Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015569

Physical Location & Seq

Genomic Coordinates Reverse (-)

39174684 .. 39175901

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1305700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGAAAAGGACTCAGCGGTGTGAGAAGACGGTAGCTGTGAAGAAGGGTCCATGGAGTCCTGAGGAGGATCACAAGTTGGTAGCTTACATTCAAAGATATGGAATTTGGAATTGGAGTCGGATGCCTAAACCAGCTGGTCTGGCCAGGTCCGGGAAGAGTTGTAGACTTCGTTGGGTGAATTACCTAAGGCCGGATATTAAGCGTGGGAACTTCGGCAAAGACGAAGTGGAAACCATACTTGAGTTGCATCAAGCAATAGGAAACCGATGGTCTGCTATTGCAGCAAGGCTTCCCGGAAGAACGGACAATGAGATTAAGAATTACTGGCACACCCACATGAAAAAACGCTTCAAGGCGGGGATTGAATCAGTACACGAAGAAGCAAAAGGGTCCGGTGACAAGGAAGCCAGCAAGAACAAGTTATCTGAAGCTGGACAACTCTTTCTTGTTGATGAAGCTACGAAGGTAGCATCATTAAAGTCGGAGGCAACTTGTTCAGCTTCATCGAGCGTATACTTTCCCGTTTGGGAATTCGACGATCAAAAAGGCCAGATTGCAGAGCAAAGTGTTTGTGCATCTGATGTCACATTTGGTGAGCTTCAAAGTTTGGATTCTCAAGTGTGGCAGCAAGAGCCTATATTTCCATGTGATTCCTACATTAATCATGTCACCAGTGATTACTGGGTCAGTTTAATCGATAAAACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

238

Amino Acids

26.9

Weight (kDa)

8.5

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	1.1e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 78	2e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	3.8e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g03680
malus_domestica	MD05G1327500.v1.1 MD10G1305700.v1.1
prunus_persica	Prupe.4G034000_v2.0.a1
pyrus_communis	pycom05g30170 pycom10g25800
rosa_chinensis	RchiOBHm_Chr5g0005721
rosa_laevigata	RLG00000031321
rosa_multiflora	Rmu_co8433021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070120
rosa_rugosa	Rorug04G0417600
rosa_samantha	Rh5AG045200 Rh5BG043900 Rh5CG052700 Rh5DG043700
rosa_wichuraiana	Rw5G004540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	166, 516
AciI	CCGC	2 cut(s)	19, 359
AclWI	GGATC	1 cut(s)	78
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	105, 533
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	153, 193
AgsI	TTSAA	4 cut(s)	95, 355, 368, 605
AjnI	CCWGG	1 cut(s)	146
AjuI	GAANNNNNNNTTGG	2 cut(s)	97, 129
AluBI	AGCT	7 cut(s)	38, 86, 137, 434, 461, 503, 601
AluI	AGCT	7 cut(s)	38, 86, 137, 434, 461, 503, 601
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	3 cut(s)	144, 191, 550
ApeKI	GCWGC	2 cut(s)	284, 628
ApoI	RAATTY	2 cut(s)	105, 533
AseI	ATTAAT	1 cut(s)	663
AspS9I	GGNCC	3 cut(s)	50, 150, 393
AsuC2I	CCSGG	2 cut(s)	154, 297
AsuHPI	GGTGA	4 cut(s)	190, 410, 608, 664
AvaII	GGWCC	3 cut(s)	50, 150, 393
AxyI	CCTNAGG	2 cut(s)	63, 188
BalI	TGGCCA	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	296, 640
BccI	CCATC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	154, 297
BisI	GCNGC	2 cut(s)	285, 629
BlsI	GCNGC	2 cut(s)	286, 630
Bme1390I	CCNGG	3 cut(s)	148, 154, 297
Bme18I	GGWCC	3 cut(s)	50, 150, 393
BmgT120I	GGNCC	3 cut(s)	50, 150, 393
BmiI	GGNNCC	2 cut(s)	51, 394
BmrFI	CCNGG	3 cut(s)	148, 154, 297
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	4 cut(s)	114, 259, 482, 587
BmuI	ACTGGG	1 cut(s)	694
BpiI	GAAGAC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	263, 603
BpuMI	CCSGG	2 cut(s)	154, 297
Bsa29I	ATCGAT	1 cut(s)	699
BsaJI	CCNNGG	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 193
Bse1I	ACTGG	3 cut(s)	332, 675, 689
Bse21I	CCTNAGG	2 cut(s)	63, 188
BseBI	CCWGG	1 cut(s)	148
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	153, 193
BseMII	CTCAG	2 cut(s)	29, 54
BseNI	ACTGG	3 cut(s)	332, 675, 689
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	296, 640
BshFI	GGCC	3 cut(s)	146, 193, 552
BshVI	ATCGAT	1 cut(s)	699
BsiSI	CCGG	4 cut(s)	153, 194, 297, 396
BslI	CCNNNNNNNGG	2 cut(s)	153, 193
BsnI	GGCC	3 cut(s)	146, 193, 552
Bsp143I	GATC	2 cut(s)	70, 541
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	2 cut(s)	19, 359
BspANI	GGCC	3 cut(s)	146, 193, 552
BspCNI	CTCAG	2 cut(s)	28, 55
BspDI	ATCGAT	1 cut(s)	699
BspLI	GGNNCC	2 cut(s)	51, 394
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	332, 675, 689
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	70, 541
BssNAI	GTATAC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	53
Bst1107I	GTATAC	1 cut(s)	517
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	15, 63, 188
BstDSI	CCRYGG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	73, 544
BstMBI	GATC	2 cut(s)	70, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 284, 634
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	146, 152, 295
BstV1I	GCAGC	2 cut(s)	296, 640
BstV2I	GAAGAC	1 cut(s)	35
BstZ17I	GTATAC	1 cut(s)	517
Bsu15I	ATCGAT	1 cut(s)	699
Bsu36I	CCTNAGG	2 cut(s)	63, 188
BsuRI	GGCC	3 cut(s)	146, 193, 552
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	412
Cfr13I	GGNCC	3 cut(s)	50, 150, 393
ClaI	ATCGAT	1 cut(s)	699
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	4 cut(s)	54, 340, 648, 668
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	3 cut(s)	15, 63, 188
DpnI	GATC	2 cut(s)	72, 543
DpnII	GATC	2 cut(s)	70, 541
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	53
Eco47I	GGWCC	3 cut(s)	50, 150, 393
Eco57I	CTGAAG	1 cut(s)	450
Eco81I	CCTNAGG	2 cut(s)	63, 188
EcoRI	GAATTC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	4 cut(s)	57, 343, 651, 671
FaiI	YATR	8 cut(s)	55, 102, 239, 341, 517, 641, 649, 669
FatI	CATG	4 cut(s)	53, 339, 647, 667
FauI	CCCGC	1 cut(s)	352
FblI	GTMKAC	2 cut(s)	166, 516
Fnu4HI	GCNGC	2 cut(s)	285, 629
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	2 cut(s)	285, 629
GluI	GCNGC	2 cut(s)	285, 629
HaeIII	GGCC	3 cut(s)	146, 193, 552
HapII	CCGG	4 cut(s)	153, 194, 297, 396
Hin1II	CATG	4 cut(s)	57, 343, 651, 671
HinfI	GANTC	6 cut(s)	13, 58, 118, 368, 614, 653
HpaII	CCGG	4 cut(s)	153, 194, 297, 396
HphI	GGTGA	4 cut(s)	190, 410, 608, 664
Hpy166II	GTNNAC	3 cut(s)	167, 376, 517
Hpy188I	TCNGA	4 cut(s)	123, 430, 487, 583
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	3 cut(s)	167, 376, 517
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	40, 460
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	4 cut(s)	250, 284, 560, 578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 284, 634
HpyF3I	CTNAG	3 cut(s)	15, 63, 188
Hsp92II	CATG	4 cut(s)	57, 343, 651, 671
Kzo9I	GATC	2 cut(s)	70, 541
Lsp1109I	GCAGC	2 cut(s)	296, 640
LweI	GCATC	4 cut(s)	114, 259, 482, 587
MaeIII	GTNAC	3 cut(s)	398, 586, 670
MalI	GATC	2 cut(s)	72, 543
MboI	GATC	2 cut(s)	70, 541
MboII	GAAGA	5 cut(s)	40, 55, 169, 312, 392
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	5 cut(s)	105, 112, 181, 322, 533
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	3 cut(s)	7, 67, 127
MmeI	TCCRAC	2 cut(s)	101, 465
MnlI	CCTC	3 cut(s)	58, 61, 481
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	5 cut(s)	201, 318, 479, 663, 695
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	2 cut(s)	19, 137
MspI	CCGG	4 cut(s)	153, 194, 297, 396
MspR9I	CCNGG	3 cut(s)	148, 154, 297
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	3 cut(s)	143, 284, 634
NciI	CCSGG	2 cut(s)	154, 297
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	70, 541
NlaIII	CATG	4 cut(s)	57, 343, 651, 671
NlaIV	GGNNCC	2 cut(s)	51, 394
NmuCI	GTSAC	3 cut(s)	398, 586, 670
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	368, 614, 653
PfoI	TCCNGGA	2 cut(s)	152, 295
PkrI	GCNGC	2 cut(s)	286, 630
PleI	GAGTC	3 cut(s)	7, 66, 126
PpsI	GAGTC	3 cut(s)	7, 66, 126
PshBI	ATTAAT	1 cut(s)	663
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	51, 394
PspPI	GGNCC	3 cut(s)	50, 150, 393
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	5 cut(s)	201, 318, 479, 663, 695
SatI	GCNGC	2 cut(s)	285, 629
Sau3AI	GATC	2 cut(s)	70, 541
Sau96I	GGNCC	3 cut(s)	50, 150, 393
SchI	GAGTC	3 cut(s)	7, 67, 127
ScrFI	CCNGG	3 cut(s)	148, 154, 297
SfaNI	GCATC	4 cut(s)	114, 259, 482, 587
SinI	GGWCC	3 cut(s)	50, 150, 393
SmiMI	CAYNNNNRTG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	242, 618
SmoI	CTYRAG	2 cut(s)	242, 618
Sse9I	AATT	5 cut(s)	105, 112, 181, 322, 533
SsiI	CCGC	2 cut(s)	19, 359
StyD4I	CCNGG	3 cut(s)	146, 152, 295
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	509, 537, 699
TasI	AATT	5 cut(s)	105, 112, 181, 322, 533
TatI	WGTACW	1 cut(s)	373
TfiI	GAWTC	3 cut(s)	368, 614, 653
Tru1I	TTAA	5 cut(s)	201, 318, 479, 663, 695
Tru9I	TTAA	5 cut(s)	201, 318, 479, 663, 695
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	3 cut(s)	398, 586, 670
TseI	GCWGC	2 cut(s)	284, 628
Tsp45I	GTSAC	3 cut(s)	398, 586, 670
TspDTI	ATGAA	3 cut(s)	356, 471, 495
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	3 cut(s)	50, 150, 393
VspI	ATTAAT	1 cut(s)	663
XapI	RAATTY	2 cut(s)	105, 533
XmiI	GTMKAC	2 cut(s)	166, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.