Rorug02G0455900

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003045
Physical Location & Seq
Reverse (-)
58554536 .. 58556197
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0455900.1

Sequence Viewer

Length: 606 bp
ATGATGGGCACAGATGAAAGCTCGAGGGTCAATCAAGGAGAACTATACTCCCCAGCTCACGCAATCAAAGTGATCAGCAACAAAGAAAACCATGAAAGCTCCGTGGACGTAGGTCAAGGAGAGTTGTACTCTCCGGCTCACGCAATCAAAGTAAGCAGCAACGAAGAAAACCGAGACGAAAAATCGTCGTCGGAGCAACCAAGGACGACGTCGAATGCGGCGGTGGGAGTGGTGGAAGCAACAAAGGAAGTAGCAATGGACATGAAGAGGAACTTGGGGGCCGTCAAGGATAAGATACTGGAGAAGCTTGCGGCACACGCACCTGCTGTTCCCGCTGATGCTTTGGACAACGTGCGCCACTTCTTGGAGAGTGTTGTCAAGGAAGTGACCGACGCGACCGGGGTGGCGCGTGGTGTCACCACGGATGCGTTGCACCGTATCAAAACTCAACTTGGTGACATGCTGCCCAACCTCTCTCCAGACGCCACCAAGAAGATGGTGGATGAAGCGGAAAAGGAATTATTAGCTACTAATGAAGATGGTGGCAGATGCAAAGATGAAAGAAACCACAAGGAAGGAAATCAAAAACAATCATCGAGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010271 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048509 GO:0048519 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071368 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

201

Amino Acids

21.8

Weight (kDa)

5.55

Isoelectric Point (pI)

37.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
AatII GACGTC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 364
AccII CGCG 2 cut(s) 395, 409
AciI CCGC 5 cut(s) 218, 221, 311, 333, 509
AcyI GRCGYC 2 cut(s) 209, 483
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 5 cut(s) 21, 56, 99, 307, 527
AluI AGCT 5 cut(s) 21, 56, 99, 307, 527
Alw26I GTCTC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 156, 463
AspLEI GCGC 2 cut(s) 357, 409
AspS9I GGNCC 1 cut(s) 279
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 409, 467
AvaI CYCGRG 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 168, 450
BccI CCATC 2 cut(s) 490, 533
BceAI ACGGC 1 cut(s) 266
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 4 cut(s) 157, 219, 312, 464
BlsI GCNGC 4 cut(s) 158, 220, 313, 465
Bme1390I CCNGG 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 328, 415, 539
BoxI GACNNNNGTC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 113, 145
BpmI CTGGAG 2 cut(s) 320, 462
BpuMI CCSGG 1 cut(s) 400
BsaHI GRCGYC 2 cut(s) 209, 483
BsaJI CCNNGG 4 cut(s) 102, 200, 399, 420
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 303
Bse3DI GCAATG 1 cut(s) 261
BseDI CCNNGG 4 cut(s) 102, 200, 399, 420
BseGI GGATG 2 cut(s) 430, 508
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 2 cut(s) 168, 450
BseYI CCCAGC 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 395, 409
Bsh1285I CGRYCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 399
BsiHKCI CYCGRG 1 cut(s) 22
BsiSI CCGG 2 cut(s) 134, 399
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 5 cut(s) 218, 221, 311, 333, 509
BspANI GGCC 1 cut(s) 281
BspFNI CGCG 2 cut(s) 395, 409
BspLI GGNNCC 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 4 cut(s) 102, 200, 399, 420
BssMI GATC 1 cut(s) 72
BssNI GRCGYC 2 cut(s) 209, 483
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 437
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 2 cut(s) 209, 483
BstC8I GCNNGC 1 cut(s) 309
BstDSI CCRYGG 2 cut(s) 102, 420
BstF5I GGATG 2 cut(s) 430, 508
BstFNI CGCG 2 cut(s) 395, 409
BstHHI GCGC 2 cut(s) 357, 409
BstKTI GATC 1 cut(s) 75
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 72
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 2 cut(s) 317, 332
BstNSI RCATGY 1 cut(s) 463
BstPAI GACNNNNGTC 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 11
BstUI CGCG 2 cut(s) 395, 409
BstV1I GCAGC 2 cut(s) 168, 450
BstXI CCANNNNNNTGG 1 cut(s) 496
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 102, 420
BtsCI GGATG 2 cut(s) 430, 508
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 1 cut(s) 309
CfoI GCGC 2 cut(s) 357, 409
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 2 cut(s) 401, 491
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 92, 262, 460
CviJI RGCY 8 cut(s) 21, 56, 99, 137, 281, 307, 527, 601
CviKI_1 RGCY 8 cut(s) 21, 56, 99, 137, 281, 307, 527, 601
CviQI GTAC 1 cut(s) 127
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 3 cut(s) 95, 265, 463
FaiI YATR 4 cut(s) 46, 93, 263, 461
FalI AAGNNNNNCTT 2 cut(s) 257, 289
FatI CATG 3 cut(s) 91, 261, 459
FauI CCCGC 1 cut(s) 340
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 4 cut(s) 157, 219, 312, 464
FokI GGATG 2 cut(s) 437, 515
Fsp4HI GCNGC 4 cut(s) 157, 219, 312, 464
GlaI GCGC 2 cut(s) 356, 408
GluI GCNGC 4 cut(s) 157, 219, 312, 464
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 2 cut(s) 320, 462
HaeIII GGCC 1 cut(s) 281
HapII CCGG 2 cut(s) 134, 399
HgaI GACGC 2 cut(s) 401, 491
HhaI GCGC 2 cut(s) 357, 409
Hin1I GRCGYC 2 cut(s) 209, 483
Hin1II CATG 3 cut(s) 95, 265, 463
Hin6I GCGC 2 cut(s) 355, 407
HinP1I GCGC 2 cut(s) 355, 407
HindIII AAGCTT 1 cut(s) 305
HpaII CCGG 2 cut(s) 134, 399
HphI GGTGA 2 cut(s) 409, 467
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 5 cut(s) 190, 193, 211, 214, 395
HpyAV CCTTC 1 cut(s) 569
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 3 cut(s) 108, 209, 351
HpyCH4V TGCA 2 cut(s) 433, 552
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 332
HpySE526I ACGT 3 cut(s) 108, 209, 351
Hsp92I GRCGYC 2 cut(s) 209, 483
Hsp92II CATG 3 cut(s) 95, 265, 463
HspAI GCGC 2 cut(s) 355, 407
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 2 cut(s) 104, 193
LpnPI CCDG 6 cut(s) 66, 147, 284, 336, 412, 492
Lsp1109I GCAGC 2 cut(s) 168, 450
LweI GCATC 3 cut(s) 328, 415, 539
MaeII ACGT 3 cut(s) 108, 209, 351
MaeIII GTNAC 3 cut(s) 385, 415, 455
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 4 cut(s) 176, 277, 505, 548
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 518
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 4 cut(s) 18, 261, 482, 591
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 2 cut(s) 134, 399
MspR9I CCNGG 1 cut(s) 400
Mva1269I GAATGC 1 cut(s) 220
MvnI CGCG 2 cut(s) 395, 409
MwoI GCNNNNNNNGC 2 cut(s) 317, 332
NciI CCSGG 1 cut(s) 400
NdeII GATC 1 cut(s) 72
NlaIII CATG 3 cut(s) 95, 265, 463
NlaIV GGNNCC 1 cut(s) 280
NmuCI GTSAC 3 cut(s) 385, 415, 455
NspI RCATGY 1 cut(s) 463
PaeR7I CTCGAG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 331
PctI GAATGC 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 4 cut(s) 158, 220, 313, 465
PshAI GACNNNNGTC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 279
PspXI VCTCGAGB 1 cut(s) 22
PsyI GACNNNGTC 1 cut(s) 208
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 4 cut(s) 157, 219, 312, 464
Sau3AI GATC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 279
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 3 cut(s) 328, 415, 539
Sfr274I CTCGAG 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 1 cut(s) 518
SsiI CCGC 5 cut(s) 218, 221, 311, 333, 509
StyD4I CCNGG 1 cut(s) 398
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 3 cut(s) 111, 212, 354
TaqI TCGA 3 cut(s) 23, 212, 596
TaqII GACCGA 1 cut(s) 404
TasI AATT 1 cut(s) 518
TatI WGTACW 1 cut(s) 126
TauI GCSGC 2 cut(s) 221, 314
TseFI GTSAC 3 cut(s) 385, 415, 455
TseI GCWGC 2 cut(s) 156, 463
Tsp45I GTSAC 3 cut(s) 385, 415, 455
TspDTI ATGAA 6 cut(s) 30, 108, 278, 519, 549, 573
TspGWI ACGGA 2 cut(s) 91, 437
Tth111I GACNNNGTC 1 cut(s) 208
Van91I CCANNNNNTGG 1 cut(s) 364
XceI RCATGY 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 2 cut(s) 493, 496
XhoI CTCGAG 1 cut(s) 22
ZraI GACGTC 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.