Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Forward (+)

3488607 .. 3489703

Gene Structure 1097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG043900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTGAGGAGTAGTACTCAGCAGTGTGAAGAGAAGAGACCTTTGAAGAAAGGGCCATGGAGTCCTGATGAGGATCACAAGTTGATAGCTTACATTCAAAGATATGGTATTTGGAATTGGAGTCAGATGCCTAAACCTGCCGCTCCAAAGGCATCACAGTTGGAAACTTCTAGAGAAAACTTCTCTCCATCAAGTTCTGGTATTGCTGATGAAGTTTATCACAAACCCCAGATTCCAGAACAGCAGAGCATCTGTGAAACATTTGGTGAACTCCAAAGTTTGTGGACAGATTCTCAAGTGACATCAACAGCGGTGGAAAATTCTGAGGCTATGTTTACAGATTCTGCTGGATTTACATTATCAAGTGCTGCTGATCAAGTGTGGCTGCAGCAAGAGCCCATATTTCCATGTGGTTCCTATAGTGATGATGCTCATGTTCCCATGAGTGACCATTGGGTCAATTTATCAGTACAATCTGATGAAACAAATGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

165

Amino Acids

18.5

Weight (kDa)

4.56

Isoelectric Point (pI)

60.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 45	3.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	2 cut(s)	141, 311
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	2 cut(s)	16, 471
AgsI	TTSAA	2 cut(s)	46, 98
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	3 cut(s)	368, 385, 388
ApoI	RAATTY	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	16, 278
BanII	GRGCYC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	355, 372, 400
BccI	CCATC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	2 cut(s)	386, 418
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	141, 369, 386, 389
BlsI	GCNGC	4 cut(s)	142, 370, 387, 390
BmcAI	AGTACT	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	415
BmsI	GCATC	4 cut(s)	117, 161, 258, 418
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	32, 315
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	355, 372, 400
BshFI	GGCC	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	73, 373
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	141, 311
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	31, 316
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	73, 373
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	2 cut(s)	24, 29
BstDEI	CTNAG	2 cut(s)	18, 324
BstDSI	CCRYGG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	76, 376
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	73, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 394
BstSFI	CTRYAG	2 cut(s)	386, 418
BstV1I	GCAGC	3 cut(s)	355, 372, 400
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	15, 470
CspCI	CAANNNNNGTGG	4 cut(s)	263, 294, 298, 329
CviAII	CATG	4 cut(s)	57, 408, 434, 442
CviJI	RGCY	5 cut(s)	55, 89, 329, 385, 397
CviKI_1	RGCY	5 cut(s)	55, 89, 329, 385, 397
CviQI	GTAC	2 cut(s)	15, 470
DdeI	CTNAG	2 cut(s)	18, 324
DpnI	GATC	2 cut(s)	75, 375
DpnII	GATC	2 cut(s)	73, 373
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
Eam1104I	CTCTTC	2 cut(s)	24, 29
EarI	CTCTTC	2 cut(s)	24, 29
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	4 cut(s)	60, 411, 437, 445
FaiI	YATR	8 cut(s)	58, 105, 332, 401, 409, 420, 435, 443
FatI	CATG	4 cut(s)	56, 407, 433, 441
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	4 cut(s)	141, 369, 386, 389
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	4 cut(s)	141, 369, 386, 389
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	4 cut(s)	141, 369, 386, 389
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	60, 411, 437, 445
HinfI	GANTC	5 cut(s)	61, 121, 232, 290, 341
HphI	GGTGA	2 cut(s)	16, 278
Hpy166II	GTNNAC	3 cut(s)	269, 285, 336
Hpy188I	TCNGA	3 cut(s)	126, 325, 478
Hpy188III	TCNNGA	3 cut(s)	65, 171, 236
Hpy8I	GTNNAC	3 cut(s)	269, 285, 336
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 394
HpyF3I	CTNAG	2 cut(s)	18, 324
Hsp92II	CATG	4 cut(s)	60, 411, 437, 445
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	73, 373
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	78, 150, 183, 242, 249, 333
Lsp1109I	GCAGC	3 cut(s)	355, 372, 400
LweI	GCATC	4 cut(s)	117, 161, 258, 418
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	298, 446
MalI	GATC	2 cut(s)	75, 375
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	2 cut(s)	73, 373
MboII	GAAGA	3 cut(s)	41, 46, 58
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	3 cut(s)	115, 319, 460
MlyI	GAGTC	2 cut(s)	70, 130
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	64, 319
MspA1I	CMGCKG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	149, 394
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	73, 373
NlaIII	CATG	4 cut(s)	60, 411, 437, 445
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	298, 446
PfeI	GAWTC	3 cut(s)	232, 290, 341
PkrI	GCNGC	4 cut(s)	142, 370, 387, 390
PleI	GAGTC	2 cut(s)	69, 129
PpsI	GAGTC	2 cut(s)	69, 129
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	16, 471
RsaNI	GTAC	2 cut(s)	15, 470
SatI	GCNGC	4 cut(s)	141, 369, 386, 389
Sau3AI	GATC	2 cut(s)	73, 373
Sau96I	GGNCC	1 cut(s)	53
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	70, 130
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	3 cut(s)	43, 91, 139
SfaNI	GCATC	4 cut(s)	117, 161, 258, 418
SfcI	CTRYAG	2 cut(s)	386, 418
SmlI	CTYRAG	1 cut(s)	294
SmoI	CTYRAG	1 cut(s)	294
Sse9I	AATT	3 cut(s)	115, 319, 460
SsiI	CCGC	2 cut(s)	141, 311
SspMI	CTAG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	159
TasI	AATT	3 cut(s)	115, 319, 460
TatI	WGTACW	2 cut(s)	14, 469
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	232, 290, 341
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	2 cut(s)	298, 446
TseI	GCWGC	3 cut(s)	368, 385, 388
Tsp45I	GTSAC	2 cut(s)	298, 446
TspDTI	ATGAA	2 cut(s)	225, 495
TspRI	CASTG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	170
XspI	CTAG	1 cut(s)	171
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.