Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

58129532 .. 58131556

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0421200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCAGACTTGAAACAAGCACCGAGCAAACCAACCTTCACAAAGGTTATGCAGCTCCGCCCAATGACCTCTGGTGTCACTCTCACTGTAAAGGTTGTTAATACTAAGATAGTATGCCCGAAGGGACGTGCTGGTGGGCCTCGAGGCCAAATGCGAATTGCTGATTGCTTGGTTGGCGATGAAACGGCAATGATAATCTTCACGGCTAGAAACGATCAAGTGGACTTGATGAAAGAGGGTTCGACTGTAACCCTGCGAAATGCCAAAATTGACACGTTTAAAGGATCAATGAGGCTTGCTGTGGACAAAAGTGGCCGTATTGAAGTTGCTGAGCCTGCCAATTTTACCGTGATGGAAAATAACAACCTCTCACTCATTGAATTTGAACGTGTCGATGTCGTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005697 GO:0006996 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0015030 GO:0016043 GO:0016604 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032202 GO:0032203 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

135

Amino Acids

14.79

Weight (kDa)

9.3

Isoelectric Point (pI)

15.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_Ssb-like	PF21473	19 - 109	5.3e-39	Single-stranded DNA binding protein Ssb-like, OB fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	141
AciI	CCGC	1 cut(s)	58
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	380
AflIII	ACRYGT	2 cut(s)	273, 388
AgsI	TTSAA	4 cut(s)	13, 323, 380, 386
AjiI	CACGTC	1 cut(s)	128
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	3 cut(s)	137, 145, 313
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	3 cut(s)	201, 219, 300
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	321
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	3 cut(s)	139, 147, 315
BsiHKCI	CYCGRG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	139, 147, 315
BsoBI	CYCGRG	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	214, 284
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	1 cut(s)	58
BspANI	GGCC	3 cut(s)	139, 147, 315
BspCNI	CTCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	195
BssMI	GATC	2 cut(s)	214, 284
Bst4CI	ACNGT	3 cut(s)	88, 247, 349
BstC8I	GCNNGC	2 cut(s)	297, 336
BstDEI	CTNAG	2 cut(s)	105, 330
BstKTI	GATC	2 cut(s)	217, 287
BstMBI	GATC	2 cut(s)	214, 284
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 335
BstV1I	GCAGC	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	139, 147, 315
BtgZI	GCGATG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	297, 336
Cfr13I	GGNCC	1 cut(s)	137
CviJI	RGCY	7 cut(s)	55, 139, 147, 206, 295, 315, 334
CviKI_1	RGCY	7 cut(s)	55, 139, 147, 206, 295, 315, 334
DdeI	CTNAG	2 cut(s)	105, 330
DpnI	GATC	2 cut(s)	216, 286
DpnII	GATC	2 cut(s)	214, 284
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	141
FaiI	YATR	4 cut(s)	50, 115, 404, 406
FaqI	GGGAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	139, 147, 315
Hpy166II	GTNNAC	2 cut(s)	223, 304
Hpy8I	GTNNAC	2 cut(s)	223, 304
HpyAV	CCTTC	2 cut(s)	46, 115
HpyCH4III	ACNGT	3 cut(s)	88, 247, 349
HpyCH4IV	ACGT	3 cut(s)	127, 275, 388
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 335
HpyF3I	CTNAG	2 cut(s)	105, 330
HpySE526I	ACGT	3 cut(s)	127, 275, 388
Kzo9I	GATC	2 cut(s)	214, 284
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	4 cut(s)	57, 117, 266, 348
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	3 cut(s)	127, 275, 388
MaeIII	GTNAC	2 cut(s)	76, 247
MalI	GATC	2 cut(s)	216, 286
MboI	GATC	2 cut(s)	214, 284
MboII	GAAGA	1 cut(s)	190
MluCI	AATT	4 cut(s)	156, 267, 340, 380
MnlI	CCTC	6 cut(s)	79, 137, 150, 229, 285, 377
MseI	TTAA	2 cut(s)	99, 279
MwoI	GCNNNNNNNGC	2 cut(s)	174, 335
NdeII	GATC	2 cut(s)	214, 284
NmuCI	GTSAC	1 cut(s)	76
PaeR7I	CTCGAG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	137
PspXI	VCTCGAGB	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	99, 279
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	2 cut(s)	214, 284
Sau96I	GGNCC	1 cut(s)	137
SetI	ASST	9 cut(s)	38, 48, 57, 71, 96, 130, 278, 369, 391
Sfr274I	CTCGAG	1 cut(s)	141
SlaI	CTCGAG	1 cut(s)	141
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	4 cut(s)	156, 267, 340, 380
SsiI	CCGC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	88, 247, 349
TaiI	ACGT	3 cut(s)	130, 278, 391
TaqI	TCGA	3 cut(s)	142, 242, 393
TasI	AATT	4 cut(s)	156, 267, 340, 380
Tru1I	TTAA	2 cut(s)	99, 279
Tru9I	TTAA	2 cut(s)	99, 279
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	195, 245
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	380
XhoI	CTCGAG	1 cut(s)	141
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.