Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Reverse (-)

45328349 .. 45329423

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1327500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGAAAAGGACTCGGGGGTGTGAGAAGACGGTAGCTGTGAAGAAAGGTCCATGGAGTCCTGAGGAGGATCAAAAGTTGGTAGCTTACATTCAGAGATACGGAATTTGGAATTGGAGTCAGATGCCTAAACCAGCTGGTCTGGCTAGGTCCGGGAAGAGTTGTAGACTTCGTTGGGTGAATTACTTAAGGCCGGATATTAAGCGTGGGAACTTCAGCAAAGACGAAGAGGAAACCATACTCGAGTTGCATCAAGCAATAGGAAACCGATGGTCTGCTATTGCAGCAAGACTTCCTGGAAGAACAGATAATGAGATTAAGAATCACTGGAACACCCACATGAAGAAACGCTTCGAGGCGGCAATTGAATCAGTACACGAAGAAGCAAAAGGATTCGGCGACAAAGAAGCCAGCAAGAACAAGTTATCTGAAACTGAACAACTGTTTCTTGTTGATGAAGCTACAAGGGCATCATCATCAAAGATGGAGACAACTTCTTCAACTTCAGCTTCATCAAGATTATTCTGTCCCGTTTGGGAATTCGGTGATCGAAAAGGCCAGATTGCAGAGCAAAGTATTTGTGCATCTGGTGTCACATTTGGTGACCTTCAAAGTTTGGATTCTCCGGTGTGGCAGCAAGAGCCTATATTTCCATGTGATTCCTACATTAATCATGCCACCAGCGATTACTGGGTCAGTTTAATCAATAAAACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

240

Amino Acids

27.09

Weight (kDa)

8.53

Isoelectric Point (pI)

58.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	7.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	1.4e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	1.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 115	1.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	105, 539
AcuI	CTGAAG	2 cut(s)	199, 489
AfaI	GTAC	1 cut(s)	375
AflII	CTTAAG	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	368, 501, 611
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	5 cut(s)	38, 86, 137, 461, 509
AluI	AGCT	5 cut(s)	38, 86, 137, 461, 509
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	78
Ama87I	CYCGRG	2 cut(s)	15, 242
AoxI	GGCC	2 cut(s)	191, 556
ApeKI	GCWGC	2 cut(s)	284, 634
ApoI	RAATTY	2 cut(s)	105, 539
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	50, 150
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	3 cut(s)	190, 557, 614
AvaI	CYCGRG	2 cut(s)	15, 242
AvaII	GGWCC	2 cut(s)	50, 150
AxyI	CCTNAGG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	296, 646
BccI	CCATC	2 cut(s)	264, 478
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	187
BisI	GCNGC	3 cut(s)	285, 360, 635
BlsI	GCNGC	3 cut(s)	286, 361, 636
Bme1390I	CCNGG	2 cut(s)	154, 297
Bme18I	GGWCC	2 cut(s)	50, 150
BmeT110I	CYCGRG	2 cut(s)	15, 242
BmgT120I	GGNCC	2 cut(s)	50, 150
BmrFI	CCNGG	2 cut(s)	154, 297
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	4 cut(s)	114, 259, 479, 593
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	625
Bse1I	ACTGG	2 cut(s)	332, 695
Bse21I	CCTNAGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	332, 695
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	296, 646
BshFI	GGCC	2 cut(s)	193, 558
BsiHKCI	CYCGRG	2 cut(s)	15, 242
BsiSI	CCGG	3 cut(s)	153, 194, 626
BslFI	GGGAC	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	513
BsnI	GGCC	2 cut(s)	193, 558
BsoBI	CYCGRG	2 cut(s)	15, 242
Bsp143I	GATC	2 cut(s)	70, 547
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	1 cut(s)	359
BspANI	GGCC	2 cut(s)	193, 558
BspCNI	CTCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	332, 695
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	70, 547
BssT1I	CCWWGG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	34, 444
Bst6I	CTCTTC	2 cut(s)	152, 222
BstAFI	CTTAAG	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	53
BstEII	GGTNACC	1 cut(s)	602
BstKTI	GATC	2 cut(s)	73, 550
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	2 cut(s)	70, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 284, 467, 640
BstNI	CCWGG	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	152, 295
BstV1I	GCAGC	2 cut(s)	296, 646
BstV2I	GAAGAC	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	193, 558
BtgI	CCRYGG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	412
Cfr13I	GGNCC	2 cut(s)	50, 150
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	4 cut(s)	54, 340, 654, 674
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	72, 549
DpnII	GATC	2 cut(s)	70, 547
Eam1104I	CTCTTC	2 cut(s)	152, 222
EarI	CTCTTC	2 cut(s)	152, 222
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	50, 150
Eco57I	CTGAAG	2 cut(s)	199, 489
Eco81I	CCTNAGG	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	15, 242
Eco91I	GGTNACC	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	602
EcoRI	GAATTC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	57, 343, 657, 677
FaiI	YATR	6 cut(s)	55, 239, 341, 647, 655, 675
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	4 cut(s)	53, 339, 653, 673
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	285, 360, 635
Fsp4HI	GCNGC	3 cut(s)	285, 360, 635
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	3 cut(s)	285, 360, 635
HaeIII	GGCC	2 cut(s)	193, 558
HapII	CCGG	3 cut(s)	153, 194, 626
Hin1II	CATG	4 cut(s)	57, 343, 657, 677
HinfI	GANTC	8 cut(s)	13, 58, 118, 322, 368, 393, 620, 659
HpaII	CCGG	3 cut(s)	153, 194, 626
HphI	GGTGA	3 cut(s)	190, 557, 614
Hpy166II	GTNNAC	2 cut(s)	167, 376
Hpy188I	TCNGA	3 cut(s)	96, 123, 430
Hpy188III	TCNNGA	2 cut(s)	62, 516
Hpy8I	GTNNAC	2 cut(s)	167, 376
HpyAV	CCTTC	1 cut(s)	617
HpyCH4III	ACNGT	2 cut(s)	34, 444
HpyCH4V	TGCA	4 cut(s)	250, 284, 566, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 284, 467, 640
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	57, 343, 657, 677
Kzo9I	GATC	2 cut(s)	70, 547
Lsp1109I	GCAGC	2 cut(s)	296, 646
LweI	GCATC	4 cut(s)	114, 259, 479, 593
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	592, 602
MalI	GATC	2 cut(s)	72, 549
MboI	GATC	2 cut(s)	70, 547
MboII	GAAGA	8 cut(s)	40, 55, 169, 239, 312, 355, 392, 489
MfeI	CAATTG	1 cut(s)	363
MluCI	AATT	5 cut(s)	105, 112, 181, 363, 539
MlyI	GAGTC	3 cut(s)	7, 67, 127
MnlI	CCTC	4 cut(s)	58, 61, 223, 349
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	5 cut(s)	188, 201, 318, 669, 701
MslI	CAYNNNNRTG	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	187
MspI	CCGG	3 cut(s)	153, 194, 626
MspR9I	CCNGG	2 cut(s)	154, 297
MunI	CAATTG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	143, 284, 467, 640
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	70, 547
NlaIII	CATG	4 cut(s)	57, 343, 657, 677
NmuCI	GTSAC	2 cut(s)	592, 602
PaeR7I	CTCGAG	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	5 cut(s)	322, 368, 393, 620, 659
PfoI	TCCNGGA	2 cut(s)	152, 295
PkrI	GCNGC	3 cut(s)	286, 361, 636
PleI	GAGTC	3 cut(s)	7, 66, 126
PpsI	GAGTC	3 cut(s)	7, 66, 126
PshBI	ATTAAT	1 cut(s)	669
Psp6I	CCWGG	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	50, 150
PspXI	VCTCGAGB	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	5 cut(s)	188, 201, 318, 669, 701
SatI	GCNGC	3 cut(s)	285, 360, 635
Sau3AI	GATC	2 cut(s)	70, 547
Sau96I	GGNCC	2 cut(s)	50, 150
SchI	GAGTC	3 cut(s)	7, 67, 127
ScrFI	CCNGG	2 cut(s)	154, 297
SetI	ASST	8 cut(s)	40, 52, 88, 139, 152, 463, 511, 609
SfaNI	GCATC	4 cut(s)	114, 259, 479, 593
Sfr274I	CTCGAG	1 cut(s)	242
SinI	GGWCC	2 cut(s)	50, 150
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	187, 242
SmoI	CTYRAG	2 cut(s)	187, 242
Sse9I	AATT	5 cut(s)	105, 112, 181, 363, 539
SsiI	CCGC	1 cut(s)	359
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	152, 295
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	2 cut(s)	34, 444
TaqI	TCGA	3 cut(s)	243, 354, 550
TasI	AATT	5 cut(s)	105, 112, 181, 363, 539
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	5 cut(s)	322, 368, 393, 620, 659
Tru1I	TTAA	5 cut(s)	188, 201, 318, 669, 701
Tru9I	TTAA	5 cut(s)	188, 201, 318, 669, 701
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	2 cut(s)	592, 602
TseI	GCWGC	2 cut(s)	284, 634
Tsp45I	GTSAC	2 cut(s)	592, 602
TspDTI	ATGAA	3 cut(s)	356, 471, 501
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	332
Vha464I	CTTAAG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	50, 150
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	2 cut(s)	105, 539
XhoI	CTCGAG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.