Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Forward (+)

4078256 .. 4079345

Gene Structure 1090 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031321

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAATTATTTGAGGCCGGATATTAAGCGCGGAAACTTCAGCAAGGAAGAAGAGGAGACCATAATCAAGTTGCAACAGAATATGGGAAACAGATGGTCTGTAATTGCAGCAAAACTTCCTGGAAGAACTGACAATGAAATCAAGAATTACTGGCACACCCACTTGAAAAGGCGCCTCAACAATGACAAAGCCAAAAGCGTCGAGAACACCTCATCTGAAACTGAAACCTTTCTTCTTGAGAAGGAAGCTCCAAAGGCATCACAGTTGGAAACTTCTAGAGAAAACTTCTCTTCATCAAGTTCTGGTATTGCTGATGAAGTTTATCACAAACCCCAGATTCCAGAGCAGCAGAGCATCTGTGAAACATTTGGTGAACTCCAAAGTTTGTGGCCAGATTCTCAAGTGACATCAACAGCGGTGGAAAATTCTGAGGCTATGTTTACAGATTCTGCTGGATTTACATTATCAAGTGCTGCTGATCAAGTGTGGCTGCAGCAAGAGCCCATATTTCCATGTGGTTCCTATAGTGATGATGCTCATGTTCCCATGAGTGACTATTGGGTCAATTTATCAGCACAATCTGATGAAACAAATGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

201

Amino Acids

22.61

Weight (kDa)

4.7

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	10 - 55	3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	13 - 63	4.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	171
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	30, 416
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	22
AcyI	GRCGYC	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	118
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	14, 389
ApeKI	GCWGC	5 cut(s)	107, 346, 473, 490, 493
ApoI	RAATTY	1 cut(s)	424
Asp700I	GAANNNNTTC	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	30, 174
AsuHPI	GGTGA	1 cut(s)	383
BalI	TGGCCA	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	504
BbvI	GCAGC	5 cut(s)	119, 358, 460, 477, 505
BccI	CCATC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	1 cut(s)	478
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	2 cut(s)	491, 523
BfoI	RGCGCY	1 cut(s)	175
BisI	GCNGC	5 cut(s)	108, 347, 474, 491, 494
BlsI	GCNGC	5 cut(s)	109, 348, 475, 492, 495
Bme1390I	CCNGG	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	173, 520
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	266, 363, 523
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpuEI	CTTGAG	2 cut(s)	257, 384
BsaHI	GRCGYC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	5 cut(s)	119, 358, 460, 477, 505
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	16, 391
BshNI	GGYRCC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	16, 391
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	2 cut(s)	30, 416
BspANI	GGCC	2 cut(s)	16, 391
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	173, 520
BspMAI	CTGCAG	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	155
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	264
Bst6I	CTCTTC	2 cut(s)	45, 295
BstACI	GRCGYC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	2 cut(s)	30, 174
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	478
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 499
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	2 cut(s)	491, 523
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	5 cut(s)	119, 358, 460, 477, 505
BsuRI	GGCC	2 cut(s)	16, 391
CaiI	CAGNNNCTG	1 cut(s)	449
CfoI	GCGC	2 cut(s)	30, 174
CseI	GACGC	1 cut(s)	187
CspCI	CAANNNNNGTGG	4 cut(s)	368, 399, 403, 434
CviAII	CATG	3 cut(s)	513, 539, 547
CviJI	RGCY	7 cut(s)	16, 191, 248, 391, 434, 490, 502
CviKI_1	RGCY	7 cut(s)	16, 191, 248, 391, 434, 490, 502
DdeI	CTNAG	1 cut(s)	429
DinI	GGCGCC	1 cut(s)	173
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	45, 295
EarI	CTCTTC	2 cut(s)	45, 295
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	504
EgeI	GGCGCC	1 cut(s)	173
EheI	GGCGCC	1 cut(s)	173
FaeI	CATG	3 cut(s)	516, 542, 550
FaiI	YATR	8 cut(s)	62, 83, 437, 506, 514, 525, 540, 548
FatI	CATG	3 cut(s)	512, 538, 546
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	5 cut(s)	108, 347, 474, 491, 494
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	5 cut(s)	108, 347, 474, 491, 494
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	2 cut(s)	29, 173
GluI	GCNGC	5 cut(s)	108, 347, 474, 491, 494
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	16, 391
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	187
HhaI	GCGC	2 cut(s)	30, 174
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	516, 542, 550
Hin6I	GCGC	2 cut(s)	28, 172
HinP1I	GCGC	2 cut(s)	28, 172
HinfI	GANTC	3 cut(s)	337, 395, 446
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	374, 441
Hpy188I	TCNGA	3 cut(s)	217, 430, 583
Hpy188III	TCNNGA	5 cut(s)	142, 202, 236, 276, 341
Hpy8I	GTNNAC	2 cut(s)	374, 441
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	264
HpyCH4V	TGCA	3 cut(s)	73, 107, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 499
HpyF3I	CTNAG	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	516, 542, 550
HspAI	GCGC	2 cut(s)	28, 172
KasI	GGCGCC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	30, 105, 132, 136, 288, 347, 354, 405, 438
Lsp1109I	GCAGC	5 cut(s)	119, 358, 460, 477, 505
LweI	GCATC	3 cut(s)	266, 363, 523
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	403, 551
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	5 cut(s)	59, 62, 135, 224, 282
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	5 cut(s)	4, 102, 145, 424, 565
MluNI	TGGCCA	1 cut(s)	391
Mly113I	GGCGCC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	5 cut(s)	6, 46, 185, 220, 424
Mox20I	TGGCCA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	254, 499
NarI	GGCGCC	1 cut(s)	172
NdeII	GATC	1 cut(s)	478
NlaIII	CATG	3 cut(s)	516, 542, 550
NlaIV	GGNNCC	2 cut(s)	173, 520
NmuCI	GTSAC	2 cut(s)	403, 551
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	337, 395, 446
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	5 cut(s)	109, 348, 475, 492, 495
PluTI	GGCGCC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	173, 520
PstI	CTGCAG	1 cut(s)	495
PstNI	CAGNNNCTG	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	5 cut(s)	108, 347, 474, 491, 494
Sau3AI	GATC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	504
SetI	ASST	3 cut(s)	212, 230, 250
SfaNI	GCATC	3 cut(s)	266, 363, 523
SfcI	CTRYAG	2 cut(s)	491, 523
SfoI	GGCGCC	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	236, 399
SmoI	CTYRAG	2 cut(s)	236, 399
Sse9I	AATT	5 cut(s)	4, 102, 145, 424, 565
SsiI	CCGC	2 cut(s)	30, 416
SspDI	GGCGCC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	4, 102, 145, 424, 565
TfiI	GAWTC	3 cut(s)	337, 395, 446
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseFI	GTSAC	2 cut(s)	403, 551
TseI	GCWGC	5 cut(s)	107, 346, 473, 490, 493
Tsp45I	GTSAC	2 cut(s)	403, 551
TspDTI	ATGAA	5 cut(s)	17, 150, 282, 330, 600
XapI	RAATTY	1 cut(s)	424
XbaI	TCTAGA	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.