Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0016280

Physical Location & Seq

Genomic Coordinates Reverse (-)

39693082 .. 39693558

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1312400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCATTAGTTAATTTTCATGGTCCCACCCTAATAATTGTATCCCTTTCATTCATCGGCCTATCCAAACTTGTTATCTGTTCCAATTCGATTCACTACATCCACCACTATTGCTCCTTAGAAGTTAACAAAGCCCAAAACGGCTCGTTCCAAGACAACGTTAACAAACTCCTCACCGAACTCTCCTCGAAATCCTCGGGCACCAGCTTCTACAACTCCACCTCCGGAGACAACGACAAAAAAGTGTACGGCCTGTACCTTTGTCGAGGTTCTGTCAAGTCCGGAGTCTGCCACGACTGCATCGACTCCGCTGCCAAGAACCTCAAACAAAATTGCACCAACAACAGGGAATCTATCGTTTGGTATGAGGAAATGCATGTTGGGATATTCGAACCGCTCCATCTCTGCCACGGAGGAGGAGCTTCCGTGGCGATATTGGTGCAGTGTGAACAAAGAGTCAAACGAAGACCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

159

Amino Acids

17.45

Weight (kDa)

8.42

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	38 - 124	4.4e-20	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02832
malus_domestica	MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica	Prupe.4G028400_v2.0.a1
pyrus_communis	pycom10g26370
rosa_chinensis	RchiOBHm_Chr5g0004281
rosa_laevigata	RLG00000031218
rosa_multiflora	Rmu_co8460447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071390
rosa_rugosa	Rorug04G0411100
rosa_samantha	Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana	Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	397
AccIII	TCCGGA	2 cut(s)	224, 281
AciI	CCGC	2 cut(s)	309, 395
AclI	AACGTT	1 cut(s)	159
AfaI	GTAC	2 cut(s)	248, 257
AfiI	CCNNNNNNNGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	2 cut(s)	363, 395
AluBI	AGCT	2 cut(s)	207, 422
AluI	AGCT	2 cut(s)	207, 422
Alw26I	GTCTC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	196
Aor13HI	TCCGGA	2 cut(s)	224, 281
AoxI	GGCC	2 cut(s)	58, 250
ApeKI	GCWGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	166
AsuII	TTCGAA	1 cut(s)	390
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	408
BceAI	ACGGC	2 cut(s)	157, 265
BcgI	CGANNNNNNTGC	4 cut(s)	293, 327, 421, 455
BciVI	GTATCC	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	25, 202
BmsI	GCATC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	195, 409, 426
BsaWI	WCCGGW	2 cut(s)	224, 281
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 206, 236, 411, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	470
BseAI	TCCGGA	2 cut(s)	224, 281
BseDI	CCNNGG	3 cut(s)	195, 409, 426
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	4 cut(s)	161, 175, 429, 432
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	2 cut(s)	60, 252
BshNI	GGYRCC	1 cut(s)	200
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	225, 282
BslFI	GGGAC	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	60, 252
BsoBI	CYCGRG	1 cut(s)	196
Bsp119I	TTCGAA	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp13I	TCCGGA	2 cut(s)	224, 281
BspACI	CCGC	2 cut(s)	309, 395
BspANI	GGCC	2 cut(s)	60, 252
BspEI	TCCGGA	2 cut(s)	224, 281
BspLI	GGNNCC	2 cut(s)	25, 202
BspT104I	TTCGAA	1 cut(s)	390
BspT107I	GGYRCC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	3 cut(s)	195, 409, 426
BstBI	TTCGAA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	2 cut(s)	409, 426
BstF5I	GGATG	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	297, 428
BstNSI	RCATGY	1 cut(s)	380
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	298
BstV2I	GAAGAC	1 cut(s)	472
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	60, 252
BtgI	CCRYGG	2 cut(s)	409, 426
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	247, 256
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CviAII	CATG	2 cut(s)	20, 377
CviJI	RGCY	6 cut(s)	60, 134, 144, 207, 252, 422
CviKI_1	RGCY	6 cut(s)	60, 134, 144, 207, 252, 422
CviQI	GTAC	2 cut(s)	247, 256
DdeI	CTNAG	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	378
FaeI	CATG	2 cut(s)	23, 380
FaiI	YATR	3 cut(s)	21, 366, 378
FaqI	GGGAC	1 cut(s)	9
FatI	CATG	2 cut(s)	19, 376
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	2 cut(s)	60, 252
HapII	CCGG	2 cut(s)	225, 282
Hin1II	CATG	2 cut(s)	23, 380
HincII	GTYRAC	2 cut(s)	127, 163
HindII	GTYRAC	2 cut(s)	127, 163
HinfI	GANTC	5 cut(s)	91, 285, 305, 350, 456
HpaI	GTTAAC	2 cut(s)	127, 163
HpaII	CCGG	2 cut(s)	225, 282
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	4 cut(s)	127, 163, 247, 449
Hpy188III	TCNNGA	2 cut(s)	225, 282
Hpy8I	GTNNAC	4 cut(s)	127, 163, 247, 449
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	4 cut(s)	300, 336, 376, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	297, 428
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	23, 380
Kpn2I	TCCGGA	2 cut(s)	224, 281
KspAI	GTTAAC	2 cut(s)	127, 163
LmnI	GCTCC	3 cut(s)	119, 402, 419
LpnPI	CCDG	5 cut(s)	217, 238, 266, 295, 331
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	309
MaeII	ACGT	1 cut(s)	159
MbiI	CCGCTC	1 cut(s)	397
MboII	GAAGA	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	4 cut(s)	13, 36, 85, 331
MlyI	GAGTC	3 cut(s)	294, 299, 465
MnlI	CCTC	9 cut(s)	182, 196, 205, 232, 260, 332, 361, 407, 410
Mph1103I	ATGCAT	1 cut(s)	378
MroI	TCCGGA	2 cut(s)	224, 281
MseI	TTAA	4 cut(s)	12, 126, 162, 475
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	2 cut(s)	225, 282
MwoI	GCNNNNNNNGC	2 cut(s)	297, 428
NlaIII	CATG	2 cut(s)	23, 380
NlaIV	GGNNCC	2 cut(s)	25, 202
NsiI	ATGCAT	1 cut(s)	378
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	91, 350
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	3 cut(s)	293, 299, 464
PpsI	GAGTC	3 cut(s)	293, 299, 464
Psp1406I	AACGTT	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	25, 202
PspPI	GGNCC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	248, 257
RsaNI	GTAC	2 cut(s)	247, 256
SaqAI	TTAA	4 cut(s)	12, 126, 162, 475
SatI	GCNGC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	3 cut(s)	294, 299, 465
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	7 cut(s)	162, 209, 224, 261, 271, 324, 424
SfaNI	GCATC	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	390
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	4 cut(s)	13, 36, 85, 331
SsiI	CCGC	2 cut(s)	309, 395
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	5 cut(s)	89, 188, 265, 303, 390
TasI	AATT	4 cut(s)	13, 36, 85, 331
TfiI	GAWTC	2 cut(s)	91, 350
Tru1I	TTAA	4 cut(s)	12, 126, 162, 475
Tru9I	TTAA	4 cut(s)	12, 126, 162, 475
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	8, 39, 43
TspGWI	ACGGA	2 cut(s)	415, 426
TspRI	CASTG	1 cut(s)	449
VpaK11BI	GGWCC	1 cut(s)	23
XceI	RCATGY	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.