Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0016280

Physical Location & Seq

Genomic Coordinates Forward (+)

1333158 .. 1334712

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G028400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTCAGTTTTACATGATCACGCCCTAACAATCGTCTCCCTTTCATTTATCGGCCTACTCAAACTGGTTTTTTGTTCCAATTCCATTCGCTACATCCACCACTACTGCTCCTTAGAAGTTAACAAAACCCAAAACGCCCCTTTCCAAGACAACGTCGACCGCCTCCTCTCCGACCTCTCCTCCAAATCCTATGGCAACAGATTCTACAACTCCACATCCGGAGACAACGACAAAAAAGTTTACGGCTTATTTCTTTGTCGAGGTGACGTCTCCCCCGGAGTCTGCCGTGACTGCATCGACTCCTGCACCAAAAACCTCAAACAAAACTGCACCCACAACAAAGAGTCAATCGTTTGGTACGAGGAATGCATGCTGAGATATTCAAACCATTCCATCTTCGCCACAGAGGAGGAGATGCCGTGGCGGTATTGGTGCAGCGTGAACAAAGTTTCCAACTCAGACCAGTTTAATCAGAGTTTGTCCACCTTGATGAATGGGCTTGTGGACAAGGCCGCGTTTGGCAAAACCACTCCACCATTTTTTGCGACGGGGTACGACAAGAAAGGCGGTGACGGCGGCATTTCGATATATTGTTTGATGCAATGCACGCCGGACATAAATGGGAGTGAGTGTCAAAGGTGTTTGAAGGCGGCTGTCGGCGGTTATCAGGAGACTTGTGAGGGGAGGACATGGTCTATGATATTTTCGCCTAGCTGTCAGGTGAGGTATGGGTCTGATCCATTCTATGGGGAAGGAAAGCCAATCAAAAGTGGCGGTGGAAGAGGGAAGAAGAATTCATATGTGGCTGTTGCAGCGGTATTGTGCATGGTTCTGTCTGGCTTATTGGTTAATCTACGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022607 GO:0031224 GO:0031225 GO:0031226 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Stress-antifung

Protein Analysis

288

Amino Acids

31.86

Weight (kDa)

8.27

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016280)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02832
malus_domestica	MD00G1101500.v1.1 MD10G1312400.v1.1
prunus_persica	Prupe.4G028400_v2.0.a1
pyrus_communis	pycom10g26370
rosa_chinensis	RchiOBHm_Chr5g0004281
rosa_laevigata	RLG00000031218
rosa_multiflora	Rmu_co8460447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00071390
rosa_rugosa	Rorug04G0411100
rosa_samantha	Rh5BG037900 Rh5CG041600 Rh5DG037200
rosa_wichuraiana	Rw5G003510 Rw5G003710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	218
AciI	CCGC	9 cut(s)	160, 424, 513, 567, 576, 650, 660, 774, 815
AclWI	GGATC	1 cut(s)	731
AcsI	RAATTY	1 cut(s)	793
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	359, 554
AfiI	CCNNNNNNNGG	1 cut(s)	746
AgsI	TTSAA	2 cut(s)	384, 646
AloI	GAACNNNNNNTCC	2 cut(s)	434, 466
AluBI	AGCT	1 cut(s)	714
AluI	AGCT	1 cut(s)	714
Alw26I	GTCTC	4 cut(s)	40, 216, 274, 665
AlwI	GGATC	1 cut(s)	731
Aor13HI	TCCGGA	1 cut(s)	218
AoxI	GGCC	2 cut(s)	52, 510
ApeKI	GCWGC	2 cut(s)	435, 812
ApoI	RAATTY	1 cut(s)	793
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	275, 581, 733
BbvI	GCAGC	2 cut(s)	447, 824
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	4 cut(s)	259, 270, 403, 589
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	4 cut(s)	40, 216, 274, 665
BfaI	CTAG	1 cut(s)	711
BisI	GCNGC	5 cut(s)	436, 513, 577, 651, 813
BlsI	GCNGC	5 cut(s)	437, 514, 578, 652, 814
Bme1390I	CCNGG	1 cut(s)	276
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	303, 405, 588
BpuMI	CCSGG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	857
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	274, 419
BsaWI	WCCGGW	1 cut(s)	218
BsaXI	ACNNNNNCTCC	8 cut(s)	92, 122, 164, 194, 404, 434, 616, 646
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	2 cut(s)	69, 463
Bse3DI	GCAATG	1 cut(s)	608
BseAI	TCCGGA	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	274, 419
BseGI	GGATG	2 cut(s)	93, 215
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	2 cut(s)	365, 471
BseNI	ACTGG	2 cut(s)	69, 463
BseRI	GAGGAG	4 cut(s)	155, 169, 422, 425
BseXI	GCAGC	2 cut(s)	447, 824
BsgI	GTGCAG	3 cut(s)	289, 313, 454
Bsh1236I	CGCG	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	54, 512
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	219, 276, 611
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	4 cut(s)	40, 216, 274, 665
BsmBI	CGTCTC	2 cut(s)	40, 274
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	54, 512
Bsp13I	TCCGGA	1 cut(s)	218
Bsp143I	GATC	2 cut(s)	16, 736
BspACI	CCGC	9 cut(s)	160, 424, 513, 567, 576, 650, 660, 774, 815
BspANI	GGCC	2 cut(s)	54, 512
BspCNI	CTCAG	2 cut(s)	366, 470
BspEI	TCCGGA	1 cut(s)	218
BspFNI	CGCG	1 cut(s)	515
BspPI	GGATC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	2 cut(s)	69, 463
BssECI	CCNNGG	2 cut(s)	274, 419
BssMI	GATC	2 cut(s)	16, 736
BssNI	GRCGYC	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	775
BstACI	GRCGYC	1 cut(s)	267
BstBAI	YACGTR	1 cut(s)	857
BstC8I	GCNNGC	2 cut(s)	371, 608
BstDEI	CTNAG	3 cut(s)	112, 374, 457
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	93, 215
BstFNI	CGCG	1 cut(s)	515
BstKTI	GATC	2 cut(s)	19, 739
BstMAI	GTCTC	4 cut(s)	40, 216, 274, 665
BstMBI	GATC	2 cut(s)	16, 736
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	291, 573, 607, 812
BstNSI	RCATGY	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	2 cut(s)	447, 824
BsuRI	GGCC	2 cut(s)	54, 512
BtgI	CCRYGG	1 cut(s)	419
BtsCI	GGATG	2 cut(s)	93, 215
Cac8I	GCNNGC	2 cut(s)	371, 608
Csp6I	GTAC	2 cut(s)	358, 553
CviAII	CATG	5 cut(s)	14, 370, 690, 826, 861
CviJI	RGCY	9 cut(s)	54, 246, 499, 512, 653, 714, 760, 806, 840
CviKI_1	RGCY	9 cut(s)	54, 246, 499, 512, 653, 714, 760, 806, 840
CviQI	GTAC	2 cut(s)	358, 553
DdeI	CTNAG	3 cut(s)	112, 374, 457
DpnI	GATC	2 cut(s)	18, 738
DpnII	GATC	2 cut(s)	16, 736
Eam1104I	CTCTTC	1 cut(s)	775
EarI	CTCTTC	1 cut(s)	775
EcoRI	GAATTC	1 cut(s)	793
EcoT22I	ATGCAT	1 cut(s)	371
Esp3I	CGTCTC	2 cut(s)	40, 274
FaeI	CATG	5 cut(s)	17, 373, 693, 829, 864
FatI	CATG	5 cut(s)	13, 369, 689, 825, 860
FauNDI	CATATG	1 cut(s)	799
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	436, 513, 577, 651, 813
FokI	GGATG	2 cut(s)	80, 202
Fsp4HI	GCNGC	5 cut(s)	436, 513, 577, 651, 813
FspBI	CTAG	1 cut(s)	711
GluI	GCNGC	5 cut(s)	436, 513, 577, 651, 813
HaeIII	GGCC	2 cut(s)	54, 512
HapII	CCGG	3 cut(s)	219, 276, 611
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	17, 373, 693, 829, 864
HincII	GTYRAC	2 cut(s)	121, 157
HindII	GTYRAC	2 cut(s)	121, 157
HinfI	GANTC	4 cut(s)	201, 279, 299, 344
HpaI	GTTAAC	1 cut(s)	121
HpaII	CCGG	3 cut(s)	219, 276, 611
HphI	GGTGA	3 cut(s)	275, 581, 733
Hpy166II	GTNNAC	6 cut(s)	121, 157, 241, 442, 483, 505
Hpy188I	TCNGA	4 cut(s)	172, 460, 474, 736
Hpy188III	TCNNGA	2 cut(s)	219, 668
Hpy8I	GTNNAC	6 cut(s)	121, 157, 241, 442, 483, 505
Hpy99I	CGWCG	2 cut(s)	158, 550
HpyAV	CCTTC	2 cut(s)	640, 746
HpyCH4IV	ACGT	3 cut(s)	153, 267, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	291, 573, 607, 812
HpyF3I	CTNAG	3 cut(s)	112, 374, 457
HpySE526I	ACGT	3 cut(s)	153, 267, 856
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	17, 373, 693, 829, 864
Kpn2I	TCCGGA	1 cut(s)	218
Ksp22I	TGATCA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	16, 736
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	9 cut(s)	50, 232, 289, 316, 476, 624, 653, 704, 822
Lsp1109I	GCAGC	2 cut(s)	447, 824
LweI	GCATC	3 cut(s)	303, 405, 588
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	3 cut(s)	153, 267, 856
MaeIII	GTNAC	3 cut(s)	263, 287, 569
MalI	GATC	2 cut(s)	18, 738
MboI	GATC	2 cut(s)	16, 736
MboII	GAAGA	4 cut(s)	388, 792, 799, 802
MluCI	AATT	2 cut(s)	79, 793
MlyI	GAGTC	3 cut(s)	288, 293, 353
MmeI	TCCRAC	2 cut(s)	195, 477
Mph1103I	ATGCAT	1 cut(s)	371
MroI	TCCGGA	1 cut(s)	218
MseI	TTAA	3 cut(s)	120, 468, 849
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	3 cut(s)	219, 276, 611
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	371
MvnI	CGCG	1 cut(s)	515
MwoI	GCNNNNNNNGC	4 cut(s)	291, 573, 607, 812
NciI	CCSGG	1 cut(s)	276
NdeI	CATATG	1 cut(s)	799
NdeII	GATC	2 cut(s)	16, 736
NlaIII	CATG	5 cut(s)	17, 373, 693, 829, 864
NmuCI	GTSAC	3 cut(s)	263, 287, 569
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	1 cut(s)	373
PaeI	GCATGC	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	201
PflFI	GACNNNGTC	2 cut(s)	152, 691
PflMI	CCANNNNNTGG	1 cut(s)	746
PkrI	GCNGC	5 cut(s)	437, 514, 578, 652, 814
PleI	GAGTC	3 cut(s)	287, 293, 352
PpsI	GAGTC	3 cut(s)	287, 293, 352
Ppu21I	YACGTR	1 cut(s)	857
PsyI	GACNNNGTC	2 cut(s)	152, 691
RsaI	GTAC	2 cut(s)	359, 554
RsaNI	GTAC	2 cut(s)	358, 553
RseI	CAYNNNNRTG	1 cut(s)	488
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	3 cut(s)	120, 468, 849
SatI	GCNGC	5 cut(s)	436, 513, 577, 651, 813
Sau3AI	GATC	2 cut(s)	16, 736
SchI	GAGTC	3 cut(s)	288, 293, 353
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	3 cut(s)	303, 405, 588
SmiMI	CAYNNNNRTG	1 cut(s)	488
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	2 cut(s)	79, 793
SsiI	CCGC	9 cut(s)	160, 424, 513, 567, 576, 650, 660, 774, 815
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	274
TaiI	ACGT	3 cut(s)	156, 270, 859
TaqI	TCGA	4 cut(s)	156, 259, 297, 584
TasI	AATT	2 cut(s)	79, 793
TauI	GCSGC	3 cut(s)	515, 579, 653
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	3 cut(s)	120, 468, 849
Tru9I	TTAA	3 cut(s)	120, 468, 849
TseFI	GTSAC	3 cut(s)	263, 287, 569
TseI	GCWGC	2 cut(s)	435, 812
Tsp45I	GTSAC	3 cut(s)	263, 287, 569
TspDTI	ATGAA	3 cut(s)	33, 506, 786
Tth111I	GACNNNGTC	2 cut(s)	152, 691
Van91I	CCANNNNNTGG	1 cut(s)	746
XapI	RAATTY	1 cut(s)	793
XceI	RCATGY	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	711
ZraI	GACGTC	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.