Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

3971054 .. 3973487

Gene Structure 2434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGAGAAATTGCTTGGATAAAAGACACTTTACCAATAGAACCATGGCAAATTGGTGGTCCAGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGTGATAACTGATGTTGAGCCATGGCTGCTTCATGACTTTGATGCGGACTTCTATGGGGAGGAATTGCATCTTATTATAGTTGGCTACATACGGCCTGAGGCCAATTTTCCATCTCTTGAGAGTTTGATCGAAAAGATCCATGAGGACCGGACAATTGCAGAGGAAGCTCTTGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

108

Amino Acids

12.38

Weight (kDa)

4.55

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavokinase	PF01687	42 - 93	1.7e-11	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	3 cut(s)	97, 110, 241
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	2 cut(s)	96, 296
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	3 cut(s)	97, 110, 241
AoxI	GGCC	2 cut(s)	203, 210
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspS9I	GGNCC	2 cut(s)	59, 256
AvaII	GGWCC	2 cut(s)	59, 256
AxyI	CCTNAGG	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	123
BccI	CCATC	1 cut(s)	229
BceAI	ACGGC	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmcAI	AGTACT	1 cut(s)	96
Bme18I	GGWCC	2 cut(s)	59, 256
BmgT120I	GGNCC	2 cut(s)	59, 256
BmiI	GGNNCC	1 cut(s)	104
BmsI	GCATC	2 cut(s)	142, 187
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	44, 131
BsaWI	WCCGGW	1 cut(s)	258
Bse1I	ACTGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	207
BseDI	CCNNGG	2 cut(s)	44, 131
BseGI	GGATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	123
BshFI	GGCC	2 cut(s)	205, 212
BsiSI	CCGG	1 cut(s)	259
BsnI	GGCC	2 cut(s)	205, 212
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp143I	GATC	4 cut(s)	102, 237, 246, 283
Bsp19I	CCATGG	2 cut(s)	44, 131
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	2 cut(s)	205, 212
BspCNI	CTCAG	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	3 cut(s)	97, 110, 241
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	44, 131
BssMI	GATC	4 cut(s)	102, 237, 246, 283
BssT1I	CCWWGG	2 cut(s)	44, 131
Bst4CI	ACNGT	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	207
BstDSI	CCRYGG	2 cut(s)	44, 131
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	4 cut(s)	105, 240, 249, 286
BstMBI	GATC	4 cut(s)	102, 237, 246, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 275
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	123
BstX2I	RGATCY	2 cut(s)	102, 246
BstYI	RGATCY	2 cut(s)	102, 246
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	205, 212
BtgI	CCRYGG	2 cut(s)	44, 131
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	117
CciI	TCATGA	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	59, 256
Csp6I	GTAC	2 cut(s)	95, 295
CviAII	CATG	4 cut(s)	45, 132, 143, 251
CviJI	RGCY	7 cut(s)	87, 130, 136, 195, 205, 212, 278
CviKI_1	RGCY	7 cut(s)	87, 130, 136, 195, 205, 212, 278
CviQI	GTAC	2 cut(s)	95, 295
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	4 cut(s)	104, 239, 248, 285
DpnII	GATC	4 cut(s)	102, 237, 246, 283
Eco130I	CCWWGG	2 cut(s)	44, 131
Eco24I	GRGCYC	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	59, 256
Eco81I	CCTNAGG	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	44, 131
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	2 cut(s)	44, 131
FaeI	CATG	4 cut(s)	48, 135, 146, 254
FaiI	YATR	8 cut(s)	46, 133, 144, 165, 188, 200, 252, 319
FatI	CATG	4 cut(s)	44, 131, 142, 250
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	205, 212
HapII	CCGG	1 cut(s)	259
Hin1II	CATG	4 cut(s)	48, 135, 146, 254
HpaII	CCGG	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	143, 227, 281
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	178, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 275
HpyF3I	CTNAG	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	48, 135, 146, 254
Kzo9I	GATC	4 cut(s)	102, 237, 246, 283
LpnPI	CCDG	3 cut(s)	75, 219, 272
Lsp1109I	GCAGC	1 cut(s)	123
LweI	GCATC	2 cut(s)	142, 187
MalI	GATC	4 cut(s)	104, 239, 248, 285
MboI	GATC	4 cut(s)	102, 237, 246, 283
MboII	GAAGA	1 cut(s)	278
MfeI	CAATTG	1 cut(s)	264
MflI	RGATCY	2 cut(s)	102, 246
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	6 cut(s)	9, 51, 173, 214, 264, 302
MnlI	CCTC	4 cut(s)	163, 202, 247, 265
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	259
MunI	CAATTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	136, 275
NcoI	CCATGG	2 cut(s)	44, 131
NdeII	GATC	4 cut(s)	102, 237, 246, 283
NlaIII	CATG	4 cut(s)	48, 135, 146, 254
NlaIV	GGNNCC	1 cut(s)	104
PagI	TCATGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	2 cut(s)	59, 256
PsuI	RGATCY	2 cut(s)	102, 246
RsaI	GTAC	2 cut(s)	96, 296
RsaNI	GTAC	2 cut(s)	95, 295
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	4 cut(s)	102, 237, 246, 283
Sau96I	GGNCC	2 cut(s)	59, 256
ScaI	AGTACT	1 cut(s)	96
SduI	GDGCHC	1 cut(s)	89
SetI	ASST	1 cut(s)	280
SfaNI	GCATC	2 cut(s)	142, 187
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	59, 256
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	6 cut(s)	9, 51, 173, 214, 264, 302
SsiI	CCGC	1 cut(s)	155
StyI	CCWWGG	2 cut(s)	44, 131
TaaI	ACNGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	240
TasI	AATT	6 cut(s)	9, 51, 173, 214, 264, 302
TatI	WGTACW	2 cut(s)	94, 294
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	2 cut(s)	59, 256
XapI	RAATTY	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.