FvH4_3g03620

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003045
Physical Location & Seq
Forward (+)
2032026 .. 2041011
8986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03620.t4

Sequence Viewer

Length: 3711 bp
ATGAATCTGCAATGCAGGGTGTCTGGGTTTAATGGCAGATTATCTGCTAGTTTCAAGTTAAACAAGGCAATGGAGCCCTTGGATGGGCCTAATTGTGTCACATATTCAAGAAGAAAGTTTCTTCTACTTCTTGGGATTTTAGGTTGTATTACAATTGTTTGGTTCTTATTGGGTTCCAATGAGGGAATTATGGGTATTAAAGAGAAGACTCCAGAGATGTGTGGAAAGAAAGCTCCAATCTTGCAGCAGCATTTCAATGTCGGCAAGAACCAGCTTCTGGCTTTAGCTTCCTTGTTCTCCGAATCAGATCAGATAGCATCCCTTGAATGTACCAAAGAAACAGGACCTGCGATGCTTTTAACTGATGGCATTTCCTGTGCTCTGAAGGCATTGTGTTCAGATGAGAGAGAATTTCAAGAGCATCATAAATGGGTTGCAGAATATGTAGAAGCTGAGGACCAATGCCTGGCGCAAGATGAAAACATCCCCAGAATGCTTGACCTATCATTGCTACAAGAAAATTCATTGGCACAAATTCCGCAGTCTACAGTATCCACTCATAGGATTTGTCAAAAGGACGCATTGGGATCAGGCGCAAAGGTAGAGTGCGCAAAAGTGGATTCTCATATTGATTGTGGTTTGATGATGGGATGTTCATTGGTTTTTGTTGGGATGAATTTGTGCTACCAATTATGGAGGAACCAGAAGCAGAAGCTGGTTCGTGGGTGTTCCTGCCAGCAGAAAATGGTTCAAGAACAGTCATTCGGTAGTAGGAAGCTGCCAGAGAAACAGCAACAAACCCAAAGTCCTCGAAAGGTCGCATGCACTTGGAGGAAGAAGCTCCTAATCGTATTTGTCGTACTTGGAGCTCTTGTGTCAATTTGGTTATTTTTCTACTTGAATGAAATAGATTTTTTGTGGAGAGAAGAAACACTTGCCAACATGTGTGATGAACGAGCCCGAATGTTGCAAGATCAGTTCAATGTGAGCCTGAATCATGTTCATGCTTTAGCCATTCTTGTCTCCACGTTTCACCATGGGAAGCATCCTTCTGCCATTGATCAGAAAACGTTCGGTGAATACACAGAAAGAACAGCTTTTGAGAGACCACTCACTAGTGGTGTTGCTTATGCTTTAAAAGTTACTCATGCTGAGAGGGAACAATTTGAGAGGGAACATGGATGGACAATAAAGAAAATGGAAACTGAGGACCAGACTCTTGTCCAAGATTTTCTTCCGGAAAGCTTGGATCCTGCTCCTATTCAAGATGAATATGCACCAGTGATATTTTCTCAAGAAACGGTCTCCCATATTGTCTCCATTGACATGATGTCGGGAAAGGATGACCGTGAGAACATCTTGCGAGCAAGGTCAACAGGAAAGGGAGTACTGACTTCCCCTTTTAAGCTATTGAAATCCAATCACCTGGGTGTTGTTCTCACATTTGCTGTGTATAATATCGACTTGCCTCCAGATGCCACATCAGAAGAACGAATTCAAGCAACTGTGGGGTATTTAGGTGCATCTTACGATGTTCCATCTCTTGTGGAGAAGCTCCTGCACCAACTTGCAACAAAGCAAACAATTGTTGTGAATGTTTATGATGCAACTAACGCGTCTTCTCTGATCAACATGTATGGAACTGATGTTGTTGATACTGGGCTGTTGCATATTAGCAGCCTTGATTTCGGTGATCCACAACGCAAACATGAAATGCACTGCAGGTTTAAGCATAAACCTCCTTTTCCGTGGACGGCAGTAAGTGCATCAGTAGCATTTCTTGTCATTACATTTCTACTTGGTCATATATTTTATGCGGCCATAAGCCAAATAGCAAAGGTAGAGGCAGACTTTTGTGAGATGATGGAACTCAAAGTTCGCGCAGAAGCTGCAGATGTGGCCAAATCTCAGTTCCTTGCAACTGTTTCCCATGAAATCCGGACACCAATGAATGGTGTTTTAGGTATGCTGCAAATGCTGATGGACACAAATCTTGATGCAAATCAACAAGATTATGCTGAGACTGCTCTTGCTAGTGGAAGAGATCTTATCTCGCTTATAAATGAGGTTCTTGATCAGGCCAAGATAGAATCAGGACGGCTGGAACTTGAAACTGTACCTTTTGATCTACGATCGGTGCTTGATAATGTGCTATCACTTTTCTCAGGAAAAACGAATGAAAAAGGGGTTGAGTTGGCTGTTTATGTCTCCAATATGGTTCCAGAAGTTGTCATTGGAGATCCAGGACGCCTTAGGCAGATAATTACTAACTTGGTTGGGAATTCTATTAAGTTCACCCATGATAAAGGACATATATTTGTCTCGGTGCATCTGGCAAATGAAGTGAGGGGTCCACCTGATTTTATGGATGAAGTTCTAAGACAAGGCTTGAATTTAGTTGGAGACCTCTCAAACAAAACTTATAATACATTGAGTGGCTTTCCTGTGGTTGATAGAAGGAAAAGCTGGGAATGTTTCAAAACTTTAAGCAGCACAACAGTGGAGGAACCTGATATGATAAAATTACTCGTAACAGTTGAGGATACTGGTGTAGGTATTCCATTAGAAGCACAAAGTCGCATCTTCACACCTTTTATGCAGGCTGATAGTTCCACTTCTAGAACTTATGGTGGAACTGGAATTGGATTGAGCATTAGCAAACGTCTGGTAGATCTCATGTGTGGGGAGATAGGGTTTGTGAGTGTTCCTGGCGTTGGCAGTACCTTTTCATTTACTGGGTCATTTGAGAGAGGAAAAACAAGTTCTCTAGATACGAAGTGGGCCCAGTATAAACCAGCTGTGTCAGAATTTCGAGGAATGAGAGCACTGGTAATAGATAAGAGAATCACCCGAACTGAAGTCACGAGATATCATATGCAGAGATTGAGGATAACTGCAGATATTGCATCCAGTCTAGAATCAGCATGTTCTTATCTGTCTAGTACGAGCAAGACAAGCCTGTCCACATGTTTGGCCATGGTTCTTATTGACAAAGATGTTTGGGATAAAGAAACTGGTCTTACATTCCATCAGTCAGTTAAAGAGCATAGGCAAAATTGCAGCGTGGGGTCTCCCCTGAACTTTCCGAAGATATTTCTCTTGGCTACCTCCATTAGTGCTACTGAACGTAATGAACTAAAATCTTCTGGTTTTGTAGATAATGTATTGATGAAGCCTCTTCGGTTAAGTGTCTTAATTGCCTGCTTCCAAGAGGCCCTTGTAAGCGATAAAAAGAGGCTTGTGAACATAGAAAAACCAACTCTTGGAAAGTTACTACGAGGCAGGAAGATTTTGGTAGTGGATGACAATGCAGTCAACAGAAGAGTGGCAGAAGGTGCTTTAAAGAAATATGGAGCAATTGTCACCTGTGTCGATAGTGGAAAGACTGCTTTAGACATGCTTAAGCCACCTCACAACTTTGACGCTTGCTTTATGGATCTCCAAATGCCAGAAATGGACGGGTTCGAAACAACTCGTCGAATCCGATGTATGGAGGATGAAGTAAAGGAGAAAATTGCATCTGGGGAAGCACCAATCAAGATGTTTGGCAATGTGGAAGATTGGCACACACCAATATTAGCCATGACGGCTGATGTGGTTCAGGCTTCAATTGAAGAGTGCAAGAAGCGTGGGATGGATGAATACGTGTCAAAGCCATTTGAAGAAGAACAATTATATGCAGCAGTAACAAAATTCTTTGAGTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010271 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048509 GO:0048519 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071368 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

1237

Amino Acids

137.82

Weight (kDa)

6.0

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 352 - 506 3.2e-27 CHASE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2060, 2424
AasI GACNNNNNNGTC 2 cut(s) 2959, 3311
Acc16I TGCGCA 1 cut(s) 610
Acc36I ACCTGC 2 cut(s) 355, 1713
AccB7I CCANNNNNTGG 4 cut(s) 277, 466, 1952, 3263
AccI GTMKAC 1 cut(s) 545
AccII CGCG 2 cut(s) 1616, 1881
AccIII TCCGGA 2 cut(s) 1237, 1938
AciI CCGC 2 cut(s) 539, 1817
AclI AACGTT 1 cut(s) 1070
AclWI GGATC 6 cut(s) 595, 1244, 1257, 1688, 2234, 3444
AcoI YGGCCR 3 cut(s) 1818, 1899, 2973
AcsI RAATTY 9 cut(s) 410, 520, 534, 676, 1494, 2281, 2392, 2807, 3692
AcuI CTGAAG 2 cut(s) 404, 2877
AcyI GRCGYC 1 cut(s) 2248
AfaI GTAC 6 cut(s) 331, 861, 1389, 2118, 2722, 2944
AfiI CCNNNNNNNGG 9 cut(s) 83, 84, 277, 466, 561, 1952, 2714, 3263, 3490
AflII CTTAAG 1 cut(s) 3401
AflIII ACRYGT 5 cut(s) 942, 1614, 1632, 2966, 3645
AhdI GACNNNNNGTC 1 cut(s) 1330
AhlI ACTAGT 1 cut(s) 1115
AjnI CCWGG 4 cut(s) 465, 1425, 2242, 2707
AjuI GAANNNNNNNTTGG 6 cut(s) 1218, 1250, 1895, 1927, 2217, 2249
AleI CACNNNNGTG 2 cut(s) 1428, 2498
Alw21I GWGCWC 3 cut(s) 382, 871, 2827
Alw26I GTCTC 9 cut(s) 1027, 1099, 1309, 1321, 2015, 2212, 2326, 2397, 3075
AlwI GGATC 6 cut(s) 595, 1244, 1257, 1688, 2234, 3444
AlwNI CAGNNNCTG 4 cut(s) 277, 347, 715, 1889
Aor13HI TCCGGA 2 cut(s) 1237, 1938
AoxI GGCC 7 cut(s) 86, 1818, 1899, 2079, 2781, 2973, 3213
ApaI GGGCCC 1 cut(s) 2785
ApeKI GCWGC 9 cut(s) 244, 247, 778, 1677, 1889, 1969, 2490, 3060, 3680
ApoI RAATTY 9 cut(s) 410, 520, 534, 676, 1494, 2281, 2392, 2807, 3692
ArsI GACNNNNNNTTYG 2 cut(s) 790, 822
Asp700I GAANNNNTTC 2 cut(s) 1070, 1494
AspLEI GCGC 4 cut(s) 472, 596, 611, 1883
AspS9I GGNCC 8 cut(s) 86, 344, 457, 1210, 2351, 2781, 2782, 3214
AsuHPI GGTGA 7 cut(s) 1025, 1088, 1415, 1703, 2287, 2839, 3355
AsuII TTCGAA 1 cut(s) 3465
AvaII GGWCC 4 cut(s) 344, 457, 1210, 2351
AxyI CCTNAGG 1 cut(s) 2252
BaeGI GKGCMC 1 cut(s) 2785
BaeI ACNNNNGTAYC 2 cut(s) 2535, 2568
BalI TGGCCA 2 cut(s) 1901, 2975
BamHI GGATCC 1 cut(s) 1249
BanII GRGCYC 4 cut(s) 78, 871, 961, 2785
BauI CACGAG 1 cut(s) 2863
BbsI GAAGAC 2 cut(s) 212, 1611
Bbv12I GWGCWC 3 cut(s) 382, 871, 2827
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 9 cut(s) 256, 259, 765, 1689, 1876, 1956, 2502, 3072, 3692
BccI CCATC 9 cut(s) 77, 359, 640, 1176, 1546, 1858, 1975, 3036, 3628
BceAI ACGGC 3 cut(s) 1770, 2114, 3603
BciT130I CCWGG 4 cut(s) 467, 1427, 2244, 2709
BciVI GTATCC 2 cut(s) 562, 2536
BclI TGATCA 3 cut(s) 1060, 1626, 2074
BcoDI GTCTC 9 cut(s) 1027, 1099, 1309, 1321, 2015, 2212, 2326, 2397, 3075
BcuI ACTAGT 1 cut(s) 1115
BfaI CTAG 7 cut(s) 48, 1116, 2034, 2619, 2768, 2915, 2940
BfmI CTRYAG 4 cut(s) 546, 1720, 1890, 2895
BfrI CTTAAG 1 cut(s) 3401
BfuAI ACCTGC 2 cut(s) 355, 1713
BfuI GTATCC 2 cut(s) 562, 2536
BglI GCCNNNNNGGC 1 cut(s) 3587
BglII AGATCT 2 cut(s) 2044, 2671
BmcAI AGTACT 1 cut(s) 1389
Bme1390I CCNGG 4 cut(s) 467, 1427, 2244, 2709
Bme18I GGWCC 4 cut(s) 344, 457, 1210, 2351
BmeRI GACNNNNNGTC 1 cut(s) 1330
BmgT120I GGNCC 8 cut(s) 86, 344, 457, 1210, 2351, 2781, 2782, 3214
BmiI GGNNCC 8 cut(s) 75, 175, 701, 1251, 2220, 2352, 2508, 2783
BmrFI CCNGG 4 cut(s) 467, 1427, 2244, 2709
BmrI ACTGGG 3 cut(s) 1668, 2745, 2779
BmuI ACTGGG 3 cut(s) 1668, 2745, 2779
BoxI GACNNNNGTC 1 cut(s) 1220
BpiI GAAGAC 2 cut(s) 212, 1611
BpmI CTGGAG 2 cut(s) 195, 1455
Bpu10I CCTNAGC 1 cut(s) 453
Bpu14I TTCGAA 1 cut(s) 3465
BpuEI CTTGAG 1 cut(s) 1278
BsaAI YACGTR 1 cut(s) 3646
BsaBI GATNNNNATC 1 cut(s) 2001
BsaHI GRCGYC 1 cut(s) 2248
BsaI GGTCTC 4 cut(s) 1099, 1309, 2397, 3075
BsaJI CCNNGG 5 cut(s) 78, 1036, 1426, 1748, 2976
BsaWI WCCGGW 2 cut(s) 1237, 1938
BsaXI ACNNNNNCTCC 6 cut(s) 858, 888, 2678, 2708, 3345, 3375
Bsc4I CCNNNNNNNGG 9 cut(s) 83, 84, 277, 466, 561, 1952, 2714, 3263, 3490
Bse1I ACTGG 9 cut(s) 1280, 1663, 2551, 2641, 2740, 2785, 2832, 2910, 3019
Bse21I CCTNAGG 1 cut(s) 2252
Bse3DI GCAATG 4 cut(s) 17, 75, 506, 3556
Bse8I GATNNNNATC 1 cut(s) 2001
BseAI TCCGGA 2 cut(s) 1237, 1938
BseBI CCWGG 4 cut(s) 467, 1427, 2244, 2709
BseDI CCNNGG 5 cut(s) 78, 1036, 1426, 1748, 2976
BseJI GATNNNNATC 1 cut(s) 2001
BseLI CCNNNNNNNGG 9 cut(s) 83, 84, 277, 466, 561, 1952, 2714, 3263, 3490
BseMI GCAATG 4 cut(s) 17, 75, 506, 3556
BseMII CTCAG 6 cut(s) 444, 1143, 1197, 1922, 2010, 2178
BseNI ACTGG 9 cut(s) 1280, 1663, 2551, 2641, 2740, 2785, 2832, 2910, 3019
BseSI GKGCMC 1 cut(s) 2785
BseXI GCAGC 9 cut(s) 256, 259, 765, 1689, 1876, 1956, 2502, 3072, 3692
BseYI CCCAGC 1 cut(s) 2466
BsgI GTGCAG 1 cut(s) 1544
Bsh1236I CGCG 2 cut(s) 1616, 1881
Bsh1285I CGRYCG 1 cut(s) 2135
BshFI GGCC 7 cut(s) 88, 1820, 1901, 2081, 2783, 2975, 3215
BsiEI CGRYCG 1 cut(s) 2135
BsiHKAI GWGCWC 3 cut(s) 382, 871, 2827
BsiSI CCGG 2 cut(s) 1238, 1939
BslI CCNNNNNNNGG 9 cut(s) 83, 84, 277, 466, 561, 1952, 2714, 3263, 3490
BsmAI GTCTC 9 cut(s) 1027, 1099, 1309, 1321, 2015, 2212, 2326, 2397, 3075
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 7 cut(s) 88, 1820, 1901, 2081, 2783, 2975, 3215
Bso31I GGTCTC 4 cut(s) 1099, 1309, 2397, 3075
Bsp119I TTCGAA 1 cut(s) 3465
Bsp120I GGGCCC 1 cut(s) 2781
Bsp1286I GDGCHC 6 cut(s) 78, 382, 871, 961, 2785, 2827
Bsp13I TCCGGA 2 cut(s) 1237, 1938
Bsp19I CCATGG 2 cut(s) 1036, 2976
BspACI CCGC 2 cut(s) 539, 1817
BspANI GGCC 7 cut(s) 88, 1820, 1901, 2081, 2783, 2975, 3215
BspCNI CTCAG 6 cut(s) 445, 1144, 1198, 1921, 2011, 2177
BspEI TCCGGA 2 cut(s) 1237, 1938
BspFNI CGCG 2 cut(s) 1616, 1881
BspLI GGNNCC 8 cut(s) 75, 175, 701, 1251, 2220, 2352, 2508, 2783
BspMAI CTGCAG 3 cut(s) 1724, 1894, 2899
BspMI ACCTGC 2 cut(s) 355, 1713
BspPI GGATC 6 cut(s) 595, 1244, 1257, 1688, 2234, 3444
BspT104I TTCGAA 1 cut(s) 3465
BspTI CTTAAG 1 cut(s) 3401
BspTNI GGTCTC 4 cut(s) 1099, 1309, 2397, 3075
BsrDI GCAATG 4 cut(s) 17, 75, 506, 3556
BsrI ACTGG 9 cut(s) 1280, 1663, 2551, 2641, 2740, 2785, 2832, 2910, 3019
BssECI CCNNGG 5 cut(s) 78, 1036, 1426, 1748, 2976
BssNI GRCGYC 1 cut(s) 2248
BssSI CACGAG 1 cut(s) 2863
BssT1I CCWWGG 3 cut(s) 78, 1036, 2976
Bst2BI CACGAG 1 cut(s) 2863
Bst2UI CCWGG 4 cut(s) 467, 1427, 2244, 2709
Bst4CI ACNGT 9 cut(s) 550, 759, 1303, 1349, 1507, 1924, 2116, 2500, 2536
Bst6I CTCTTC 4 cut(s) 2035, 3183, 3316, 3609
BstACI GRCGYC 1 cut(s) 2248
BstAFI CTTAAG 1 cut(s) 3401
BstAPI GCANNNNNTGC 4 cut(s) 1763, 1889, 2903, 3335
BstBAI YACGTR 1 cut(s) 3646
BstBI TTCGAA 1 cut(s) 3465
BstC8I GCNNGC 6 cut(s) 737, 823, 1365, 2601, 3202, 3427
BstDEI CTNAG 8 cut(s) 453, 1152, 1206, 1908, 2019, 2164, 2252, 2378
BstDSI CCRYGG 3 cut(s) 1036, 1748, 2976
BstFNI CGCG 2 cut(s) 1616, 1881
BstHHI GCGC 4 cut(s) 472, 596, 611, 1883
BstMAI GTCTC 9 cut(s) 1027, 1099, 1309, 1321, 2015, 2212, 2326, 2397, 3075
BstMCI CGRYCG 1 cut(s) 2135
BstNI CCWGG 4 cut(s) 467, 1427, 2244, 2709
BstNSI RCATGY 6 cut(s) 825, 946, 1636, 2928, 2970, 3400
BstPAI GACNNNNGTC 1 cut(s) 1220
BstSCI CCNGG 4 cut(s) 465, 1425, 2242, 2707
BstSFI CTRYAG 4 cut(s) 546, 1720, 1890, 2895
BstSLI GKGCMC 1 cut(s) 2785
BstUI CGCG 2 cut(s) 1616, 1881
BstV1I GCAGC 9 cut(s) 256, 259, 765, 1689, 1876, 1956, 2502, 3072, 3692
BstV2I GAAGAC 2 cut(s) 212, 1611
BstX2I RGATCY 5 cut(s) 1249, 2044, 2239, 2671, 3436
BstXI CCANNNNNNTGG 2 cut(s) 1426, 2971
BstYI RGATCY 5 cut(s) 1249, 2044, 2239, 2671, 3436
Bsu36I CCTNAGG 1 cut(s) 2252
BsuI GTATCC 2 cut(s) 562, 2536
BsuRI GGCC 7 cut(s) 88, 1820, 1901, 2081, 2783, 2975, 3215
BtgI CCRYGG 3 cut(s) 1036, 1748, 2976
BtgZI GCGATG 1 cut(s) 365
BtsI GCAGTG 1 cut(s) 1717
BtsIMutI CAGTG 4 cut(s) 1287, 1717, 2505, 2825
BveI ACCTGC 2 cut(s) 355, 1713
Cac8I GCNNGC 6 cut(s) 737, 823, 1365, 2601, 3202, 3427
CaiI CAGNNNCTG 4 cut(s) 277, 347, 715, 1889
CfoI GCGC 4 cut(s) 472, 596, 611, 1883
Cfr13I GGNCC 8 cut(s) 86, 344, 457, 1210, 2351, 2781, 2782, 3214
CseI GACGC 4 cut(s) 587, 1605, 2256, 3431
Csp6I GTAC 6 cut(s) 330, 860, 1388, 2117, 2721, 2943
CspCI CAANNNNNGTGG 2 cut(s) 3610, 3645
CviQI GTAC 6 cut(s) 330, 860, 1388, 2117, 2721, 2943
DdeI CTNAG 8 cut(s) 453, 1152, 1206, 1908, 2019, 2164, 2252, 2378
DraI TTTAAA 2 cut(s) 1137, 3342
DrdI GACNNNNNNGTC 2 cut(s) 2959, 3311
DriI GACNNNNNGTC 1 cut(s) 1330
DseDI GACNNNNNNGTC 2 cut(s) 2959, 3311
EaeI YGGCCR 3 cut(s) 1818, 1899, 2973
Eam1104I CTCTTC 4 cut(s) 2035, 3183, 3316, 3609
Eam1105I GACNNNNNGTC 1 cut(s) 1330
EarI CTCTTC 4 cut(s) 2035, 3183, 3316, 3609
Ecl136II GAGCTC 1 cut(s) 869
Eco130I CCWWGG 3 cut(s) 78, 1036, 2976
Eco24I GRGCYC 4 cut(s) 78, 871, 961, 2785
Eco31I GGTCTC 4 cut(s) 1099, 1309, 2397, 3075
Eco32I GATATC 1 cut(s) 2870
Eco47I GGWCC 4 cut(s) 344, 457, 1210, 2351
Eco53kI GAGCTC 1 cut(s) 869
Eco57I CTGAAG 2 cut(s) 404, 2877
Eco81I CCTNAGG 1 cut(s) 2252
EcoICRI GAGCTC 1 cut(s) 869
EcoO109I RGGNCCY 2 cut(s) 344, 3214
EcoRI GAATTC 2 cut(s) 1494, 2281
EcoRII CCWGG 4 cut(s) 465, 1425, 2242, 2707
EcoRV GATATC 1 cut(s) 2870
EcoT14I CCWWGG 3 cut(s) 78, 1036, 2976
EcoT38I GRGCYC 4 cut(s) 78, 871, 961, 2785
ErhI CCWWGG 3 cut(s) 78, 1036, 2976
FalI AAGNNNNNCTT 8 cut(s) 918, 950, 1081, 1113, 1218, 1250, 3201, 3233
FauNDI CATATG 1 cut(s) 2874
FbaI TGATCA 3 cut(s) 1060, 1626, 2074
FblI GTMKAC 1 cut(s) 545
FriOI GRGCYC 4 cut(s) 78, 871, 961, 2785
FspBI CTAG 7 cut(s) 48, 1116, 2034, 2619, 2768, 2915, 2940
FspI TGCGCA 1 cut(s) 610
GlaI GCGC 4 cut(s) 471, 595, 610, 1882
GsaI CCCAGC 1 cut(s) 2470
GsuI CTGGAG 2 cut(s) 195, 1455
HaeIII GGCC 7 cut(s) 88, 1820, 1901, 2081, 2783, 2975, 3215
HapII CCGG 2 cut(s) 1238, 1939
HgaI GACGC 4 cut(s) 587, 1605, 2256, 3431
HhaI GCGC 4 cut(s) 472, 596, 611, 1883
Hin1I GRCGYC 1 cut(s) 2248
Hin6I GCGC 4 cut(s) 470, 594, 609, 1881
HinP1I GCGC 4 cut(s) 470, 594, 609, 1881
HincII GTYRAC 2 cut(s) 1374, 3316
HindII GTYRAC 2 cut(s) 1374, 3316
HindIII AAGCTT 1 cut(s) 1243
HpaII CCGG 2 cut(s) 1238, 1939
HphI GGTGA 7 cut(s) 1025, 1088, 1415, 1703, 2287, 2839, 3355
Hpy166II GTNNAC 8 cut(s) 546, 1374, 1752, 2295, 2354, 2964, 3244, 3316
Hpy8I GTNNAC 8 cut(s) 546, 1374, 1752, 2295, 2354, 2964, 3244, 3316
Hpy99I CGWCG 1 cut(s) 3480
HpyAV CCTTC 4 cut(s) 379, 1059, 2451, 3326
HpyCH4III ACNGT 9 cut(s) 550, 759, 1303, 1349, 1507, 1924, 2116, 2500, 2536
HpyCH4IV ACGT 5 cut(s) 1028, 1070, 2662, 3127, 3645
HpyF3I CTNAG 8 cut(s) 453, 1152, 1206, 1908, 2019, 2164, 2252, 2378
HpySE526I ACGT 5 cut(s) 1028, 1070, 2662, 3127, 3645
Hsp92I GRCGYC 1 cut(s) 2248
HspAI GCGC 4 cut(s) 470, 594, 609, 1881
Kpn2I TCCGGA 2 cut(s) 1237, 1938
Ksp22I TGATCA 3 cut(s) 1060, 1626, 2074
LmnI GCTCC 7 cut(s) 73, 238, 846, 866, 1261, 1560, 3353
Lsp1109I GCAGC 9 cut(s) 256, 259, 765, 1689, 1876, 1956, 2502, 3072, 3692
MaeI CTAG 7 cut(s) 48, 1116, 2034, 2619, 2768, 2915, 2940
MaeII ACGT 5 cut(s) 1028, 1070, 2662, 3127, 3645
MaeIII GTNAC 7 cut(s) 97, 1141, 2530, 2860, 3270, 3361, 3685
MfeI CAATTG 4 cut(s) 153, 1584, 3357, 3609
MflI RGATCY 5 cut(s) 1249, 2044, 2239, 2671, 3436
MhlI GDGCHC 6 cut(s) 78, 382, 871, 961, 2785, 2827
MlsI TGGCCA 2 cut(s) 1901, 2975
MluI ACGCGT 1 cut(s) 1614
MluNI TGGCCA 2 cut(s) 1901, 2975
MlyI GAGTC 3 cut(s) 202, 1210, 3710
MmeI TCCRAC 1 cut(s) 2380
Mox20I TGGCCA 2 cut(s) 1901, 2975
MroI TCCGGA 2 cut(s) 1237, 1938
MroXI GAANNNNTTC 2 cut(s) 1070, 1494
MscI TGGCCA 2 cut(s) 1901, 2975
MslI CAYNNNNRTG 5 cut(s) 255, 1002, 1325, 1428, 2498
Msp20I TGGCCA 2 cut(s) 1901, 2975
MspA1I CMGCKG 1 cut(s) 2798
MspCI CTTAAG 1 cut(s) 3401
MspI CCGG 2 cut(s) 1238, 1939
MspR9I CCNGG 4 cut(s) 467, 1427, 2244, 2709
MunI CAATTG 4 cut(s) 153, 1584, 3357, 3609
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 4 cut(s) 467, 1427, 2244, 2709
MvnI CGCG 2 cut(s) 1616, 1881
NcoI CCATGG 2 cut(s) 1036, 2976
NdeI CATATG 1 cut(s) 2874
NlaIV GGNNCC 8 cut(s) 75, 175, 701, 1251, 2220, 2352, 2508, 2783
NmuCI GTSAC 3 cut(s) 97, 2860, 3361
NsbI TGCGCA 1 cut(s) 610
NspI RCATGY 6 cut(s) 825, 946, 1636, 2928, 2970, 3400
NspV TTCGAA 1 cut(s) 3465
OliI CACNNNNGTG 2 cut(s) 1428, 2498
PaeI GCATGC 1 cut(s) 825
PciI ACATGT 3 cut(s) 942, 1632, 2966
PcsI WCGNNNNNNNCGW 2 cut(s) 855, 3481
PctI GAATGC 1 cut(s) 498
PdmI GAANNNNTTC 2 cut(s) 1070, 1494
PfeI GAWTC 8 cut(s) 4, 302, 620, 994, 2090, 2844, 2918, 3480
PflMI CCANNNNNTGG 4 cut(s) 277, 466, 1952, 3263
PfoI TCCNGGA 1 cut(s) 2242
Ple19I CGATCG 1 cut(s) 2135
PleI GAGTC 3 cut(s) 202, 1210, 3709
PpsI GAGTC 3 cut(s) 202, 1210, 3709
Ppu21I YACGTR 1 cut(s) 3646
PpuMI RGGWCCY 1 cut(s) 344
PscI ACATGT 3 cut(s) 942, 1632, 2966
PshAI GACNNNNGTC 1 cut(s) 1220
PsiI TTATAA 2 cut(s) 2060, 2424
Psp124BI GAGCTC 1 cut(s) 871
Psp1406I AACGTT 1 cut(s) 1070
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 4 cut(s) 465, 1425, 2242, 2707
PspFI CCCAGC 1 cut(s) 2466
PspGI CCWGG 4 cut(s) 465, 1425, 2242, 2707
PspN4I GGNNCC 8 cut(s) 75, 175, 701, 1251, 2220, 2352, 2508, 2783
PspOMI GGGCCC 1 cut(s) 2781
PspPI GGNCC 8 cut(s) 86, 344, 457, 1210, 2351, 2781, 2782, 3214
PspPPI RGGWCCY 1 cut(s) 344
PstI CTGCAG 3 cut(s) 1724, 1894, 2899
PstNI CAGNNNCTG 4 cut(s) 277, 347, 715, 1889
PsuI RGATCY 5 cut(s) 1249, 2044, 2239, 2671, 3436
PvuI CGATCG 1 cut(s) 2135
PvuII CAGCTG 1 cut(s) 2798
RsaI GTAC 6 cut(s) 331, 861, 1389, 2118, 2722, 2944
RsaNI GTAC 6 cut(s) 330, 860, 1388, 2117, 2721, 2943
RseI CAYNNNNRTG 5 cut(s) 255, 1002, 1325, 1428, 2498
SacI GAGCTC 1 cut(s) 871
Sau96I GGNCC 8 cut(s) 86, 344, 457, 1210, 2351, 2781, 2782, 3214
ScaI AGTACT 1 cut(s) 1389
SchI GAGTC 3 cut(s) 202, 1210, 3710
ScrFI CCNGG 4 cut(s) 467, 1427, 2244, 2709
SduI GDGCHC 6 cut(s) 78, 382, 871, 961, 2785, 2827
SfcI CTRYAG 4 cut(s) 546, 1720, 1890, 2895
SfuI TTCGAA 1 cut(s) 3465
SinI GGWCC 4 cut(s) 344, 457, 1210, 2351
SmiMI CAYNNNNRTG 5 cut(s) 255, 1002, 1325, 1428, 2498
SmlI CTYRAG 2 cut(s) 1293, 3401
SmoI CTYRAG 2 cut(s) 1293, 3401
SpeI ACTAGT 1 cut(s) 1115
SphI GCATGC 1 cut(s) 825
SsiI CCGC 2 cut(s) 539, 1817
SspI AATATT 1 cut(s) 3576
SspMI CTAG 7 cut(s) 48, 1116, 2034, 2619, 2768, 2915, 2940
SstI GAGCTC 1 cut(s) 871
StyD4I CCNGG 4 cut(s) 465, 1425, 2242, 2707
StyI CCWWGG 3 cut(s) 78, 1036, 2976
TaaI ACNGT 9 cut(s) 550, 759, 1303, 1349, 1507, 1924, 2116, 2500, 2536
TaiI ACGT 5 cut(s) 1031, 1073, 2665, 3130, 3648
TaqI TCGA 6 cut(s) 811, 1461, 2812, 3372, 3465, 3478
TatI WGTACW 1 cut(s) 1387
TauI GCSGC 1 cut(s) 1820
TfiI GAWTC 8 cut(s) 4, 302, 620, 994, 2090, 2844, 2918, 3480
TscAI CASTG 4 cut(s) 1287, 1724, 2505, 2832
TseFI GTSAC 3 cut(s) 97, 2860, 3361
TseI GCWGC 9 cut(s) 244, 247, 778, 1677, 1889, 1969, 2490, 3060, 3680
Tsp45I GTSAC 3 cut(s) 97, 2860, 3361
TspGWI ACGGA 1 cut(s) 1737
TspRI CASTG 4 cut(s) 1287, 1724, 2505, 2832
Van91I CCANNNNNTGG 4 cut(s) 277, 466, 1952, 3263
Vha464I CTTAAG 1 cut(s) 3401
VpaK11BI GGWCC 4 cut(s) 344, 457, 1210, 2351
XapI RAATTY 9 cut(s) 410, 520, 534, 676, 1494, 2281, 2392, 2807, 3692
XbaI TCTAGA 3 cut(s) 2618, 2767, 2914
XceI RCATGY 6 cut(s) 825, 946, 1636, 2928, 2970, 3400
XmiI GTMKAC 1 cut(s) 545
XmnI GAANNNNTTC 2 cut(s) 1070, 1494
XspI CTAG 7 cut(s) 48, 1116, 2034, 2619, 2768, 2915, 2940
ZrmI AGTACT 1 cut(s) 1389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.