Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8433021.1

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 861

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8433021.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 544 bp

atggtgaggagtagtactcagcagtgtgaagagaagagacctttgaagaaagggccatggagtcctgatgaggatcataagttgatagcttacattcaaagatatggtatttggaattggagtcagatgcctaaacctgccggtctggcaaggtctgggaaaagttgtagacttcgttggatgaattacttgaggccggatattaagcgcggaaacttcagcaaggaagaagaggagaccataatcaagttgcaacagaatatgggaaacagatggtctgtaattgcagcaaaacttcctggaagaactgacaatgaaatcaagaattactggcacacccacttgaaaaggcacctcaacaatgacaaagccaaaagcggcgagaatacttcatctgaaactgaaacctttcttcttgataaggaagctccaaaggcatctgaaacttcaagagaaaacttctcttcatcaagttctggtattgctgatgaagtttatcacaaaccccagattccagaacagcagagcatctgtgaaacatttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

181

Amino Acids

21.0

Weight (kDa)

9.08

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	169
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	210, 378
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	16
AgsI	TTSAA	4 cut(s)	46, 98, 346, 450
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	2 cut(s)	89, 428
AluI	AGCT	2 cut(s)	89, 428
Alw26I	GTCTC	2 cut(s)	31, 230
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	53, 194
ApeKI	GCWGC	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	31, 230
BfuAI	ACCTGC	1 cut(s)	145
BglI	GCCNNNNNGGC	1 cut(s)	146
BisI	GCNGC	2 cut(s)	288, 379
BlsI	GCNGC	2 cut(s)	289, 380
BmcAI	AGTACT	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	117, 446, 537
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	72
BsaI	GGTCTC	2 cut(s)	31, 230
BsaJI	CCNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	335
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	186
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	22, 248
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	55, 196
BshNI	GGYRCC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	141, 197
BsmAI	GTCTC	2 cut(s)	31, 230
BsnI	GGCC	2 cut(s)	55, 196
Bso31I	GGTCTC	2 cut(s)	31, 230
Bsp143I	GATC	1 cut(s)	73
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	210, 378
BspANI	GGCC	2 cut(s)	55, 196
BspCNI	CTCAG	1 cut(s)	31
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	353
BspMI	ACCTGC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	351
BspTNI	GGTCTC	2 cut(s)	31, 230
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	300
Bst6I	CTCTTC	4 cut(s)	24, 29, 225, 469
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	31, 230
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 434
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	298
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	55, 196
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
BveI	ACCTGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	210
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	1 cut(s)	57
CviJI	RGCY	5 cut(s)	55, 89, 196, 371, 428
CviKI_1	RGCY	5 cut(s)	55, 89, 196, 371, 428
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	4 cut(s)	24, 29, 225, 469
EarI	CTCTTC	4 cut(s)	24, 29, 225, 469
Eco130I	CCWWGG	1 cut(s)	56
Eco31I	GGTCTC	2 cut(s)	31, 230
Eco57I	CTGAAG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	56
FaeI	CATG	1 cut(s)	60
FaiI	YATR	5 cut(s)	58, 78, 105, 242, 263
FatI	CATG	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	288, 379
FokI	GGATG	1 cut(s)	193
Fsp4HI	GCNGC	2 cut(s)	288, 379
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	2 cut(s)	288, 379
HaeIII	GGCC	2 cut(s)	55, 196
HapII	CCGG	2 cut(s)	141, 197
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	61, 121, 511
HpaII	CCGG	2 cut(s)	141, 197
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	3 cut(s)	126, 397, 442
Hpy188III	TCNNGA	5 cut(s)	65, 322, 416, 450, 515
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	253, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 434
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	60
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	1 cut(s)	299
LweI	GCATC	3 cut(s)	117, 446, 537
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	8 cut(s)	41, 46, 58, 239, 242, 315, 404, 456
MluCI	AATT	4 cut(s)	115, 184, 282, 325
MlyI	GAGTC	2 cut(s)	70, 130
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	4 cut(s)	64, 186, 226, 365
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	204
MspI	CCGG	2 cut(s)	141, 197
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	146, 434
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	353
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	511
PfoI	TCCNGGA	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	289, 380
PleI	GAGTC	2 cut(s)	69, 129
PpsI	GAGTC	2 cut(s)	69, 129
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	53
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	288, 379
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	53
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	2 cut(s)	70, 130
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	7 cut(s)	43, 91, 139, 155, 357, 410, 430
SfaNI	GCATC	3 cut(s)	117, 446, 537
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	4 cut(s)	115, 184, 282, 325
SsiI	CCGC	2 cut(s)	210, 378
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	1 cut(s)	56
TasI	AATT	4 cut(s)	115, 184, 282, 325
TatI	WGTACW	1 cut(s)	14
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	1 cut(s)	511
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	29
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	5 cut(s)	197, 330, 381, 456, 504
TspRI	CASTG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	169
XmnI	GAANNNNTTC	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.