FvH4_6g41180

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003045
Physical Location & Seq
Forward (+)
32440722 .. 32450723
10002 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41180.t2

Sequence Viewer

Length: 3384 bp
ATGCTTTTAACTGATGGCATTTCCTGTGCTCTGAAGGCAGTGTGTTCAGATGAGACAGAATTTCAAGAGCATCATAAATGGGTGGGAGAATATGTTGAAGCCGAGGACCAATGCCCGGTTCAAGAACTAAACATCCCCAGGATGCTTGACCTATCATTGCTACAAGAAAATTCATTGGCAAAAGTTCCGCAGTCTACAGTATCCACTAATAGGATTTGTCAAAAGGAAGCATTGGGATCAGGCGCAAAGGTAGAGTGCGCAAAAGAGGATTCTCATATATATTGTTGTTTGATGAAGGGATGTTCATGGGTTTTTGTTGGGATGATTTTGTGCTACCAATTATCTGGTTTTTCTTTAAAATTATGGAGGAACCAGAAACAGAAGCTGGTTCATGAGTGCTCCTGCCAAAAGAAAATGGTTCAAGAACAGTCAGTCGGTAGTAGGAAGCAGCCAGAGAAACAGCAACAACAAACTCAAAGTCCTCGAAAGGTTGCATGCACGTGGAGGAAGAAGCTCCTAATCGTATTTGTCTTCATTGGAGTTATTACGTCAATTTCGTTATTTTTCCACTTGAATGAAAGAGATTTTTTGTGGAGAGAAGAAACACTTGCCAACATGTGTGATGAACGAGCCCGAATGTTGCAAGATCAGTTCAATGTGAGCCTGAATCATGTTCATGCTTTAGCTATTCTTGTCTCCACATTTCACCATGGGAAGCATCCGTCTGCCATTGATCAGAAAACATTCGGTGAATACACAGAAAGAACAGCTTTTGAGAGACCACTTACTAGTGGTGTTGCTTATGCTTTAAAAGTTACTCATGCTGAGAGGGAACAATTTGAGAGGGAACATGGATGGACAATAAAGAAAATGGAAACTGATGACCAGACTCTTGTCCAAGATTTTCTTCCAGAAAGCTTGGATCCTGCCCCTATTCAAGATGAATATGCACCAGTGATATTTTCTCAAGAAACGGTCTCCCATATTGTCTCAATTGACATGATGTCAGGAAAGGATGACCGTGAGAACATCTTGCGAGCAAGGTCAACAGGAAAGGGAGTACTGACTTCCCCTTTTAAGCTATTGAAATCCAATCACTTGGGTGTTGTTCTCACATTTGCTGTGTATAATATCGACTTGCCTCCAGATGCCACATCAGAAGAACGAATTCAAGCGACTGTGGGGTATCTAGGTGCATCTTACGATGTTCCATCTCTTGTGGAGAAGCTCCTGCACCAACTTGCGAGCAAGCAAACAATCGTTGTTAATGTTTATGATACAACTAACGCATCTTATCTGATCAACATGTATGGAACTGATGTTGTTGATACTGGGCTGTTGCACATTAGCGGCCTTGATTTTGGTGATCCACAACGCAAACATGAAATGCACTGCAGGTTTAAGCATAAACCTCCTTTTCCATGGACGGCAGTAAGTGCATCAGTTGGAGTCCTAGTAATTACCTTGCTAGTTGGTCATATATTTCATGCGGCCATAAGCCGAATAGCAAAGGTAGAGGCAGACTTTTGTGAGATGATGGAACTCAAAGTTCGCGCAGAAGCTGCAGATGTGGCCAAATCTCAGTTCCTTGCAACTGTTTCCCATGAAATCCGGACACCAATGAATGGTGTTTTAGGTATGCTGCAAATGCTGATGGACACAAATCTTGATGCAAATCAACAAGATTATGCTGAGACTGCTCATGCTAGTGGAAGAGATCTTATCTCACTTATAAATGAGGTTCTTGATCAAGCCAAGATAGAATCAGGACGGCTGGAACTTGAAACTTTACCTTTTGATCTACGATCGGTGCTTGATAATGTGCTATCACTTTTCTCAGGAAAAACGAATGAAAAAGGGATTGAGTTGGCTGTTTATGTCTCCAATTTGGTTCCGGAAGTTGTCATTGGAGATCCAGGACGCCTTCGGCAGATAATTACGAACTTGGTTGGGAATTGTATCAAGTTCACCCATGACAAAGGACATATATTTGTCTCGGTGCATCTGGCAGATGAAGTGAGGGGTCCACCTGATCTTATGGATGAAGTTCTAAGACAAGGCTTGAATTTAGTTGGAGACCACTCGAACAAAACTTATAATACATTGAGTGGCTTTCCTGTGGTTGATAGATGGAAAAGCTGGGAGCGTTTCAAAACTTTAAGCAGCACGACAGTGGAGGAACCTGATATGATAAAATTACTTGTTACAGTTGAGGATACTGGTGTAGGTATTCCATTAGATGCACAAAGTCGCATCTTCACACCTTTTATGCAGGCTGATAGTTCCACTTCTAGAACTTATGGTGGTACTGGAATTGGATTGAGCATTAGTAAACGTCTGGTAGATCTCATGTGTGGGGAGATAGGGTTTGTGAGTGAACCTGGCATTGGAAGTACCTTTTCATTTACCGGGTCATTTGAGAGAGGAAATACAAGTTCTCTAGATACGAAGTGGCCCCAGTATGAACCAGCTGTGTCAGAATTTCAAGGCCTGAGAGCACTGGTAATAGATAAGAGAATCACCCGAACTGAAGTCACAAGATATCATATGCAGAGATTGGGGATAACTGCAGATATTGCTTCCAATCTAGAATCAGCATGCTCTTATCTATCTAGTACGAGCAAGACAAGCCTATCCACATGTTTGGCCATGGTTCTTATCGACAAAGATGTTTGGGATAAAGAAACTGGTCTTACATTCCATCAGTCAGTTAAAGAGCATAGGCAAAATTGCAGCGTGGGGTCTCCCTTGAACTTTCCGAAGATATTTCTCCTGGCTACCTCCATTAGTGCTACTGAACGTAATGAACTAAAATCTTCTGGTCTTGTAGATAATGTATTGATGAAGCCTCTTCGGTTAAGTGTCTTAATTGCTTGCTTCCAAGAGGCCCTTGTAAGCGGTAAAAAGAGGCTTGTGAACATAAAAAAACCAACTCTTGGAAAGTTACTACAAGGCAGGAAGATTTTGGTAGTGGATGATAATGCAGTCAACAGAAGAGTGGCAGAAGGTGCTTTAAAGAAATATGGAGCAATTGTCACCTGTGTCGATAGTGGGAAGACTGCTTTAGACATGCTTAAGCCACCTCACAACTTTGACGCTTGCTTTATGGACCTCCAAATGCCAGAAATGGACGGATTCGAAGCAACTCGTCGAATCCGATGTATGGAGAATGAGGTAAATGAGAAAATTGCATCTGGGGAAGCACCAATCGAGATGTTTGGCAATGTGGAATATTGGCACACACCAATATTAGCCATGACAGCTGATGTGATTCAGGCTTCAAATGAAGAGTGCAAGAAGTGTGGGATGGATGACTACGTGTCAAAGCCATTTGAAGAAGAACAATTATATACAGCAGTAGCAAAATTCTTTGAGTCTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010271 GO:0010959 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048509 GO:0048519 GO:0048580 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071368 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

1128

Amino Acids

125.84

Weight (kDa)

5.79

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 359 - 548 3.9e-34 CHASE domain
HisKA PF00512 641 - 706 9.3e-20 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 847 - 919 1.9e-17 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Receiver_CRE1 PF24896 942 - 1080 5.7e-37 AHK4/CRE1/WOL first receiver domain
Response_reg PF00072 1104 - 1236 1.6e-19 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1733, 2097
Acc16I TGCGCA 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 1386
AccB7I CCANNNNNTGG 2 cut(s) 1625, 2936
AccI GTMKAC 1 cut(s) 194
AccII CGCG 1 cut(s) 1554
AccIII TCCGGA 2 cut(s) 1611, 1894
AciI CCGC 4 cut(s) 188, 1350, 1490, 2898
AclWI GGATC 5 cut(s) 244, 917, 930, 1361, 1907
AcoI YGGCCR 3 cut(s) 1491, 1572, 2646
AcsI RAATTY 6 cut(s) 59, 169, 1167, 2065, 2480, 3365
AcuI CTGAAG 2 cut(s) 53, 2550
AcvI CACGTG 1 cut(s) 501
AcyI GRCGYC 1 cut(s) 1921
AfaI GTAC 4 cut(s) 1062, 2308, 2395, 2617
AfiI CCNNNNNNNGG 6 cut(s) 115, 210, 1625, 2387, 2936, 3163
AflII CTTAAG 1 cut(s) 3074
AflIII ACRYGT 4 cut(s) 615, 1305, 2639, 3318
AhdI GACNNNNNGTC 2 cut(s) 1003, 3319
AhlI ACTAGT 1 cut(s) 788
AjnI CCWGG 4 cut(s) 137, 1915, 2380, 2772
AleI CACNNNNGTG 2 cut(s) 1101, 2171
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
Alw21I GWGCWC 3 cut(s) 31, 401, 2500
AlwI GGATC 5 cut(s) 244, 917, 930, 1361, 1907
AlwNI CAGNNNCTG 2 cut(s) 385, 1562
Aor13HI TCCGGA 2 cut(s) 1611, 1894
AoxI GGCC 7 cut(s) 1351, 1491, 1572, 2453, 2488, 2646, 2886
ApeKI GCWGC 5 cut(s) 448, 1562, 1642, 2163, 2733
ApoI RAATTY 6 cut(s) 59, 169, 1167, 2065, 2480, 3365
ArsI GACNNNNNNTTYG 2 cut(s) 463, 495
Asp700I GAANNNNTTC 2 cut(s) 743, 1167
AspLEI GCGC 3 cut(s) 245, 260, 1556
AspS9I GGNCC 5 cut(s) 106, 2024, 2454, 2887, 3109
AsuC2I CCSGG 2 cut(s) 116, 2410
AsuHPI GGTGA 6 cut(s) 698, 761, 1376, 1960, 2512, 3028
AsuII TTCGAA 1 cut(s) 3138
AvaII GGWCC 3 cut(s) 106, 2024, 3109
BaeI ACNNNNGTAYC 2 cut(s) 2208, 2241
BalI TGGCCA 2 cut(s) 1574, 2648
BamHI GGATCC 1 cut(s) 922
BanII GRGCYC 1 cut(s) 634
BbrPI CACGTG 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 523, 3062
Bbv12I GWGCWC 3 cut(s) 31, 401, 2500
BbvI GCAGC 5 cut(s) 460, 1549, 1629, 2175, 2745
BccI CCATC 8 cut(s) 8, 849, 1219, 1531, 1648, 2124, 2709, 3301
BceAI ACGGC 2 cut(s) 1443, 1787
BciT130I CCWGG 4 cut(s) 139, 1917, 2382, 2774
BciVI GTATCC 2 cut(s) 211, 2209
BclI TGATCA 3 cut(s) 733, 1299, 1747
BcnI CCSGG 2 cut(s) 116, 2410
BcuI ACTAGT 1 cut(s) 788
BfaI CTAG 9 cut(s) 789, 1190, 1454, 1469, 1707, 2292, 2441, 2588, 2613
BfmI CTRYAG 4 cut(s) 195, 1393, 1563, 2568
BfrI CTTAAG 1 cut(s) 3074
BfuAI ACCTGC 1 cut(s) 1386
BfuI GTATCC 2 cut(s) 211, 2209
BglII AGATCT 2 cut(s) 1717, 2344
BisI GCNGC 7 cut(s) 449, 1351, 1491, 1563, 1643, 2164, 2734
BlsI GCNGC 7 cut(s) 450, 1352, 1492, 1564, 1644, 2165, 2735
BmcAI AGTACT 1 cut(s) 1062
Bme1390I CCNGG 6 cut(s) 116, 139, 1917, 2382, 2410, 2774
Bme18I GGWCC 3 cut(s) 106, 2024, 3109
BmeRI GACNNNNNGTC 2 cut(s) 1003, 3319
BmgT120I GGNCC 5 cut(s) 106, 2024, 2454, 2887, 3109
BmiI GGNNCC 6 cut(s) 371, 924, 1893, 2025, 2181, 2456
BmrFI CCNGG 6 cut(s) 116, 139, 1917, 2382, 2410, 2774
BmrI ACTGGG 2 cut(s) 1341, 2452
BmuI ACTGGG 2 cut(s) 1341, 2452
BoxI GACNNNNGTC 1 cut(s) 893
BpiI GAAGAC 2 cut(s) 523, 3062
BpmI CTGGAG 1 cut(s) 1128
Bpu14I TTCGAA 1 cut(s) 3138
BpuEI CTTGAG 1 cut(s) 951
BpuMI CCSGG 2 cut(s) 116, 2410
BsaAI YACGTR 2 cut(s) 501, 3319
BsaBI GATNNNNATC 1 cut(s) 1674
BsaHI GRCGYC 1 cut(s) 1921
BsaI GGTCTC 4 cut(s) 772, 982, 2070, 2748
BsaJI CCNNGG 5 cut(s) 102, 137, 709, 1421, 2649
BsaWI WCCGGW 2 cut(s) 1611, 1894
BsaXI ACNNNNNCTCC 8 cut(s) 78, 108, 1440, 1470, 2351, 2381, 3018, 3048
Bsc4I CCNNNNNNNGG 6 cut(s) 115, 210, 1625, 2387, 2936, 3163
Bse1I ACTGG 7 cut(s) 953, 1336, 2224, 2314, 2458, 2505, 2692
Bse3DI GCAATG 2 cut(s) 155, 3229
Bse8I GATNNNNATC 1 cut(s) 1674
BseAI TCCGGA 2 cut(s) 1611, 1894
BseBI CCWGG 4 cut(s) 139, 1917, 2382, 2774
BseDI CCNNGG 5 cut(s) 102, 137, 709, 1421, 2649
BseJI GATNNNNATC 1 cut(s) 1674
BseLI CCNNNNNNNGG 6 cut(s) 115, 210, 1625, 2387, 2936, 3163
BseMI GCAATG 2 cut(s) 155, 3229
BseMII CTCAG 5 cut(s) 816, 1595, 1683, 1851, 2483
BseNI ACTGG 7 cut(s) 953, 1336, 2224, 2314, 2458, 2505, 2692
BseXI GCAGC 5 cut(s) 460, 1549, 1629, 2175, 2745
BseYI CCCAGC 1 cut(s) 2139
BsgI GTGCAG 1 cut(s) 1217
Bsh1236I CGCG 1 cut(s) 1554
Bsh1285I CGRYCG 1 cut(s) 1808
BshFI GGCC 7 cut(s) 1353, 1493, 1574, 2455, 2490, 2648, 2888
BsiEI CGRYCG 1 cut(s) 1808
BsiHKAI GWGCWC 3 cut(s) 31, 401, 2500
BsiSI CCGG 4 cut(s) 116, 1612, 1895, 2409
BslI CCNNNNNNNGG 6 cut(s) 115, 210, 1625, 2387, 2936, 3163
BsnI GGCC 7 cut(s) 1353, 1493, 1574, 2455, 2490, 2648, 2888
Bso31I GGTCTC 4 cut(s) 772, 982, 2070, 2748
Bsp119I TTCGAA 1 cut(s) 3138
Bsp1286I GDGCHC 4 cut(s) 31, 401, 634, 2500
Bsp13I TCCGGA 2 cut(s) 1611, 1894
Bsp19I CCATGG 3 cut(s) 709, 1421, 2649
BspACI CCGC 4 cut(s) 188, 1350, 1490, 2898
BspANI GGCC 7 cut(s) 1353, 1493, 1574, 2455, 2490, 2648, 2888
BspCNI CTCAG 5 cut(s) 817, 1594, 1684, 1850, 2484
BspEI TCCGGA 2 cut(s) 1611, 1894
BspFNI CGCG 1 cut(s) 1554
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 6 cut(s) 371, 924, 1893, 2025, 2181, 2456
BspMAI CTGCAG 3 cut(s) 1397, 1567, 2572
BspMI ACCTGC 1 cut(s) 1386
BspPI GGATC 5 cut(s) 244, 917, 930, 1361, 1907
BspT104I TTCGAA 1 cut(s) 3138
BspTI CTTAAG 1 cut(s) 3074
BspTNI GGTCTC 4 cut(s) 772, 982, 2070, 2748
BsrDI GCAATG 2 cut(s) 155, 3229
BsrI ACTGG 7 cut(s) 953, 1336, 2224, 2314, 2458, 2505, 2692
BssECI CCNNGG 5 cut(s) 102, 137, 709, 1421, 2649
BssNI GRCGYC 1 cut(s) 1921
BssT1I CCWWGG 3 cut(s) 709, 1421, 2649
Bst2UI CCWGG 4 cut(s) 139, 1917, 2382, 2774
Bst4CI ACNGT 8 cut(s) 199, 429, 976, 1022, 1180, 1597, 2173, 2209
Bst6I CTCTTC 4 cut(s) 1708, 2856, 2989, 3282
BstACI GRCGYC 1 cut(s) 1921
BstAFI CTTAAG 1 cut(s) 3074
BstAPI GCANNNNNTGC 4 cut(s) 1436, 1562, 2576, 3008
BstBAI YACGTR 2 cut(s) 501, 3319
BstBI TTCGAA 1 cut(s) 3138
BstC8I GCNNGC 8 cut(s) 496, 1038, 1246, 1250, 2274, 2599, 2875, 3100
BstDEI CTNAG 6 cut(s) 825, 1581, 1692, 1837, 2051, 2492
BstDSI CCRYGG 3 cut(s) 709, 1421, 2649
BstFNI CGCG 1 cut(s) 1554
BstHHI GCGC 3 cut(s) 245, 260, 1556
BstMCI CGRYCG 1 cut(s) 1808
BstNI CCWGG 4 cut(s) 139, 1917, 2382, 2774
BstNSI RCATGY 6 cut(s) 498, 619, 1309, 2601, 2643, 3073
BstPAI GACNNNNGTC 1 cut(s) 893
BstSCI CCNGG 6 cut(s) 114, 137, 1915, 2380, 2408, 2772
BstSFI CTRYAG 4 cut(s) 195, 1393, 1563, 2568
BstUI CGCG 1 cut(s) 1554
BstV1I GCAGC 5 cut(s) 460, 1549, 1629, 2175, 2745
BstV2I GAAGAC 2 cut(s) 523, 3062
BstX2I RGATCY 4 cut(s) 922, 1717, 1912, 2344
BstXI CCANNNNNNTGG 3 cut(s) 344, 1099, 2644
BstYI RGATCY 4 cut(s) 922, 1717, 1912, 2344
BsuI GTATCC 2 cut(s) 211, 2209
BsuRI GGCC 7 cut(s) 1353, 1493, 1574, 2455, 2490, 2648, 2888
BtgI CCRYGG 3 cut(s) 709, 1421, 2649
BtsI GCAGTG 2 cut(s) 45, 1390
BtsIMutI CAGTG 5 cut(s) 45, 960, 1390, 2178, 2498
BveI ACCTGC 1 cut(s) 1386
Cac8I GCNNGC 8 cut(s) 496, 1038, 1246, 1250, 2274, 2599, 2875, 3100
CaiI CAGNNNCTG 2 cut(s) 385, 1562
CciI TCATGA 1 cut(s) 391
CfoI GCGC 3 cut(s) 245, 260, 1556
Cfr13I GGNCC 5 cut(s) 106, 2024, 2454, 2887, 3109
CseI GACGC 2 cut(s) 1929, 3104
Csp6I GTAC 4 cut(s) 1061, 2307, 2394, 2616
CspCI CAANNNNNGTGG 2 cut(s) 3283, 3318
CviQI GTAC 4 cut(s) 1061, 2307, 2394, 2616
DdeI CTNAG 6 cut(s) 825, 1581, 1692, 1837, 2051, 2492
DraI TTTAAA 3 cut(s) 357, 810, 3015
DriI GACNNNNNGTC 2 cut(s) 1003, 3319
EaeI YGGCCR 3 cut(s) 1491, 1572, 2646
Eam1104I CTCTTC 4 cut(s) 1708, 2856, 2989, 3282
Eam1105I GACNNNNNGTC 2 cut(s) 1003, 3319
EarI CTCTTC 4 cut(s) 1708, 2856, 2989, 3282
Eco130I CCWWGG 3 cut(s) 709, 1421, 2649
Eco147I AGGCCT 1 cut(s) 2490
Eco24I GRGCYC 1 cut(s) 634
Eco31I GGTCTC 4 cut(s) 772, 982, 2070, 2748
Eco32I GATATC 1 cut(s) 2543
Eco47I GGWCC 3 cut(s) 106, 2024, 3109
Eco57I CTGAAG 2 cut(s) 53, 2550
Eco72I CACGTG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 2887
EcoRI GAATTC 1 cut(s) 1167
EcoRII CCWGG 4 cut(s) 137, 1915, 2380, 2772
EcoRV GATATC 1 cut(s) 2543
EcoT14I CCWWGG 3 cut(s) 709, 1421, 2649
EcoT38I GRGCYC 1 cut(s) 634
ErhI CCWWGG 3 cut(s) 709, 1421, 2649
FalI AAGNNNNNCTT 8 cut(s) 591, 623, 754, 786, 891, 923, 2874, 2906
FauNDI CATATG 1 cut(s) 2547
FbaI TGATCA 3 cut(s) 733, 1299, 1747
FblI GTMKAC 1 cut(s) 194
Fnu4HI GCNGC 7 cut(s) 449, 1351, 1491, 1563, 1643, 2164, 2734
FriOI GRGCYC 1 cut(s) 634
Fsp4HI GCNGC 7 cut(s) 449, 1351, 1491, 1563, 1643, 2164, 2734
FspBI CTAG 9 cut(s) 789, 1190, 1454, 1469, 1707, 2292, 2441, 2588, 2613
FspI TGCGCA 1 cut(s) 259
GlaI GCGC 3 cut(s) 244, 259, 1555
GluI GCNGC 7 cut(s) 449, 1351, 1491, 1563, 1643, 2164, 2734
GsaI CCCAGC 1 cut(s) 2143
GsuI CTGGAG 1 cut(s) 1128
HaeIII GGCC 7 cut(s) 1353, 1493, 1574, 2455, 2490, 2648, 2888
HapII CCGG 4 cut(s) 116, 1612, 1895, 2409
HgaI GACGC 2 cut(s) 1929, 3104
HhaI GCGC 3 cut(s) 245, 260, 1556
Hin1I GRCGYC 1 cut(s) 1921
Hin6I GCGC 3 cut(s) 243, 258, 1554
HinP1I GCGC 3 cut(s) 243, 258, 1554
HincII GTYRAC 2 cut(s) 1047, 2989
HindII GTYRAC 2 cut(s) 1047, 2989
HindIII AAGCTT 1 cut(s) 916
HpaII CCGG 4 cut(s) 116, 1612, 1895, 2409
HphI GGTGA 6 cut(s) 698, 761, 1376, 1960, 2512, 3028
Hpy166II GTNNAC 8 cut(s) 195, 1047, 1968, 2027, 2333, 2378, 2917, 2989
Hpy188I TCNGA 8 cut(s) 33, 49, 738, 1159, 1299, 2479, 2760, 3158
Hpy8I GTNNAC 8 cut(s) 195, 1047, 1968, 2027, 2333, 2378, 2917, 2989
Hpy99I CGWCG 1 cut(s) 3153
HpyAV CCTTC 4 cut(s) 28, 289, 1934, 2999
HpyCH4III ACNGT 8 cut(s) 199, 429, 976, 1022, 1180, 1597, 2173, 2209
HpyCH4IV ACGT 5 cut(s) 500, 548, 2335, 2800, 3318
HpyF3I CTNAG 6 cut(s) 825, 1581, 1692, 1837, 2051, 2492
HpySE526I ACGT 5 cut(s) 500, 548, 2335, 2800, 3318
Hsp92I GRCGYC 1 cut(s) 1921
HspAI GCGC 3 cut(s) 243, 258, 1554
Kpn2I TCCGGA 2 cut(s) 1611, 1894
Ksp22I TGATCA 3 cut(s) 733, 1299, 1747
LmnI GCTCC 5 cut(s) 404, 519, 1233, 2143, 3026
Lsp1109I GCAGC 5 cut(s) 460, 1549, 1629, 2175, 2745
MaeI CTAG 9 cut(s) 789, 1190, 1454, 1469, 1707, 2292, 2441, 2588, 2613
MaeII ACGT 5 cut(s) 500, 548, 2335, 2800, 3318
MaeIII GTNAC 5 cut(s) 814, 2203, 2533, 2943, 3034
MfeI CAATTG 2 cut(s) 993, 3030
MflI RGATCY 4 cut(s) 922, 1717, 1912, 2344
MhlI GDGCHC 4 cut(s) 31, 401, 634, 2500
MlsI TGGCCA 2 cut(s) 1574, 2648
MluNI TGGCCA 2 cut(s) 1574, 2648
MlyI GAGTC 3 cut(s) 883, 1458, 3383
MmeI TCCRAC 2 cut(s) 1426, 2053
Mox20I TGGCCA 2 cut(s) 1574, 2648
MroI TCCGGA 2 cut(s) 1611, 1894
MroXI GAANNNNTTC 2 cut(s) 743, 1167
MscI TGGCCA 2 cut(s) 1574, 2648
MslI CAYNNNNRTG 6 cut(s) 499, 573, 675, 1101, 1707, 2171
Msp20I TGGCCA 2 cut(s) 1574, 2648
MspA1I CMGCKG 2 cut(s) 2471, 3263
MspCI CTTAAG 1 cut(s) 3074
MspI CCGG 4 cut(s) 116, 1612, 1895, 2409
MspR9I CCNGG 6 cut(s) 116, 139, 1917, 2382, 2410, 2774
MunI CAATTG 2 cut(s) 993, 3030
MvaI CCWGG 4 cut(s) 139, 1917, 2382, 2774
MvnI CGCG 1 cut(s) 1554
NciI CCSGG 2 cut(s) 116, 2410
NcoI CCATGG 3 cut(s) 709, 1421, 2649
NdeI CATATG 1 cut(s) 2547
NlaIV GGNNCC 6 cut(s) 371, 924, 1893, 2025, 2181, 2456
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 2533, 3034
NsbI TGCGCA 1 cut(s) 259
NspI RCATGY 6 cut(s) 498, 619, 1309, 2601, 2643, 3073
NspV TTCGAA 1 cut(s) 3138
OliI CACNNNNGTG 2 cut(s) 1101, 2171
PaeI GCATGC 2 cut(s) 498, 2601
PagI TCATGA 1 cut(s) 391
PceI AGGCCT 1 cut(s) 2490
PciI ACATGT 3 cut(s) 615, 1305, 2639
PcsI WCGNNNNNNNCGW 2 cut(s) 554, 3154
PdmI GAANNNNTTC 2 cut(s) 743, 1167
PfeI GAWTC 8 cut(s) 269, 667, 1763, 2517, 2591, 3135, 3153, 3271
PflMI CCANNNNNTGG 2 cut(s) 1625, 2936
PfoI TCCNGGA 1 cut(s) 1915
PkrI GCNGC 7 cut(s) 450, 1352, 1492, 1564, 1644, 2165, 2735
Ple19I CGATCG 1 cut(s) 1808
PleI GAGTC 3 cut(s) 883, 1457, 3382
PmaCI CACGTG 1 cut(s) 501
PmlI CACGTG 1 cut(s) 501
PpsI GAGTC 3 cut(s) 883, 1457, 3382
Ppu21I YACGTR 2 cut(s) 501, 3319
PscI ACATGT 3 cut(s) 615, 1305, 2639
PshAI GACNNNNGTC 1 cut(s) 893
PsiI TTATAA 2 cut(s) 1733, 2097
Psp6I CCWGG 4 cut(s) 137, 1915, 2380, 2772
PspCI CACGTG 1 cut(s) 501
PspFI CCCAGC 1 cut(s) 2139
PspGI CCWGG 4 cut(s) 137, 1915, 2380, 2772
PspN4I GGNNCC 6 cut(s) 371, 924, 1893, 2025, 2181, 2456
PspPI GGNCC 5 cut(s) 106, 2024, 2454, 2887, 3109
PstI CTGCAG 3 cut(s) 1397, 1567, 2572
PstNI CAGNNNCTG 2 cut(s) 385, 1562
PsuI RGATCY 4 cut(s) 922, 1717, 1912, 2344
PvuI CGATCG 1 cut(s) 1808
PvuII CAGCTG 2 cut(s) 2471, 3263
RsaI GTAC 4 cut(s) 1062, 2308, 2395, 2617
RsaNI GTAC 4 cut(s) 1061, 2307, 2394, 2616
RseI CAYNNNNRTG 6 cut(s) 499, 573, 675, 1101, 1707, 2171
SatI GCNGC 7 cut(s) 449, 1351, 1491, 1563, 1643, 2164, 2734
Sau96I GGNCC 5 cut(s) 106, 2024, 2454, 2887, 3109
ScaI AGTACT 1 cut(s) 1062
SchI GAGTC 3 cut(s) 883, 1458, 3383
ScrFI CCNGG 6 cut(s) 116, 139, 1917, 2382, 2410, 2774
SduI GDGCHC 4 cut(s) 31, 401, 634, 2500
SfcI CTRYAG 4 cut(s) 195, 1393, 1563, 2568
SfuI TTCGAA 1 cut(s) 3138
SinI GGWCC 3 cut(s) 106, 2024, 3109
SmiMI CAYNNNNRTG 6 cut(s) 499, 573, 675, 1101, 1707, 2171
SmlI CTYRAG 2 cut(s) 966, 3074
SmoI CTYRAG 2 cut(s) 966, 3074
SpeI ACTAGT 1 cut(s) 788
SphI GCATGC 2 cut(s) 498, 2601
SseBI AGGCCT 1 cut(s) 2490
SsiI CCGC 4 cut(s) 188, 1350, 1490, 2898
SspI AATATT 2 cut(s) 3233, 3249
SspMI CTAG 9 cut(s) 789, 1190, 1454, 1469, 1707, 2292, 2441, 2588, 2613
StuI AGGCCT 1 cut(s) 2490
StyD4I CCNGG 6 cut(s) 114, 137, 1915, 2380, 2408, 2772
StyI CCWWGG 3 cut(s) 709, 1421, 2649
TaaI ACNGT 8 cut(s) 199, 429, 976, 1022, 1180, 1597, 2173, 2209
TaiI ACGT 5 cut(s) 503, 551, 2338, 2803, 3321
TaqI TCGA 8 cut(s) 484, 1134, 2084, 2661, 3045, 3138, 3151, 3210
TatI WGTACW 1 cut(s) 1060
TauI GCSGC 2 cut(s) 1353, 1493
TfiI GAWTC 8 cut(s) 269, 667, 1763, 2517, 2591, 3135, 3153, 3271
TscAI CASTG 5 cut(s) 45, 960, 1397, 2178, 2505
TseFI GTSAC 2 cut(s) 2533, 3034
TseI GCWGC 5 cut(s) 448, 1562, 1642, 2163, 2733
Tsp45I GTSAC 2 cut(s) 2533, 3034
TspGWI ACGGA 2 cut(s) 711, 3147
TspRI CASTG 5 cut(s) 45, 960, 1397, 2178, 2505
Van91I CCANNNNNTGG 2 cut(s) 1625, 2936
Vha464I CTTAAG 1 cut(s) 3074
VpaK11BI GGWCC 3 cut(s) 106, 2024, 3109
XapI RAATTY 6 cut(s) 59, 169, 1167, 2065, 2480, 3365
XbaI TCTAGA 3 cut(s) 2291, 2440, 2587
XceI RCATGY 6 cut(s) 498, 619, 1309, 2601, 2643, 3073
XmiI GTMKAC 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 743, 1167
XspI CTAG 9 cut(s) 789, 1190, 1454, 1469, 1707, 2292, 2441, 2588, 2613
ZrmI AGTACT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.