Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Reverse (-)

30368338 .. 30369413

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGAAAAGGACTCAGCGGTGTGAGAAGACGGTAGCTAGGAAGAAAGGTCCATGGAGTCCTGAAGAGGATCAAAAGTTGGTAGTTTACATTCAGAGATATGGAATTTGGAATTGGAGTCAGATGCCTAAACCAGCTGGTCTGGCTAGATCCGGGAAGAGTTGTAGACTTCGTTGGGTGAATTACTTAAGGCCGGATATTAAGCGTGGGAACTTCAGCAAAGACGAAGAGGAAACCATACTCGAGTTGCATCAAGCAATAGGAAACCGATGGTCTGCTATTGCAGCAAGACTTCCTGGAAGAACAGATAATGAGATTAAGAATCACTGGAACACCCACCTGAAGAAACGCTTCAAGGCGGCAATTGAATCAGTACACGAAGAAGCAAAAGGATTCGGAGACAAAGAAGCCAGCAAGAACAAGTTATCTGAAACTGAACAGCTGTTTCTTGTTGATGAAGCTACAAGGGCATCATCATCAAAGATGGAGACAACTTCTTCAACTTCAGCTTCATCAAGATTATTCTGTCCCGTTTGGGAATTCGATGATCGAAAAGGCCAGATTGCAGAGCAAAGCATTTGTGCATCTGGTGTCACATTTGGTGACCTTCAAAGTTTGGATTCTCAGGCGTGGCAGCAAGAGCCTATATTTCCATGTGATTCCTACATTAATCATGCCACCAGTGATGACTGGGTCAGTTTAATCAATAAAACAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.24

Weight (kDa)

8.74

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	2 cut(s)	19, 359
AclWI	GGATC	2 cut(s)	78, 144
AcsI	RAATTY	2 cut(s)	105, 539
AcuI	CTGAAG	4 cut(s)	84, 199, 362, 489
AfaI	GTAC	1 cut(s)	375
AflII	CTTAAG	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	355, 368, 501, 611
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	5 cut(s)	38, 137, 442, 461, 509
AluI	AGCT	5 cut(s)	38, 137, 442, 461, 509
Alw26I	GTCTC	2 cut(s)	393, 482
AlwI	GGATC	2 cut(s)	78, 144
Ama87I	CYCGRG	1 cut(s)	242
AoxI	GGCC	2 cut(s)	191, 556
ApeKI	GCWGC	2 cut(s)	284, 634
ApoI	RAATTY	2 cut(s)	105, 539
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	190, 614
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	296, 646
BccI	CCATC	2 cut(s)	264, 478
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	2 cut(s)	393, 482
BfaI	CTAG	2 cut(s)	39, 147
BfrI	CTTAAG	1 cut(s)	187
BisI	GCNGC	3 cut(s)	285, 360, 635
BlsI	GCNGC	3 cut(s)	286, 361, 636
Bme1390I	CCNGG	2 cut(s)	154, 297
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	2 cut(s)	154, 297
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	4 cut(s)	114, 259, 479, 593
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	332, 681, 695
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	29, 638
BseNI	ACTGG	3 cut(s)	332, 681, 695
BseXI	GCAGC	2 cut(s)	296, 646
BshFI	GGCC	2 cut(s)	193, 558
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	153, 194
BslFI	GGGAC	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	393, 482
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	193, 558
BsoBI	CYCGRG	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	70, 149, 547
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	2 cut(s)	19, 359
BspANI	GGCC	2 cut(s)	193, 558
BspCNI	CTCAG	2 cut(s)	28, 637
BspPI	GGATC	2 cut(s)	78, 144
BspTI	CTTAAG	1 cut(s)	187
BsrI	ACTGG	3 cut(s)	332, 681, 695
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	3 cut(s)	70, 149, 547
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	3 cut(s)	60, 152, 222
BstAFI	CTTAAG	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	2 cut(s)	15, 624
BstDSI	CCRYGG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	602
BstKTI	GATC	3 cut(s)	73, 152, 550
BstMAI	GTCTC	2 cut(s)	393, 482
BstMBI	GATC	3 cut(s)	70, 149, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 284, 467, 640
BstNI	CCWGG	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	152, 295
BstV1I	GCAGC	2 cut(s)	296, 646
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	193, 558
BtgI	CCRYGG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	325, 688
Cac8I	GCNNGC	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	3 cut(s)	54, 654, 674
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	2 cut(s)	15, 624
DpnI	GATC	3 cut(s)	72, 151, 549
DpnII	GATC	3 cut(s)	70, 149, 547
Eam1104I	CTCTTC	3 cut(s)	60, 152, 222
EarI	CTCTTC	3 cut(s)	60, 152, 222
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	4 cut(s)	84, 199, 362, 489
Eco88I	CYCGRG	1 cut(s)	242
Eco91I	GGTNACC	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	3 cut(s)	57, 657, 677
FaiI	YATR	6 cut(s)	55, 102, 239, 647, 655, 675
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	3 cut(s)	53, 653, 673
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	285, 360, 635
Fsp4HI	GCNGC	3 cut(s)	285, 360, 635
FspBI	CTAG	2 cut(s)	39, 147
GluI	GCNGC	3 cut(s)	285, 360, 635
HaeIII	GGCC	2 cut(s)	193, 558
HapII	CCGG	2 cut(s)	153, 194
Hin1II	CATG	3 cut(s)	57, 657, 677
HinfI	GANTC	8 cut(s)	13, 58, 118, 322, 368, 393, 620, 659
HpaII	CCGG	2 cut(s)	153, 194
HphI	GGTGA	2 cut(s)	190, 614
Hpy166II	GTNNAC	3 cut(s)	88, 167, 376
Hpy188I	TCNGA	4 cut(s)	96, 123, 398, 430
Hpy188III	TCNNGA	2 cut(s)	62, 516
Hpy8I	GTNNAC	3 cut(s)	88, 167, 376
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	250, 284, 566, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 284, 467, 640
HpyF3I	CTNAG	2 cut(s)	15, 624
Hsp92II	CATG	3 cut(s)	57, 657, 677
Kzo9I	GATC	3 cut(s)	70, 149, 547
Lsp1109I	GCAGC	2 cut(s)	296, 646
LweI	GCATC	4 cut(s)	114, 259, 479, 593
MaeI	CTAG	2 cut(s)	39, 147
MaeIII	GTNAC	2 cut(s)	592, 602
MalI	GATC	3 cut(s)	72, 151, 549
MboI	GATC	3 cut(s)	70, 149, 547
MboII	GAAGA	9 cut(s)	40, 55, 77, 169, 239, 312, 355, 392, 489
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	149
MluCI	AATT	5 cut(s)	105, 112, 181, 363, 539
MlyI	GAGTC	3 cut(s)	7, 67, 127
MnlI	CCTC	2 cut(s)	61, 223
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	5 cut(s)	188, 201, 318, 669, 701
MspA1I	CMGCKG	3 cut(s)	19, 137, 442
MspCI	CTTAAG	1 cut(s)	187
MspI	CCGG	2 cut(s)	153, 194
MspR9I	CCNGG	2 cut(s)	154, 297
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	143, 284, 467, 640
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	3 cut(s)	70, 149, 547
NlaIII	CATG	3 cut(s)	57, 657, 677
NmuCI	GTSAC	2 cut(s)	592, 602
PaeR7I	CTCGAG	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	5 cut(s)	322, 368, 393, 620, 659
PflFI	GACNNNGTC	1 cut(s)	692
PfoI	TCCNGGA	2 cut(s)	152, 295
PkrI	GCNGC	3 cut(s)	286, 361, 636
PleI	GAGTC	3 cut(s)	7, 66, 126
PpsI	GAGTC	3 cut(s)	7, 66, 126
PshBI	ATTAAT	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	50
PspXI	VCTCGAGB	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	692
PvuII	CAGCTG	2 cut(s)	137, 442
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
SaqAI	TTAA	5 cut(s)	188, 201, 318, 669, 701
SatI	GCNGC	3 cut(s)	285, 360, 635
Sau3AI	GATC	3 cut(s)	70, 149, 547
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	3 cut(s)	7, 67, 127
ScrFI	CCNGG	2 cut(s)	154, 297
SetI	ASST	8 cut(s)	40, 52, 139, 342, 444, 463, 511, 609
SfaNI	GCATC	4 cut(s)	114, 259, 479, 593
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	187, 242
SmoI	CTYRAG	2 cut(s)	187, 242
Sse9I	AATT	5 cut(s)	105, 112, 181, 363, 539
SsiI	CCGC	2 cut(s)	19, 359
SspMI	CTAG	2 cut(s)	39, 147
StyD4I	CCNGG	2 cut(s)	152, 295
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	243, 543, 550
TasI	AATT	5 cut(s)	105, 112, 181, 363, 539
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	5 cut(s)	322, 368, 393, 620, 659
Tru1I	TTAA	5 cut(s)	188, 201, 318, 669, 701
Tru9I	TTAA	5 cut(s)	188, 201, 318, 669, 701
TscAI	CASTG	2 cut(s)	332, 688
TseFI	GTSAC	2 cut(s)	592, 602
TseI	GCWGC	2 cut(s)	284, 634
Tsp45I	GTSAC	2 cut(s)	592, 602
TspDTI	ATGAA	2 cut(s)	471, 501
TspRI	CASTG	2 cut(s)	332, 688
Tth111I	GACNNNGTC	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	2 cut(s)	105, 539
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	2 cut(s)	39, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.