACCCGCAATGCCAAAGAGTTCAAATGATAGAAGAGGGAAGAACTACGAATCATATGTTGCTTTTGCAGCAGTGTTGCTTCTGTCCACCATATCTGTTGTACGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

302

Amino Acids

33.81

Weight (kDa)

6.04

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	45 - 139	8.8e-22	Salt stress response/antifungal
Stress-antifung	PF01657	154 - 258	1.5e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02832
malus_domestica	MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica	Prupe.4G028400_v2.0.a1
pyrus_communis	pycom10g26370
rosa_chinensis	RchiOBHm_Chr5g0004281
rosa_laevigata	RLG00000031218
rosa_multiflora	Rmu_co8460447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071390
rosa_rugosa	Rorug04G0411100
rosa_samantha	Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana	Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	1 cut(s)	548
AciI	CCGC	4 cut(s)	110, 546, 689, 801
AclWI	GGATC	2 cut(s)	216, 229
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	74
AdeI	CACNNNGTG	1 cut(s)	621
AfaI	GTAC	1 cut(s)	897
AgeI	ACCGGT	1 cut(s)	602
AgsI	TTSAA	4 cut(s)	411, 502, 685, 819
AjiI	CACGTC	1 cut(s)	618
AjnI	CCWGG	1 cut(s)	705
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	4 cut(s)	228, 300, 335, 442
AluI	AGCT	4 cut(s)	228, 300, 335, 442
Alw21I	GWGCWC	1 cut(s)	647
Alw26I	GTCTC	1 cut(s)	243
Alw44I	GTGCAC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	216, 229
AlwNI	CAGNNNCTG	1 cut(s)	511
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	3 cut(s)	243, 543, 744
ApaLI	GTGCAC	1 cut(s)	643
ApeKI	GCWGC	3 cut(s)	332, 462, 863
ApoI	RAATTY	1 cut(s)	74
AsiGI	ACCGGT	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	1 cut(s)	745
AsuC2I	CCSGG	3 cut(s)	164, 165, 347
AsuHPI	GGTGA	3 cut(s)	98, 196, 617
AvaI	CYCGRG	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	647
BamHI	GGATCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	1 cut(s)	647
BbvI	GCAGC	3 cut(s)	344, 474, 875
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	441, 475
BciT130I	CCWGG	1 cut(s)	707
BcnI	CCSGG	3 cut(s)	164, 165, 347
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	750
BisI	GCNGC	5 cut(s)	333, 463, 546, 690, 864
BlsI	GCNGC	5 cut(s)	334, 464, 547, 691, 865
Bme1390I	CCNGG	4 cut(s)	164, 165, 347, 707
BmeT110I	CYCGRG	1 cut(s)	163
BmgBI	CACGTC	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	745
BmiI	GGNNCC	3 cut(s)	170, 223, 747
BmrFI	CCNGG	4 cut(s)	164, 165, 347, 707
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	2 cut(s)	330, 627
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	794
BpuEI	CTTGAG	1 cut(s)	288
BpuMI	CCSGG	3 cut(s)	164, 165, 347
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	163, 164, 240
BsaWI	WCCGGW	1 cut(s)	602
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	2 cut(s)	492, 664
Bse3DI	GCAATG	1 cut(s)	810
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	707
BseDI	CCNNGG	3 cut(s)	163, 164, 240
BseGI	GGATG	2 cut(s)	120, 186
BseJI	GATNNNNATC	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	810
BseNI	ACTGG	2 cut(s)	492, 664
BseRI	GAGGAG	3 cut(s)	59, 182, 404
BseSI	GKGCMC	1 cut(s)	647
BseX3I	CGGCCG	1 cut(s)	243
BseXI	GCAGC	3 cut(s)	344, 474, 875
BsgI	GTGCAG	2 cut(s)	340, 481
Bsh1236I	CGCG	1 cut(s)	548
Bsh1285I	CGRYCG	1 cut(s)	246
BshFI	GGCC	3 cut(s)	245, 545, 746
BshTI	ACCGGT	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	647
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	4 cut(s)	164, 246, 346, 603
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	245, 545, 746
BsoBI	CYCGRG	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	647
Bsp143I	GATC	2 cut(s)	199, 221
BspACI	CCGC	4 cut(s)	110, 546, 689, 801
BspANI	GGCC	3 cut(s)	245, 545, 746
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	3 cut(s)	170, 223, 747
BspPI	GGATC	2 cut(s)	216, 229
BsrDI	GCAATG	1 cut(s)	810
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	492, 664
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	3 cut(s)	163, 164, 240
BssMI	GATC	2 cut(s)	199, 221
Bst2UI	CCWGG	1 cut(s)	707
Bst4CI	ACNGT	4 cut(s)	134, 379, 416, 765
Bst6I	CTCTTC	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	899
BstC8I	GCNNGC	2 cut(s)	530, 647
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	120, 186
BstFNI	CGCG	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	2 cut(s)	202, 224
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	199, 221
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 318, 646, 863
BstNI	CCWGG	1 cut(s)	707
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	4 cut(s)	162, 163, 345, 705
BstSLI	GKGCMC	1 cut(s)	647
BstUI	CGCG	1 cut(s)	548
BstV1I	GCAGC	3 cut(s)	344, 474, 875
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	221
BstZI	CGGCCG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	245, 545, 746
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	2 cut(s)	18, 749
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	120, 186
BtsI	GCAGTG	2 cut(s)	647, 873
BtsIMutI	CAGTG	4 cut(s)	153, 499, 647, 873
Cac8I	GCNNGC	2 cut(s)	530, 647
CaiI	CAGNNNCTG	1 cut(s)	511
CfoI	GCGC	1 cut(s)	719
Cfr10I	RCCGGY	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	745
Cfr9I	CCCGGG	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	896
CspAI	ACCGGT	1 cut(s)	602
CviAII	CATG	3 cut(s)	329, 397, 903
CviQI	GTAC	1 cut(s)	896
DpnI	GATC	2 cut(s)	201, 223
DpnII	GATC	2 cut(s)	199, 221
DraIII	CACNNNGTG	1 cut(s)	621
EaeI	YGGCCR	1 cut(s)	243
EagI	CGGCCG	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	823
EarI	CTCTTC	1 cut(s)	823
EclXI	CGGCCG	1 cut(s)	243
Eco52I	CGGCCG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	705
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	3 cut(s)	332, 400, 906
FatI	CATG	3 cut(s)	328, 396, 902
FauI	CCCGC	2 cut(s)	117, 808
FauNDI	CATATG	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	5 cut(s)	333, 463, 546, 690, 864
FokI	GGATG	2 cut(s)	107, 173
Fsp4HI	GCNGC	5 cut(s)	333, 463, 546, 690, 864
FspBI	CTAG	1 cut(s)	750
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	5 cut(s)	333, 463, 546, 690, 864
HaeIII	GGCC	3 cut(s)	245, 545, 746
HapII	CCGG	4 cut(s)	164, 246, 346, 603
HhaI	GCGC	1 cut(s)	719
Hin1II	CATG	3 cut(s)	332, 400, 906
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	3 cut(s)	89, 103, 845
HpaII	CCGG	4 cut(s)	164, 246, 346, 603
HphI	GGTGA	3 cut(s)	98, 196, 617
Hpy166II	GTNNAC	3 cut(s)	184, 645, 882
Hpy188I	TCNGA	3 cut(s)	199, 481, 507
Hpy188III	TCNNGA	2 cut(s)	219, 577
Hpy8I	GTNNAC	3 cut(s)	184, 645, 882
Hpy99I	CGWCG	2 cut(s)	185, 622
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	4 cut(s)	134, 379, 416, 765
HpyCH4IV	ACGT	3 cut(s)	180, 617, 898
HpyCH4V	TGCA	9 cut(s)	321, 332, 357, 396, 462, 640, 645, 863, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 318, 646, 863
HpySE526I	ACGT	3 cut(s)	180, 617, 898
Hsp92II	CATG	3 cut(s)	332, 400, 906
HspAI	GCGC	1 cut(s)	717
Kzo9I	GATC	2 cut(s)	199, 221
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	3 cut(s)	344, 474, 875
LweI	GCATC	2 cut(s)	330, 627
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	3 cut(s)	180, 617, 898
MaeIII	GTNAC	3 cut(s)	17, 701, 759
MalI	GATC	2 cut(s)	201, 223
MboI	GATC	2 cut(s)	199, 221
MboII	GAAGA	4 cut(s)	207, 799, 840, 847
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	647
MluCI	AATT	3 cut(s)	39, 74, 94
MmeI	TCCRAC	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	377
MspI	CCGG	4 cut(s)	164, 246, 346, 603
MspR9I	CCNGG	4 cut(s)	164, 165, 347, 707
MvaI	CCWGG	1 cut(s)	707
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	4 cut(s)	297, 318, 646, 863
NciI	CCSGG	3 cut(s)	164, 165, 347
NdeI	CATATG	1 cut(s)	850
NdeII	GATC	2 cut(s)	199, 221
NlaIII	CATG	3 cut(s)	332, 400, 906
NlaIV	GGNNCC	3 cut(s)	170, 223, 747
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	400
OliI	CACNNNNGTG	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	3 cut(s)	89, 103, 845
PflFI	GACNNNGTC	1 cut(s)	179
PfoI	TCCNGGA	1 cut(s)	345
PinAI	ACCGGT	1 cut(s)	602
PkrI	GCNGC	5 cut(s)	334, 464, 547, 691, 865
Ppu21I	YACGTR	1 cut(s)	899
Psp6I	CCWGG	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	705
PspN4I	GGNNCC	3 cut(s)	170, 223, 747
PspPI	GGNCC	1 cut(s)	745
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	1 cut(s)	377
SalI	GTCGAC	1 cut(s)	182
SatI	GCNGC	5 cut(s)	333, 463, 546, 690, 864
Sau3AI	GATC	2 cut(s)	199, 221
Sau96I	GGNCC	1 cut(s)	745
ScrFI	CCNGG	4 cut(s)	164, 165, 347, 707
SduI	GDGCHC	1 cut(s)	647
SfaNI	GCATC	2 cut(s)	330, 627
SmaI	CCCGGG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	3 cut(s)	39, 74, 94
SsiI	CCGC	4 cut(s)	110, 546, 689, 801
SspMI	CTAG	1 cut(s)	750
StyD4I	CCNGG	4 cut(s)	162, 163, 345, 705
TaaI	ACNGT	4 cut(s)	134, 379, 416, 765
TaiI	ACGT	3 cut(s)	183, 620, 901
TaqI	TCGA	5 cut(s)	183, 286, 324, 451, 578
TasI	AATT	3 cut(s)	39, 74, 94
TauI	GCSGC	2 cut(s)	548, 692
TfiI	GAWTC	3 cut(s)	89, 103, 845
TscAI	CASTG	4 cut(s)	160, 499, 647, 873
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	3 cut(s)	332, 462, 863
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	3 cut(s)	42, 560, 800
TspGWI	ACGGA	1 cut(s)	5
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	4 cut(s)	160, 499, 647, 873
Tth111I	GACNNNGTC	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	643
XapI	RAATTY	1 cut(s)	74
XceI	RCATGY	1 cut(s)	400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	453
XmaI	CCCGGG	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.