Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0016280

Physical Location & Seq

Genomic Coordinates Reverse (-)

21496506 .. 21497786

Gene Structure 1281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1101500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCATTAGTTAATTTTCATGATCACACCCTAATAATTGTATCCCTGTCGTTCATCGGCCTATTCAAACTTGTGATCTGTTCCAATTCGATTCACTACATCCACCACTACTGCTCTTTAGAAGTTAACACAGCCCAAAACGCCCCGTTCCAAGACAACGTCAACAAACTCCTCTCCGAACTCTCCTCTAAATCTTCCGGCACCAGCTTCTACAACTCCACATCCGGAGACAACGACAAAAAAGTGTACGGCCTATATCTTTGTCGAGGTGATGTCAAGTCCGGAGTCTGCCGCGACTGCATCAACTCCGCTGCCAAGAACCTCAAACAAAATTGCACCAACAACAGGGAATCCATCGTTTGGTATGAGGAATGCATGTTGAGATATTCGAACCGATCCATCTCTGCCACGGAGGAGGAGCTTCCGTGGCGGTATTGGTGCAGTGTGAACAAAGTTTCAAACAAAGACCAGTTTAATCAGAGCTTGTTGAGTTTGATGAATGGTCTTGTGGACAAAGCTGTTGGGAATACGACTCCAATTTATTTTGCAACCGGGGATGACAAGAAAGGCAACGGAGGGACGTCGATATATTGTTTGATGCAATGTACTCCGGACATAAATGGGACTGACTGCCAAAGGTGTTTGAGGGCGGGTGTCGGTGGGTATCTGGAGACTTGTGAGGGAAGAACATGGGGTATGATTTTTTCGCCAAGCTGTCAGGTGAGATACGGGCCTGACCTCTTCTACGGGGAAGGAAAGCCAACCAAAAGTGGTGGAACAGGGAAGAGAAAATCTTTCGTTGCTGTTAGAGTCACCGTCCAAGCTGTTGTGGCGGTTCTCTGGCTTATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

285

Amino Acids

31.46

Weight (kDa)

8.47

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	38 - 132	1.6e-25	Salt stress response/antifungal
Stress-antifung	PF01657	147 - 243	1.8e-11	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02832
malus_domestica	MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica	Prupe.4G028400_v2.0.a1
pyrus_communis	pycom10g26370
rosa_chinensis	RchiOBHm_Chr5g0004281
rosa_laevigata	RLG00000031218
rosa_multiflora	Rmu_co8460447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071390
rosa_rugosa	Rorug04G0411100
rosa_samantha	Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana	Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	584
AccB1I	GGYRCC	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	360
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	3 cut(s)	224, 281, 610
AciI	CCGC	5 cut(s)	292, 309, 430, 650, 833
AclWI	GGATC	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	581
AfaI	GTAC	2 cut(s)	248, 607
AfiI	CCNNNNNNNGG	2 cut(s)	345, 360
AgsI	TTSAA	2 cut(s)	67, 459
AluBI	AGCT	6 cut(s)	207, 421, 483, 518, 714, 824
AluI	AGCT	6 cut(s)	207, 421, 483, 518, 714, 824
Alw26I	GTCTC	2 cut(s)	222, 665
AlwI	GGATC	1 cut(s)	390
Aor13HI	TCCGGA	3 cut(s)	224, 281, 610
AoxI	GGCC	3 cut(s)	58, 250, 731
ApeKI	GCWGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	3 cut(s)	281, 733, 805
AsuII	TTCGAA	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	2 cut(s)	362, 407
BceAI	ACGGC	1 cut(s)	265
BciVI	GTATCC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	222, 665
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	292, 312
BlsI	GCNGC	2 cut(s)	293, 313
Bme1390I	CCNGG	1 cut(s)	553
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	553
BmsI	GCATC	2 cut(s)	309, 588
BpmI	CTGGAG	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	389
BpuMI	CCSGG	1 cut(s)	553
BsaHI	GRCGYC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	408, 425, 552
BsaWI	WCCGGW	3 cut(s)	224, 281, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	345, 360
Bse1I	ACTGG	1 cut(s)	469
Bse3DI	GCAATG	1 cut(s)	608
BseAI	TCCGGA	3 cut(s)	224, 281, 610
BseDI	CCNNGG	3 cut(s)	408, 425, 552
BseGI	GGATG	3 cut(s)	99, 221, 562
BseLI	CCNNNNNNNGG	2 cut(s)	345, 360
BseMI	GCAATG	1 cut(s)	608
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	4 cut(s)	161, 175, 428, 431
BseXI	GCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	460
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	3 cut(s)	60, 252, 733
BshNI	GGYRCC	1 cut(s)	200
BsiSI	CCGG	5 cut(s)	198, 225, 282, 552, 611
BslFI	GGGAC	2 cut(s)	592, 637
BslI	CCNNNNNNNGG	2 cut(s)	345, 360
BsmAI	GTCTC	2 cut(s)	222, 665
BsmFI	GGGAC	2 cut(s)	592, 637
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	3 cut(s)	60, 252, 733
Bsp119I	TTCGAA	1 cut(s)	389
Bsp13I	TCCGGA	3 cut(s)	224, 281, 610
Bsp143I	GATC	3 cut(s)	22, 75, 395
BspACI	CCGC	5 cut(s)	292, 309, 430, 650, 833
BspANI	GGCC	3 cut(s)	60, 252, 733
BspEI	TCCGGA	3 cut(s)	224, 281, 610
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	200
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	3 cut(s)	408, 425, 552
BssMI	GATC	3 cut(s)	22, 75, 395
BssNI	GRCGYC	1 cut(s)	581
Bst4CI	ACNGT	1 cut(s)	817
Bst6I	CTCTTC	2 cut(s)	746, 779
BstACI	GRCGYC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	389
BstDSI	CCRYGG	2 cut(s)	408, 425
BstF5I	GGATG	3 cut(s)	99, 221, 562
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	25, 78, 398
BstMAI	GTCTC	2 cut(s)	222, 665
BstMBI	GATC	3 cut(s)	22, 75, 395
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 297, 427, 830
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	551
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	60, 252, 733
BtgI	CCRYGG	2 cut(s)	408, 425
BtsCI	GGATG	3 cut(s)	99, 221, 562
BtsI	GCAGTG	1 cut(s)	448
BtsIMutI	CAGTG	1 cut(s)	448
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	2 cut(s)	247, 606
CspCI	CAANNNNNGTGG	2 cut(s)	754, 789
CviAII	CATG	3 cut(s)	20, 376, 690
CviQI	GTAC	2 cut(s)	247, 606
DpnI	GATC	3 cut(s)	24, 77, 397
DpnII	GATC	3 cut(s)	22, 75, 395
Eam1104I	CTCTTC	2 cut(s)	746, 779
EarI	CTCTTC	2 cut(s)	746, 779
EcoT22I	ATGCAT	1 cut(s)	377
FaeI	CATG	3 cut(s)	23, 379, 693
FaiI	YATR	8 cut(s)	21, 256, 366, 377, 589, 617, 691, 698
FaqI	GGGAC	2 cut(s)	592, 637
FatI	CATG	3 cut(s)	19, 375, 689
FauI	CCCGC	1 cut(s)	643
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	292, 312
FokI	GGATG	3 cut(s)	86, 208, 569
Fsp4HI	GCNGC	2 cut(s)	292, 312
GluI	GCNGC	2 cut(s)	292, 312
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	3 cut(s)	60, 252, 733
HapII	CCGG	5 cut(s)	198, 225, 282, 552, 611
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	3 cut(s)	23, 379, 693
HincII	GTYRAC	2 cut(s)	127, 163
HindII	GTYRAC	2 cut(s)	127, 163
HinfI	GANTC	5 cut(s)	91, 285, 350, 532, 810
HpaI	GTTAAC	1 cut(s)	127
HpaII	CCGG	5 cut(s)	198, 225, 282, 552, 611
HphI	GGTGA	3 cut(s)	281, 733, 805
Hpy166II	GTNNAC	5 cut(s)	127, 163, 247, 448, 511
Hpy188I	TCNGA	2 cut(s)	178, 480
Hpy188III	TCNNGA	5 cut(s)	20, 225, 282, 611, 668
Hpy8I	GTNNAC	5 cut(s)	127, 163, 247, 448, 511
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	1 cut(s)	746
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4IV	ACGT	2 cut(s)	159, 581
HpyCH4V	TGCA	6 cut(s)	300, 336, 375, 441, 548, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 297, 427, 830
HpySE526I	ACGT	2 cut(s)	159, 581
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	3 cut(s)	23, 379, 693
Kpn2I	TCCGGA	3 cut(s)	224, 281, 610
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	22, 75, 395
LmnI	GCTCC	1 cut(s)	418
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	309, 588
MaeII	ACGT	2 cut(s)	159, 581
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	3 cut(s)	24, 77, 397
MboI	GATC	3 cut(s)	22, 75, 395
MboII	GAAGA	4 cut(s)	186, 696, 733, 796
MluCI	AATT	5 cut(s)	13, 36, 85, 331, 537
MlyI	GAGTC	3 cut(s)	294, 526, 819
Mph1103I	ATGCAT	1 cut(s)	377
MroI	TCCGGA	3 cut(s)	224, 281, 610
MseI	TTAA	4 cut(s)	12, 126, 474, 853
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	5 cut(s)	198, 225, 282, 552, 611
MspR9I	CCNGG	1 cut(s)	553
Mva1269I	GAATGC	1 cut(s)	377
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	4 cut(s)	140, 297, 427, 830
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	3 cut(s)	22, 75, 395
NlaIII	CATG	3 cut(s)	23, 379, 693
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	811
NsiI	ATGCAT	1 cut(s)	377
NspI	RCATGY	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	389
PagI	TCATGA	1 cut(s)	19
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	91, 350
PflFI	GACNNNGTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	360
PkrI	GCNGC	2 cut(s)	293, 313
PleI	GAGTC	3 cut(s)	293, 526, 818
PpsI	GAGTC	3 cut(s)	293, 526, 818
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	731
PsyI	GACNNNGTC	1 cut(s)	158
RsaI	GTAC	2 cut(s)	248, 607
RsaNI	GTAC	2 cut(s)	247, 606
SaqAI	TTAA	4 cut(s)	12, 126, 474, 853
SatI	GCNGC	2 cut(s)	292, 312
Sau3AI	GATC	3 cut(s)	22, 75, 395
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	3 cut(s)	294, 526, 819
ScrFI	CCNGG	1 cut(s)	553
SfaNI	GCATC	2 cut(s)	309, 588
SfuI	TTCGAA	1 cut(s)	389
Sse9I	AATT	5 cut(s)	13, 36, 85, 331, 537
SsiI	CCGC	5 cut(s)	292, 309, 430, 650, 833
StyD4I	CCNGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	817
TaiI	ACGT	2 cut(s)	162, 584
TaqI	TCGA	4 cut(s)	89, 265, 389, 584
TasI	AATT	5 cut(s)	13, 36, 85, 331, 537
TatI	WGTACW	1 cut(s)	605
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	91, 350
Tru1I	TTAA	4 cut(s)	12, 126, 474, 853
Tru9I	TTAA	4 cut(s)	12, 126, 474, 853
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	811
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	811
TspDTI	ATGAA	3 cut(s)	8, 43, 512
TspGWI	ACGGA	3 cut(s)	414, 425, 588
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	379
ZraI	GACGTC	1 cut(s)	582
Zsp2I	ATGCAT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.