Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Forward (+)

3629409 .. 3630522

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG043700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTGAGGAGTAGTACTCAGCAGTGTGAAGAGAAGAGACCTTTGAAGAAAGGGCCATGGAGTCCTGATGAGGATCACAAGTTGATAGCTTACATTCAAAGATATGGTATTTGGAATTGGAGTCATATGCCTAAACCTGCCGCTCCAAAGGCATCACAGTTGGAAACTTCTAGAGAAAACTTCTCTTCATCAAGTTCTGGTATTGCTGATGAAGTTTATCACAAACCCCAGATTCCAGAACAGCAGAGCATCTGTGAAACATTTGGTGAACTCCAAAGTTTGTGGACAGATTCTCTAGTGACATCAACAGCGGTGAAAAATTCTGAGGCTATGTTTACAGATTCTGCTGGATTTACATTATCAAGTGCTGCTGATCAAGTGTGGCTGCAGCAAGAGCCCATATTTCCATGTGGTTCCTATAGCGATGATGCTCATGTTCCCATGAGTGACTATTGGGTCAATTTATCAGTACAATCTGATGAAACAAATGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

165

Amino Acids

18.51

Weight (kDa)

4.7

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 45	3.5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	2 cut(s)	141, 311
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	2 cut(s)	16, 471
AgsI	TTSAA	2 cut(s)	46, 98
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	81
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	3 cut(s)	368, 385, 388
ApoI	RAATTY	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	3 cut(s)	16, 278, 325
BanII	GRGCYC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	355, 372, 400
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	2 cut(s)	171, 296
BfmI	CTRYAG	2 cut(s)	386, 418
BfuAI	ACCTGC	1 cut(s)	145
BisI	GCNGC	4 cut(s)	141, 369, 386, 389
BlsI	GCNGC	4 cut(s)	142, 370, 387, 390
BmcAI	AGTACT	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	415
BmsI	GCATC	3 cut(s)	161, 258, 418
BplI	GAGNNNNNCTC	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	32, 315
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	355, 372, 400
BshFI	GGCC	1 cut(s)	55
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	73, 373
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	141, 311
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	31, 316
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	390
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	81
BspTNI	GGTCTC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	2 cut(s)	73, 373
BssT1I	CCWWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	159
Bst6I	CTCTTC	3 cut(s)	24, 29, 190
BstDEI	CTNAG	2 cut(s)	18, 324
BstDSI	CCRYGG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	76, 376
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	73, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 394
BstSFI	CTRYAG	2 cut(s)	386, 418
BstV1I	GCAGC	3 cut(s)	355, 372, 400
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	56
BtgZI	GCGATG	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	145
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	15, 470
CspCI	CAANNNNNGTGG	2 cut(s)	263, 298
CviAII	CATG	4 cut(s)	57, 408, 434, 442
CviJI	RGCY	5 cut(s)	55, 89, 329, 385, 397
CviKI_1	RGCY	5 cut(s)	55, 89, 329, 385, 397
CviQI	GTAC	2 cut(s)	15, 470
DdeI	CTNAG	2 cut(s)	18, 324
DpnI	GATC	2 cut(s)	75, 375
DpnII	GATC	2 cut(s)	73, 373
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
Eam1104I	CTCTTC	3 cut(s)	24, 29, 190
EarI	CTCTTC	3 cut(s)	24, 29, 190
Eco130I	CCWWGG	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	4 cut(s)	60, 411, 437, 445
FatI	CATG	4 cut(s)	56, 407, 433, 441
FauNDI	CATATG	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	4 cut(s)	141, 369, 386, 389
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	4 cut(s)	141, 369, 386, 389
FspBI	CTAG	2 cut(s)	171, 296
GluI	GCNGC	4 cut(s)	141, 369, 386, 389
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	60, 411, 437, 445
HinfI	GANTC	5 cut(s)	61, 121, 232, 290, 341
HphI	GGTGA	3 cut(s)	16, 278, 325
Hpy166II	GTNNAC	3 cut(s)	269, 285, 336
Hpy188I	TCNGA	2 cut(s)	325, 478
Hpy188III	TCNNGA	3 cut(s)	65, 171, 236
Hpy8I	GTNNAC	3 cut(s)	269, 285, 336
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 394
HpyF3I	CTNAG	2 cut(s)	18, 324
Hsp92II	CATG	4 cut(s)	60, 411, 437, 445
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	73, 373
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	78, 150, 183, 242, 249, 333
Lsp1109I	GCAGC	3 cut(s)	355, 372, 400
LweI	GCATC	3 cut(s)	161, 258, 418
MaeI	CTAG	2 cut(s)	171, 296
MaeIII	GTNAC	2 cut(s)	298, 446
MalI	GATC	2 cut(s)	75, 375
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	2 cut(s)	73, 373
MboII	GAAGA	4 cut(s)	41, 46, 58, 177
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	3 cut(s)	115, 319, 460
MlyI	GAGTC	2 cut(s)	70, 130
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	64, 319
MspA1I	CMGCKG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	149, 394
NcoI	CCATGG	1 cut(s)	56
NdeI	CATATG	1 cut(s)	126
NdeII	GATC	2 cut(s)	73, 373
NlaIII	CATG	4 cut(s)	60, 411, 437, 445
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	298, 446
PfeI	GAWTC	3 cut(s)	232, 290, 341
PkrI	GCNGC	4 cut(s)	142, 370, 387, 390
PleI	GAGTC	2 cut(s)	69, 129
PpsI	GAGTC	2 cut(s)	69, 129
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	16, 471
RsaNI	GTAC	2 cut(s)	15, 470
SatI	GCNGC	4 cut(s)	141, 369, 386, 389
Sau3AI	GATC	2 cut(s)	73, 373
Sau96I	GGNCC	1 cut(s)	53
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	70, 130
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	3 cut(s)	43, 91, 139
SfaNI	GCATC	3 cut(s)	161, 258, 418
SfcI	CTRYAG	2 cut(s)	386, 418
Sse9I	AATT	3 cut(s)	115, 319, 460
SsiI	CCGC	2 cut(s)	141, 311
SspMI	CTAG	2 cut(s)	171, 296
StyI	CCWWGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	159
TasI	AATT	3 cut(s)	115, 319, 460
TatI	WGTACW	2 cut(s)	14, 469
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	3 cut(s)	232, 290, 341
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	2 cut(s)	298, 446
TseI	GCWGC	3 cut(s)	368, 385, 388
Tsp45I	GTSAC	2 cut(s)	298, 446
TspDTI	ATGAA	3 cut(s)	177, 225, 495
TspRI	CASTG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	170
XspI	CTAG	2 cut(s)	171, 296
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.