Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Forward (+)

2059475 .. 2061075

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g03680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGTGAGGGGTAGTACTCAGCAGTGTGATGAGAAGAGATTGAAGAAAGGGCCATGGAGTCCTGATGAGGATCACAAGTTGGTAGCATACATTCAAAGATATGGTATTTGGAATTGGAGTCAGATGCCTAAACCTGCTGGTCTGGCAAGATCTGGGAAAAGTTGTAGACTTCGTTGGGTAAATTACTTGAGGCCGGATATTAAGCGTGGAAACTTCAGCAGGGAAGAAGAGGAAACCATAATCAAATTGCAACAGAAAATTGGAAATAGATGGTCTGTTATTGCAGCAAAACTTTCTGGAAGGACAGACAATGAGATCAAGAATTACTGGCACACCCACTTGAAAAAGCGCCTCAACAATGACAAGTCCAACAGAGTGGAGAATACTTCATCTGAAACTGAAACCTTTCTTGTTGATGAGGAAGCTTCAAAAGCATCACTGTTGGAAACTTCAAGAGAAAACTTATCTCCATCAAGTTCTGGTATTGCTGATGAAATTGATCACAAACCCCAGATTACAGAACAGCAAAGTATTTGTGATACATTTGGTGAACTTCAAAGTTTGTGGACACATTCTCAAGTGACATCAACAGCGGTGGAAGATTCCGAGGCTATGTTTGTAGATTCTGCAGGACTTACATTGTCGACTGCTGCTGATCAAGTGTGGCTGCAGCAAGAGCCAATATTTCCATGTGGTTCATATAGTGATGATGCTCATGTTCTTATGAGTGATTATTGGGTCAATTTAGGAGTACAATCTGATGAAACAAATGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

260

Amino Acids

29.44

Weight (kDa)

5.35

Isoelectric Point (pI)

54.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	7.5e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 79	1.5e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 114	9.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 125	3.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AccI	GTMKAC	2 cut(s)	166, 644
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	199
AfaI	GTAC	2 cut(s)	16, 753
AgsI	TTSAA	6 cut(s)	43, 95, 343, 429, 453, 557
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	50, 191
ApeKI	GCWGC	4 cut(s)	284, 650, 667, 670
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	16, 560
BbvI	GCAGC	4 cut(s)	296, 637, 654, 682
BccI	CCATC	2 cut(s)	264, 478
BclI	TGATCA	2 cut(s)	499, 655
BfmI	CTRYAG	2 cut(s)	627, 668
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	142
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	4 cut(s)	285, 651, 668, 671
BlsI	GCNGC	4 cut(s)	286, 652, 669, 672
BmcAI	AGTACT	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	50
BmsI	GCATC	3 cut(s)	114, 443, 700
BpuEI	CTTGAG	2 cut(s)	208, 561
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	53, 606
Bse1I	ACTGG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	53, 606
BseJI	GATNNNNATC	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	4 cut(s)	296, 637, 654, 682
BshFI	GGCC	2 cut(s)	52, 193
BsiSI	CCGG	1 cut(s)	194
BsnI	GGCC	2 cut(s)	52, 193
Bsp143I	GATC	5 cut(s)	70, 149, 315, 499, 655
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	2 cut(s)	52, 193
BspCNI	CTCAG	1 cut(s)	31
BspMAI	CTGCAG	2 cut(s)	631, 672
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	53, 606
BssMI	GATC	5 cut(s)	70, 149, 315, 499, 655
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	441
Bst6I	CTCTTC	2 cut(s)	29, 222
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	5 cut(s)	73, 152, 318, 502, 658
BstMBI	GATC	5 cut(s)	70, 149, 315, 499, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 431, 676
BstSFI	CTRYAG	2 cut(s)	627, 668
BstV1I	GCAGC	4 cut(s)	296, 637, 654, 682
BstX2I	RGATCY	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	52, 193
BtgI	CCRYGG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 437
BveI	ACCTGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	15, 752
CspCI	CAANNNNNGTGG	4 cut(s)	545, 576, 580, 611
CviAII	CATG	3 cut(s)	54, 690, 716
CviJI	RGCY	6 cut(s)	52, 193, 425, 611, 667, 679
CviKI_1	RGCY	6 cut(s)	52, 193, 425, 611, 667, 679
CviQI	GTAC	2 cut(s)	15, 752
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	5 cut(s)	72, 151, 317, 501, 657
DpnII	GATC	5 cut(s)	70, 149, 315, 499, 655
Eam1104I	CTCTTC	2 cut(s)	29, 222
EarI	CTCTTC	2 cut(s)	29, 222
Eco130I	CCWWGG	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	57, 693, 719
FatI	CATG	3 cut(s)	53, 689, 715
FbaI	TGATCA	2 cut(s)	499, 655
FblI	GTMKAC	2 cut(s)	166, 644
Fnu4HI	GCNGC	4 cut(s)	285, 651, 668, 671
Fsp4HI	GCNGC	4 cut(s)	285, 651, 668, 671
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	4 cut(s)	285, 651, 668, 671
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	52, 193
HapII	CCGG	1 cut(s)	194
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	57, 693, 719
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	4 cut(s)	58, 118, 602, 623
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	16, 560
Hpy166II	GTNNAC	4 cut(s)	167, 551, 567, 645
Hpy188I	TCNGA	4 cut(s)	123, 394, 607, 760
Hpy188III	TCNNGA	4 cut(s)	62, 297, 319, 453
Hpy8I	GTNNAC	4 cut(s)	167, 551, 567, 645
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4V	TGCA	4 cut(s)	250, 284, 629, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 431, 676
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	57, 693, 719
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	2 cut(s)	499, 655
Kzo9I	GATC	5 cut(s)	70, 149, 315, 499, 655
Lsp1109I	GCAGC	4 cut(s)	296, 637, 654, 682
LweI	GCATC	3 cut(s)	114, 443, 700
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	5 cut(s)	72, 151, 317, 501, 657
MboI	GATC	5 cut(s)	70, 149, 315, 499, 655
MboII	GAAGA	5 cut(s)	46, 55, 236, 239, 611
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	7 cut(s)	112, 181, 245, 258, 322, 495, 742
MlyI	GAGTC	2 cut(s)	67, 127
MmeI	TCCRAC	2 cut(s)	393, 423
MnlI	CCTC	6 cut(s)	61, 183, 223, 362, 412, 601
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	143, 431, 676
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	5 cut(s)	70, 149, 315, 499, 655
NlaIII	CATG	3 cut(s)	57, 693, 719
NmuCI	GTSAC	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	2 cut(s)	602, 623
PkrI	GCNGC	4 cut(s)	286, 652, 669, 672
PleI	GAGTC	2 cut(s)	66, 126
PpsI	GAGTC	2 cut(s)	66, 126
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	2 cut(s)	631, 672
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	16, 753
RsaNI	GTAC	2 cut(s)	15, 752
SalI	GTCGAC	1 cut(s)	643
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	285, 651, 668, 671
Sau3AI	GATC	5 cut(s)	70, 149, 315, 499, 655
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	67, 127
SetI	ASST	3 cut(s)	136, 407, 427
SfaNI	GCATC	3 cut(s)	114, 443, 700
SfcI	CTRYAG	2 cut(s)	627, 668
SmlI	CTYRAG	2 cut(s)	187, 576
SmoI	CTYRAG	2 cut(s)	187, 576
Sse9I	AATT	7 cut(s)	112, 181, 245, 258, 322, 495, 742
SsiI	CCGC	1 cut(s)	593
SspI	AATATT	1 cut(s)	684
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	441
TaqI	TCGA	1 cut(s)	644
TasI	AATT	7 cut(s)	112, 181, 245, 258, 322, 495, 742
TatI	WGTACW	2 cut(s)	14, 751
TfiI	GAWTC	2 cut(s)	602, 623
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	29, 444
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	4 cut(s)	284, 650, 667, 670
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	4 cut(s)	378, 507, 687, 777
TspRI	CASTG	2 cut(s)	29, 444
XmiI	GTMKAC	2 cut(s)	166, 644
XmnI	GAANNNNTTC	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.