FvH4_3g04030

Telomerase Cajal body protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
2248238 .. 2251991
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04030.t2

Sequence Viewer

Length: 1290 bp
ATGGTAGAAGAAGAAGAAGAGCAGCAACATCTATCCAATTCGCCCAAACCAGACCCCGAAATTACTGAAAACCCCATCCAGCAAGAAGAAGAGTACTCATGGCCGGCGATTCGGTTCGACGTTCCTCCCCAGAGAACCTACCACTTCTCCCACCAGTTCAGAACTCCTTCAAACCCTAACAATTTCCTCAAGGCCGTCAAATGGTCCCCAGATGGTTCTTGCTTCCTCACCAGTTCTGAGGACAACACCCTCCGTGTTTTCGCATTACCGGAAAGTGGGAATGAATACGTTAACGGCTATTCTGTGCCTGCTGATGAAGCTGCAGACTCGTACGCTGCAAGCCTTGTTATGAATGAGGGGGAGTCGGTATATGACTACTGTTGGTACCCTTACATGTCTGCCTCAGACCCAGTTACCTGTGTTTTTGCAAGTACAGCTCGAGATCATCCGATTCATCTTTGGGACGCTTCTTCTGGTCAGCTACGTTGCACTTACCGTGCTTATGATGCTGTGGATGAAATCACAGCTGCTTTTTCAATTGCCTTTAATCCCGGTGGAACAAAGATTTTTGCTGGATACAACAAACTAGTCAGGGTGTTTGATTTACATCGCCCTGGTAGAGATTACAACCAGTATTCGACGGTTCAAGGAAATAAAGAAGGCCAAACTGGTATAATGTCTGCAATGGCTTTTTCTCCAACCCATAATGGACTGCTAGCTATAGGCTCTTACAGCAAGACTACTGGAATATATAGAGAAGACAATATGGAACTTTTATATGTATTACATGGACATGAAGGTGGGATTACACATGTCCAGTTCTCAAAGGATGGAAATTACTTATATACTGGAGGTCGGAAGGATCCTTATATACTATGCTGGGATATACGCAAATCTGTTGATGTTGTCTACAAGTTATATAGGTCTGCAGAATATACCAACCAGCGGATTCTGTTTGATATTGAGCCACGTGGCCGCTATCTTTGTACGGGTGGTCAGGACGGTTTTGTTCATATATATGATCTTCAAACTGGACAATGGGTGTCAGGCTTCCAAGCTGCATTGGATACTGTTAATGGATTCTCTTTTCATCCATTTCTGCCAATGGCTACATCTTCTTCAGGCCACCGAAGATTTCTTCCTCCTGATGATGGCATAGATGAATTGCATTTGAGTGGTCATGAAAACTGTGCTTCCGTGTGGAGTTTCTCTGTTGCTTCAATGGTGGAGAACAATGTTGAAATTTATGGCGACAATCACAACAGCCAGTACTGTTCCCAGACTCTGTAG

Protein Analysis

430

Amino Acids

48.34

Weight (kDa)

4.96

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 63 - 365 1.3e-26 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 133 - 299 2.3e-12 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 138 - 371 4e-16 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 143 - 300 1.2e-07 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 218 - 363 6.5e-14 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 219 - 372 2.8e-16 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 220 - 366 3.1e-10 CDC20/Fizzy WD40 domain
WDR55 PF24796 225 - 361 3.6e-08 WDR55
Beta-prop_TEP1_2nd PF25047 250 - 352 1e-09 TEP-1 second beta-propeller
WD40 PF00400 255 - 293 6.3e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 909
AciI CCGC 2 cut(s) 946, 976
AclWI GGATC 2 cut(s) 857, 870
AcoI YGGCCR 2 cut(s) 101, 973
AcsI RAATTY 1 cut(s) 1242
AcuI CTGAAG 1 cut(s) 1104
AcvI CACGTG 1 cut(s) 971
AfaI GTAC 6 cut(s) 95, 332, 386, 433, 988, 1271
AfiI CCNNNNNNNGG 4 cut(s) 201, 275, 945, 1151
AflIII ACRYGT 2 cut(s) 393, 811
AgsI TTSAA 6 cut(s) 171, 537, 647, 1028, 1221, 1241
AhlI ACTAGT 1 cut(s) 586
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 6 cut(s) 320, 437, 481, 527, 719, 1058
AluI AGCT 6 cut(s) 320, 437, 481, 527, 719, 1058
AlwI GGATC 2 cut(s) 857, 870
AlwNI CAGNNNCTG 1 cut(s) 1285
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 5 cut(s) 101, 192, 661, 973, 1123
ApeKI GCWGC 5 cut(s) 22, 320, 335, 527, 1058
ApoI RAATTY 1 cut(s) 1242
Asp700I GAANNNNTTC 1 cut(s) 166
Asp718I GGTACC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 715
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 204
BamHI GGATCC 1 cut(s) 862
BanI GGYRCC 1 cut(s) 384
BbrPI CACGTG 1 cut(s) 971
BbsI GAAGAC 1 cut(s) 765
BbvI GCAGC 5 cut(s) 34, 307, 322, 514, 1045
BccI CCATC 4 cut(s) 83, 206, 824, 1145
BceAI ACGGC 2 cut(s) 179, 310
BciT130I CCWGG 1 cut(s) 615
BciVI GTATCC 2 cut(s) 569, 1060
BcnI CCSGG 1 cut(s) 552
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 2 cut(s) 587, 716
BfmI CTRYAG 4 cut(s) 321, 720, 927, 1286
BfuI GTATCC 2 cut(s) 569, 1060
BisI GCNGC 6 cut(s) 23, 321, 336, 528, 976, 1059
BlsI GCNGC 6 cut(s) 24, 322, 337, 529, 977, 1060
BmcAI AGTACT 2 cut(s) 95, 1271
Bme1390I CCNGG 2 cut(s) 552, 615
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 3 cut(s) 206, 386, 864
BmrFI CCNGG 2 cut(s) 552, 615
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 496
BmtI GCTAGC 1 cut(s) 719
BmuI ACTGGG 1 cut(s) 404
BpiI GAAGAC 1 cut(s) 765
BpmI CTGGAG 1 cut(s) 870
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 971
BsaBI GATNNNNATC 1 cut(s) 606
BsaJI CCNNGG 1 cut(s) 613
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 275, 945, 1151
Bse118I RCCGGY 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 690
Bse8I GATNNNNATC 1 cut(s) 606
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 5 cut(s) 75, 445, 520, 835, 1090
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 4 cut(s) 201, 275, 945, 1151
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 228, 417
BseXI GCAGC 5 cut(s) 34, 307, 322, 514, 1045
BseYI CCCAGC 1 cut(s) 879
BshFI GGCC 5 cut(s) 103, 194, 663, 975, 1125
BshNI GGYRCC 1 cut(s) 384
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 3 cut(s) 104, 269, 552
BsiWI CGTACG 1 cut(s) 330
BslFI GGGAC 2 cut(s) 190, 476
BslI CCNNNNNNNGG 4 cut(s) 201, 275, 945, 1151
BsmFI GGGAC 2 cut(s) 190, 476
BsnI GGCC 5 cut(s) 103, 194, 663, 975, 1125
BsoBI CYCGRG 1 cut(s) 438
Bsp143I GATC 3 cut(s) 442, 862, 1021
BspACI CCGC 2 cut(s) 946, 976
BspANI GGCC 5 cut(s) 103, 194, 663, 975, 1125
BspCNI CTCAG 2 cut(s) 229, 416
BspHI TCATGA 1 cut(s) 1180
BspLI GGNNCC 3 cut(s) 206, 386, 864
BspMAI CTGCAG 2 cut(s) 325, 931
BspOI GCTAGC 1 cut(s) 719
BspPI GGATC 2 cut(s) 857, 870
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 384
BsrDI GCAATG 1 cut(s) 690
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 613
BssMI GATC 3 cut(s) 442, 862, 1021
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 7 cut(s) 380, 497, 643, 1004, 1072, 1190, 1274
Bst6I CTCTTC 2 cut(s) 12, 84
BstBAI YACGTR 1 cut(s) 971
BstC8I GCNNGC 4 cut(s) 105, 309, 340, 717
BstDEI CTNAG 2 cut(s) 237, 403
BstF5I GGATG 5 cut(s) 75, 445, 520, 835, 1090
BstKTI GATC 3 cut(s) 445, 865, 1024
BstMBI GATC 3 cut(s) 442, 862, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 317, 434, 506, 732
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 2 cut(s) 397, 815
BstSCI CCNGG 2 cut(s) 550, 613
BstSFI CTRYAG 4 cut(s) 321, 720, 927, 1286
BstV1I GCAGC 5 cut(s) 34, 307, 322, 514, 1045
BstV2I GAAGAC 1 cut(s) 765
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuI GTATCC 2 cut(s) 569, 1060
BsuRI GGCC 5 cut(s) 103, 194, 663, 975, 1125
BtgZI GCGATG 1 cut(s) 593
BtsCI GGATG 5 cut(s) 75, 445, 520, 835, 1090
Cac8I GCNNGC 4 cut(s) 105, 309, 340, 717
CaiI CAGNNNCTG 1 cut(s) 1285
CciI TCATGA 1 cut(s) 1180
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 204
CseI GACGC 1 cut(s) 473
Csp6I GTAC 6 cut(s) 94, 331, 385, 432, 987, 1270
CviAII CATG 6 cut(s) 99, 394, 788, 794, 812, 1181
CviQI GTAC 6 cut(s) 94, 331, 385, 432, 987, 1270
DdeI CTNAG 2 cut(s) 237, 403
DpnI GATC 3 cut(s) 444, 864, 1023
DpnII GATC 3 cut(s) 442, 862, 1021
EaeI YGGCCR 2 cut(s) 101, 973
Eam1104I CTCTTC 2 cut(s) 12, 84
EarI CTCTTC 2 cut(s) 12, 84
Eco47I GGWCC 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 1104
Eco72I CACGTG 1 cut(s) 971
Eco88I CYCGRG 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 613
FaeI CATG 6 cut(s) 102, 397, 791, 797, 815, 1184
FaqI GGGAC 2 cut(s) 190, 476
FatI CATG 6 cut(s) 98, 393, 787, 793, 811, 1180
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 6 cut(s) 23, 321, 336, 528, 976, 1059
FokI GGATG 5 cut(s) 62, 432, 527, 842, 1077
Fsp4HI GCNGC 6 cut(s) 23, 321, 336, 528, 976, 1059
FspBI CTAG 2 cut(s) 587, 716
GluI GCNGC 6 cut(s) 23, 321, 336, 528, 976, 1059
GsaI CCCAGC 1 cut(s) 883
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 5 cut(s) 103, 194, 663, 975, 1125
HapII CCGG 3 cut(s) 104, 269, 552
HgaI GACGC 1 cut(s) 473
Hin1II CATG 6 cut(s) 102, 397, 791, 797, 815, 1184
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 7 cut(s) 109, 326, 362, 451, 949, 1080, 1282
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 3 cut(s) 104, 269, 552
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 2 cut(s) 292, 910
Hpy188I TCNGA 5 cut(s) 161, 238, 406, 450, 858
Hpy188III TCNNGA 4 cut(s) 440, 998, 1145, 1181
Hpy8I GTNNAC 2 cut(s) 292, 910
Hpy99I CGWCG 2 cut(s) 122, 643
HpyAV CCTTC 4 cut(s) 177, 653, 791, 853
HpyCH4III ACNGT 7 cut(s) 380, 497, 643, 1004, 1072, 1190, 1274
HpyCH4IV ACGT 4 cut(s) 120, 288, 484, 970
HpyCH4V TGCA 8 cut(s) 323, 338, 428, 489, 683, 929, 1061, 1168
HpyF10VI GCNNNNNNNGC 4 cut(s) 317, 434, 506, 732
HpyF3I CTNAG 2 cut(s) 237, 403
HpySE526I ACGT 4 cut(s) 120, 288, 484, 970
Hsp92II CATG 6 cut(s) 102, 397, 791, 797, 815, 1184
KpnI GGTACC 1 cut(s) 388
KroI GCCGGC 1 cut(s) 103
KroNI GCCGGC 1 cut(s) 105
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 442, 862, 1021
LguI GCTCTTC 1 cut(s) 12
Lsp1109I GCAGC 5 cut(s) 34, 307, 322, 514, 1045
LweI GCATC 1 cut(s) 496
MaeI CTAG 2 cut(s) 587, 716
MaeII ACGT 4 cut(s) 120, 288, 484, 970
MaeIII GTNAC 1 cut(s) 412
MalI GATC 3 cut(s) 444, 864, 1023
MboI GATC 3 cut(s) 442, 862, 1021
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 1 cut(s) 862
MluCI AATT 7 cut(s) 37, 60, 181, 537, 835, 1163, 1242
MlyI GAGTC 3 cut(s) 320, 371, 1276
MmeI TCCRAC 2 cut(s) 722, 836
MnlI CCTC 9 cut(s) 135, 197, 232, 236, 260, 349, 412, 845, 1152
MroNI GCCGGC 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 166
MseI TTAA 3 cut(s) 291, 546, 1074
MslI CAYNNNNRTG 4 cut(s) 792, 798, 1017, 1173
MspA1I CMGCKG 2 cut(s) 527, 946
MspI CCGG 3 cut(s) 104, 269, 552
MspR9I CCNGG 2 cut(s) 552, 615
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 4 cut(s) 317, 434, 506, 732
NaeI GCCGGC 1 cut(s) 105
NciI CCSGG 1 cut(s) 552
NdeII GATC 3 cut(s) 442, 862, 1021
NgoMIV GCCGGC 1 cut(s) 103
NheI GCTAGC 1 cut(s) 715
NlaIII CATG 6 cut(s) 102, 397, 791, 797, 815, 1184
NlaIV GGNNCC 3 cut(s) 206, 386, 864
NspI RCATGY 2 cut(s) 397, 815
PaeR7I CTCGAG 1 cut(s) 438
PagI TCATGA 1 cut(s) 1180
PciI ACATGT 2 cut(s) 393, 811
PciSI GCTCTTC 1 cut(s) 12
PdiI GCCGGC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 166
PfeI GAWTC 4 cut(s) 109, 451, 949, 1080
Pfl23II CGTACG 1 cut(s) 330
PkrI GCNGC 6 cut(s) 24, 322, 337, 529, 977, 1060
PleI GAGTC 3 cut(s) 320, 370, 1276
PmaCI CACGTG 1 cut(s) 971
PmlI CACGTG 1 cut(s) 971
PpsI GAGTC 3 cut(s) 320, 370, 1276
Ppu21I YACGTR 1 cut(s) 971
PscI ACATGT 2 cut(s) 393, 811
Psp6I CCWGG 1 cut(s) 613
PspCI CACGTG 1 cut(s) 971
PspFI CCCAGC 1 cut(s) 879
PspGI CCWGG 1 cut(s) 613
PspLI CGTACG 1 cut(s) 330
PspN4I GGNNCC 3 cut(s) 206, 386, 864
PspPI GGNCC 1 cut(s) 204
PstI CTGCAG 2 cut(s) 325, 931
PstNI CAGNNNCTG 1 cut(s) 1285
PsuI RGATCY 1 cut(s) 862
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 6 cut(s) 95, 332, 386, 433, 988, 1271
RsaNI GTAC 6 cut(s) 94, 331, 385, 432, 987, 1270
RseI CAYNNNNRTG 4 cut(s) 792, 798, 1017, 1173
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 291, 546, 1074
SatI GCNGC 6 cut(s) 23, 321, 336, 528, 976, 1059
Sau3AI GATC 3 cut(s) 442, 862, 1021
Sau96I GGNCC 1 cut(s) 204
ScaI AGTACT 2 cut(s) 95, 1271
SchI GAGTC 3 cut(s) 320, 371, 1276
ScrFI CCNGG 2 cut(s) 552, 615
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 4 cut(s) 321, 720, 927, 1286
Sfr274I CTCGAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 438
SmiMI CAYNNNNRTG 4 cut(s) 792, 798, 1017, 1173
SmlI CTYRAG 2 cut(s) 188, 438
SmoI CTYRAG 2 cut(s) 188, 438
SpeI ACTAGT 1 cut(s) 586
Sse9I AATT 7 cut(s) 37, 60, 181, 537, 835, 1163, 1242
SsiI CCGC 2 cut(s) 946, 976
SspMI CTAG 2 cut(s) 587, 716
StyD4I CCNGG 2 cut(s) 550, 613
TaaI ACNGT 7 cut(s) 380, 497, 643, 1004, 1072, 1190, 1274
TaiI ACGT 4 cut(s) 123, 291, 487, 973
TaqI TCGA 3 cut(s) 117, 439, 638
TasI AATT 7 cut(s) 37, 60, 181, 537, 835, 1163, 1242
TatI WGTACW 3 cut(s) 93, 431, 1269
TauI GCSGC 1 cut(s) 978
TfiI GAWTC 4 cut(s) 109, 451, 949, 1080
Tru1I TTAA 3 cut(s) 291, 546, 1074
Tru9I TTAA 3 cut(s) 291, 546, 1074
TseI GCWGC 5 cut(s) 22, 320, 335, 527, 1058
TspGWI ACGGA 2 cut(s) 242, 1186
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 1242
XceI RCATGY 2 cut(s) 397, 815
XhoI CTCGAG 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 909
XmnI GAANNNNTTC 1 cut(s) 166
XspI CTAG 2 cut(s) 587, 716
ZrmI AGTACT 2 cut(s) 95, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.