Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Forward (+)

1578745 .. 1580157

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G034000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGAAGAGTCAGCAGTGTGAGAAGGAAGCTGTGAAGAAAGGGCCATGGAGCCCTGATGAGGATCACAAGTTGATAGCTTACATTCAGAGATATGGTATTTGGAATTGGAGTCAGATGCCAAAACCTGCTGGTCTGGCAAGGTCTGGGAAAAGTTGTAGGCTTCGTTGGGTGAATTACTTGAGGCCGGATATTAAGAGCGGAAGCTTCAACAAGGAGGAAGAGGAGGCCATACTCAAGTTGCATGAAACAATGGGAAATAGATGGTCTGCTATTGCTGCAACACTTCCTGGAAGAACAGACAATGAAATTAAAAATTACTGGCACACCCACTTGAAAAAACGGTTCAAGGCGACTGAACCAGTACAAGAAGCACAAGTGTTCAATGACAAGAAGAAGTTTTCTGAAACTGAACTCTTTCTTCTGGGTGAAGCTCCAAAGGCATCAAAGTTGGAGACAATTTCAACTTCATCAAGCTCTGGTCCTGTTCATGGTGATCATAATAAAGACCAGATTGCAGAGCAGAACATTTGTGCATCTGAAACATTTGGTGAACAACAAAGTTTGTGGGCAGAGTCACACATTGTGCAGGATTCTGAGGCAATATTTAAAGATCCTGGATTCACATTATCCAATCCTCCAACTCAGAGTTGGCTGCAAGAGCCCATATTCCCTTCTGGTTCATCATACAATGATGCCTCCAATGATTATTGGGTTAATTTATCAATGCAGGCTGAAATAGATGGAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

251

Amino Acids

28.35

Weight (kDa)

5.85

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	72, 608
AdeI	CACNNNGTG	1 cut(s)	586
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	61, 491
AgsI	TTSAA	5 cut(s)	211, 337, 349, 385, 465
AjnI	CCWGG	2 cut(s)	289, 616
AluBI	AGCT	5 cut(s)	32, 80, 207, 434, 477
AluI	AGCT	5 cut(s)	32, 80, 207, 434, 477
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	72, 608
AoxI	GGCC	3 cut(s)	44, 185, 228
ApeKI	GCWGC	2 cut(s)	278, 655
Asp700I	GAANNNNTTC	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	44, 482
AsuHPI	GGTGA	5 cut(s)	16, 184, 440, 506, 563
AvaII	GGWCC	1 cut(s)	482
BanII	GRGCYC	2 cut(s)	56, 666
BbvI	GCAGC	2 cut(s)	265, 642
BccI	CCATC	2 cut(s)	258, 737
BciT130I	CCWGG	2 cut(s)	291, 618
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	2 cut(s)	279, 656
BlsI	GCNGC	2 cut(s)	280, 657
Bme1390I	CCNGG	2 cut(s)	291, 618
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	44, 482
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	291, 618
BmsI	GCATC	4 cut(s)	108, 452, 545, 685
BpuEI	CTTGAG	2 cut(s)	202, 221
BsaBI	GATNNNNATC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 491
Bse1I	ACTGG	2 cut(s)	326, 362
Bse8I	GATNNNNATC	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	291, 618
BseDI	CCNNGG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	2 cut(s)	61, 491
BseMII	CTCAG	2 cut(s)	588, 659
BseNI	ACTGG	2 cut(s)	326, 362
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	265, 642
BsgI	GTGCAG	1 cut(s)	608
BshFI	GGCC	3 cut(s)	46, 187, 230
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	61, 491
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	46, 187, 230
Bsp1286I	GDGCHC	2 cut(s)	56, 666
Bsp143I	GATC	3 cut(s)	64, 496, 613
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	46, 187, 230
BspCNI	CTCAG	2 cut(s)	589, 658
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	2 cut(s)	72, 608
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	326, 362
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	64, 496, 613
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	2 cut(s)	291, 618
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	2 cut(s)	2, 216
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	2 cut(s)	597, 645
BstDSI	CCRYGG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	67, 499, 616
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	3 cut(s)	64, 496, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 278, 440, 661
BstNI	CCWGG	2 cut(s)	291, 618
BstSCI	CCNGG	2 cut(s)	289, 616
BstV1I	GCAGC	2 cut(s)	265, 642
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	46, 187, 230
BtgI	CCRYGG	1 cut(s)	47
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	732
Cfr13I	GGNCC	2 cut(s)	44, 482
Csp6I	GTAC	1 cut(s)	365
CspCI	CAANNNNNGTGG	2 cut(s)	548, 583
CviAII	CATG	3 cut(s)	48, 245, 491
CviQI	GTAC	1 cut(s)	365
DdeI	CTNAG	2 cut(s)	597, 645
DpnI	GATC	3 cut(s)	66, 498, 615
DpnII	GATC	3 cut(s)	64, 496, 613
DraI	TTTAAA	1 cut(s)	610
DraIII	CACNNNGTG	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	2, 216
EarI	CTCTTC	2 cut(s)	2, 216
Eco130I	CCWWGG	1 cut(s)	47
Eco24I	GRGCYC	2 cut(s)	56, 666
Eco47I	GGWCC	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	289, 616
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	2 cut(s)	56, 666
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	3 cut(s)	51, 248, 494
FaiI	YATR	8 cut(s)	49, 96, 233, 246, 492, 501, 668, 688
FatI	CATG	3 cut(s)	47, 244, 490
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	279, 656
FriOI	GRGCYC	2 cut(s)	56, 666
Fsp4HI	GCNGC	2 cut(s)	279, 656
GluI	GCNGC	2 cut(s)	279, 656
HaeIII	GGCC	3 cut(s)	46, 187, 230
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	3 cut(s)	51, 248, 494
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	6 cut(s)	10, 112, 575, 593, 621, 747
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	5 cut(s)	16, 184, 440, 506, 563
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	7 cut(s)	90, 117, 406, 541, 598, 648, 752
Hpy8I	GTNNAC	1 cut(s)	554
HpyAV	CCTTC	2 cut(s)	19, 684
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	7 cut(s)	244, 281, 518, 536, 589, 658, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 278, 440, 661
HpyF3I	CTNAG	2 cut(s)	597, 645
Hsp92II	CATG	3 cut(s)	51, 248, 494
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	64, 496, 613
LmnI	GCTCC	2 cut(s)	51, 439
Lsp1109I	GCAGC	2 cut(s)	265, 642
LweI	GCATC	4 cut(s)	108, 452, 545, 685
MaeIII	GTNAC	1 cut(s)	576
MalI	GATC	3 cut(s)	66, 498, 615
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	3 cut(s)	64, 496, 613
MboII	GAAGA	6 cut(s)	19, 49, 233, 306, 406, 413
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	2 cut(s)	56, 666
MluCI	AATT	6 cut(s)	106, 175, 309, 316, 459, 718
MlyI	GAGTC	3 cut(s)	19, 121, 584
MmeI	TCCRAC	2 cut(s)	432, 665
MnlI	CCTC	8 cut(s)	55, 177, 211, 217, 220, 592, 648, 709
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	4 cut(s)	195, 312, 609, 717
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	291, 618
MvaI	CCWGG	2 cut(s)	291, 618
MwoI	GCNNNNNNNGC	4 cut(s)	137, 278, 440, 661
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	3 cut(s)	64, 496, 613
NlaIII	CATG	3 cut(s)	51, 248, 494
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	576
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	593, 621, 747
PfoI	TCCNGGA	2 cut(s)	289, 616
PkrI	GCNGC	2 cut(s)	280, 657
PleI	GAGTC	3 cut(s)	18, 120, 583
PpsI	GAGTC	3 cut(s)	18, 120, 583
Psp6I	CCWGG	2 cut(s)	289, 616
PspGI	CCWGG	2 cut(s)	289, 616
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	44, 482
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	4 cut(s)	195, 312, 609, 717
SatI	GCNGC	2 cut(s)	279, 656
Sau3AI	GATC	3 cut(s)	64, 496, 613
Sau96I	GGNCC	2 cut(s)	44, 482
SchI	GAGTC	3 cut(s)	19, 121, 584
ScrFI	CCNGG	2 cut(s)	291, 618
SduI	GDGCHC	2 cut(s)	56, 666
SetI	ASST	7 cut(s)	34, 82, 130, 146, 209, 436, 479
SfaNI	GCATC	4 cut(s)	108, 452, 545, 685
SinI	GGWCC	1 cut(s)	482
SmlI	CTYRAG	2 cut(s)	181, 236
SmoI	CTYRAG	2 cut(s)	181, 236
Sse9I	AATT	6 cut(s)	106, 175, 309, 316, 459, 718
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	289, 616
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	345
TasI	AATT	6 cut(s)	106, 175, 309, 316, 459, 718
TatI	WGTACW	1 cut(s)	364
TfiI	GAWTC	3 cut(s)	593, 621, 747
Tru1I	TTAA	4 cut(s)	195, 312, 609, 717
Tru9I	TTAA	4 cut(s)	195, 312, 609, 717
TscAI	CASTG	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	2 cut(s)	278, 655
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	5 cut(s)	261, 321, 459, 479, 672
TspRI	CASTG	1 cut(s)	23
VpaK11BI	GGWCC	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	648
XmnI	GAANNNNTTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.