Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Forward (+)

11230598 .. 11236096

Gene Structure 5499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G138200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGATTAGGAAGATGTCAACTGCACAGCCTTTAAAGAAATTAGTGTCCTGTGTTATCCTTGATTTGGATGGTACACTACTTAACACAGATGGAATTGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAGTATGGAAAGCAGTGGGATGGACGGGAAATTAAAAAAATTGTTGGAAAAACACCACTTGAAGCTGCAAGTGCTGTTGTTGAAGATTATGAGCTATCTTGTACAACGAGTGAATTGCTTTCAGAGATTGCCCCCATGTTCTCCAATCAGTGGTGCAACATCAAAGCACTTCCAGGTGCCAATCGGTTAATTAAACATTTGAGTGGTCATAGAGTGCCAATGGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAATTTCTTACCATCAGGCACTTTTTGCTTATTGTATTTCATATGCAGGCTGGAAGGAATCCTTTTCTGTCATCATTGGTGGTGATGAAGTAAGACTGGGGAAGCCTTCTCCGGAAATATTCCTTGAAGTTGCTAAAAGGCTTAATGTCGACCCTTCCAGCTGCCTTGTGATTGAAGATTCTCTACCAGGTGTTACAGCTGGAAGGGCTGCTGGTATGGAGGTGGTTGCTGTACCCTCCATCCCAAAGCAGCCCCACCTTTATACTTTAGCGGACGAGGTGATCAACTCTCTACTTGATTTGCGACCTGAAAAGTGGGGCCTACCTCCTTTCCAAGATTGGATAAAGGATACTTTACCACTAGAACCTTGGCACATTGGTGGTCCTGTCGTTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGCTAATTTATCCACAGAAGGATATGGATCTCTTCTTTCAGAACATCCCTCAGGAGTATATTTTGGTTGGGCTGGATTATCTAAACGAGGTGTCTTTAAAATGGTTATGAGTATTGGTTGGAATCCTTATTTCAACAACACTGAAAAAACTATAGAGCCATGGTTGCTTCATAACTTTGATGAGGATTTCTATGGGGAGGAACTGCGTCTTATTATAGTCGGCTACATACGGCCAGAGGCCAATTTCTCATCCCTCCAGAGCTTGATAGAGAAGATTCATCACGACAGAAAAGTTGCAGAGGAAGCTCTTGATCTTCCATTGTTCTCCAAATACAAGGACGACCCATATCTTAAAAGTTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

396

Amino Acids

43.89

Weight (kDa)

6.04

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	1 cut(s)	659
AclWI	GGATC	3 cut(s)	808, 821, 856
AcoI	YGGCCR	1 cut(s)	1052
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	4 cut(s)	73, 229, 621, 807
AfiI	CCNNNNNNNGG	2 cut(s)	64, 276
AgsI	TTSAA	6 cut(s)	188, 209, 360, 515, 563, 955
AjnI	CCWGG	2 cut(s)	298, 574
AleI	CACNNNNGTG	1 cut(s)	765
AluBI	AGCT	7 cut(s)	191, 220, 549, 587, 824, 1083, 1127
AluI	AGCT	7 cut(s)	191, 220, 549, 587, 824, 1083, 1127
AlwI	GGATC	3 cut(s)	808, 821, 856
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	3 cut(s)	706, 1052, 1059
ApeKI	GCWGC	4 cut(s)	191, 549, 596, 637
ApoI	RAATTY	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	706, 770
AsuHPI	GGTGA	2 cut(s)	482, 679
AvaII	GGWCC	1 cut(s)	770
AxyI	CCTNAGG	1 cut(s)	871
BamHI	GGATCC	1 cut(s)	813
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	800
BarI	GAAGNNNNNNTAC	2 cut(s)	555, 587
BbvI	GCAGC	4 cut(s)	178, 536, 583, 649
BccI	CCATC	5 cut(s)	62, 83, 140, 408, 635
BceAI	ACGGC	1 cut(s)	1067
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	2 cut(s)	300, 576
BciVI	GTATCC	1 cut(s)	730
BclI	TGATCA	1 cut(s)	669
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	2 cut(s)	819, 972
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	4 cut(s)	192, 550, 597, 638
BlsI	GCNGC	4 cut(s)	193, 551, 598, 639
BmcAI	AGTACT	1 cut(s)	807
Bme1390I	CCNGG	2 cut(s)	300, 576
Bme18I	GGWCC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	706, 770
BmiI	GGNNCC	3 cut(s)	304, 707, 815
BmrFI	CCNGG	2 cut(s)	300, 576
BmrI	ACTGGG	1 cut(s)	494
BmuI	ACTGGG	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	1061
BsaBI	GATNNNNATC	1 cut(s)	847
BsaJI	CCNNGG	3 cut(s)	368, 755, 980
BsaWI	WCCGGW	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 276
Bse1I	ACTGG	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	871
Bse8I	GATNNNNATC	1 cut(s)	847
BseAI	TCCGGA	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	300, 576
BseDI	CCNNGG	3 cut(s)	368, 755, 980
BseGI	GGATG	5 cut(s)	73, 151, 627, 865, 1070
BseJI	GATNNNNATC	1 cut(s)	847
BseLI	CCNNNNNNNGG	2 cut(s)	64, 276
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	1 cut(s)	489
BseXI	GCAGC	4 cut(s)	178, 536, 583, 649
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	3 cut(s)	708, 1054, 1061
BshNI	GGYRCC	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	64, 276
BsnI	GGCC	3 cut(s)	708, 1054, 1061
Bsp1286I	GDGCHC	1 cut(s)	800
Bsp13I	TCCGGA	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	227
Bsp143I	GATC	4 cut(s)	669, 813, 848, 1132
Bsp19I	CCATGG	1 cut(s)	980
BspACI	CCGC	1 cut(s)	659
BspANI	GGCC	3 cut(s)	708, 1054, 1061
BspCNI	CTCAG	1 cut(s)	884
BspEI	TCCGGA	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	304, 707, 815
BspPI	GGATC	3 cut(s)	808, 821, 856
BspT107I	GGYRCC	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	3 cut(s)	368, 755, 980
BssMI	GATC	4 cut(s)	669, 813, 848, 1132
BssT1I	CCWWGG	3 cut(s)	368, 755, 980
Bst2UI	CCWGG	2 cut(s)	300, 576
Bst6I	CTCTTC	1 cut(s)	858
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	1 cut(s)	871
BstDSI	CCRYGG	1 cut(s)	980
BstF5I	GGATG	5 cut(s)	73, 151, 627, 865, 1070
BstKTI	GATC	4 cut(s)	672, 816, 851, 1135
BstMBI	GATC	4 cut(s)	669, 813, 848, 1132
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 413, 593, 985, 1124
BstNI	CCWGG	2 cut(s)	300, 576
BstSCI	CCNGG	2 cut(s)	298, 574
BstSFI	CTRYAG	2 cut(s)	819, 972
BstV1I	GCAGC	4 cut(s)	178, 536, 583, 649
BstX2I	RGATCY	2 cut(s)	813, 848
BstYI	RGATCY	2 cut(s)	813, 848
Bsu36I	CCTNAGG	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	708, 1054, 1061
BtgI	CCRYGG	1 cut(s)	980
BtsCI	GGATG	5 cut(s)	73, 151, 627, 865, 1070
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	3 cut(s)	146, 281, 960
Cac8I	GCNNGC	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	706, 770
CseI	GACGC	1 cut(s)	1016
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	4 cut(s)	72, 228, 620, 806
CviAII	CATG	2 cut(s)	262, 981
CviQI	GTAC	4 cut(s)	72, 228, 620, 806
DdeI	CTNAG	1 cut(s)	871
DpnI	GATC	4 cut(s)	671, 815, 850, 1134
DpnII	GATC	4 cut(s)	669, 813, 848, 1132
DraI	TTTAAA	2 cut(s)	33, 919
EaeI	YGGCCR	1 cut(s)	1052
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco130I	CCWWGG	3 cut(s)	368, 755, 980
Eco24I	GRGCYC	1 cut(s)	800
Eco47I	GGWCC	1 cut(s)	770
Eco81I	CCTNAGG	1 cut(s)	871
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	2 cut(s)	298, 574
EcoT14I	CCWWGG	3 cut(s)	368, 755, 980
EcoT38I	GRGCYC	1 cut(s)	800
ErhI	CCWWGG	3 cut(s)	368, 755, 980
FaeI	CATG	2 cut(s)	265, 984
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FatI	CATG	2 cut(s)	261, 980
FauNDI	CATATG	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	669
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	4 cut(s)	192, 550, 597, 638
FokI	GGATG	5 cut(s)	80, 158, 614, 852, 1057
FriOI	GRGCYC	1 cut(s)	800
Fsp4HI	GCNGC	4 cut(s)	192, 550, 597, 638
FspBI	CTAG	1 cut(s)	749
GluI	GCNGC	4 cut(s)	192, 550, 597, 638
GsuI	CTGGAG	1 cut(s)	1061
HaeIII	GGCC	3 cut(s)	708, 1054, 1061
HapII	CCGG	1 cut(s)	500
HgaI	GACGC	1 cut(s)	1016
Hin1II	CATG	2 cut(s)	265, 984
HincII	GTYRAC	2 cut(s)	18, 538
HindII	GTYRAC	2 cut(s)	18, 538
HinfI	GANTC	4 cut(s)	446, 566, 943, 1096
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	2 cut(s)	482, 679
Hpy166II	GTNNAC	3 cut(s)	18, 74, 538
Hpy188I	TCNGA	2 cut(s)	250, 862
Hpy188III	TCNNGA	5 cut(s)	500, 873, 1078, 1103, 1130
Hpy8I	GTNNAC	3 cut(s)	18, 74, 538
HpyAV	CCTTC	5 cut(s)	436, 504, 552, 585, 833
HpyCH4V	TGCA	5 cut(s)	23, 194, 282, 434, 1118
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 413, 593, 985, 1124
HpyF3I	CTNAG	1 cut(s)	871
Hsp92II	CATG	2 cut(s)	265, 984
Kpn2I	TCCGGA	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	669
Kzo9I	GATC	4 cut(s)	669, 813, 848, 1132
Lsp1109I	GCAGC	4 cut(s)	178, 536, 583, 649
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	1 cut(s)	749
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	4 cut(s)	671, 815, 850, 1134
MboI	GATC	4 cut(s)	669, 813, 848, 1132
MboII	GAAGA	6 cut(s)	22, 221, 575, 845, 1105, 1127
MflI	RGATCY	2 cut(s)	813, 848
MhlI	GDGCHC	1 cut(s)	800
MluCI	AATT	9 cut(s)	38, 93, 156, 165, 239, 315, 390, 826, 1063
MmeI	TCCRAC	2 cut(s)	151, 920
MroI	TCCGGA	1 cut(s)	499
MslI	CAYNNNNRTG	2 cut(s)	327, 765
MspA1I	CMGCKG	2 cut(s)	549, 587
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	2 cut(s)	300, 576
MvaI	CCWGG	2 cut(s)	300, 576
MwoI	GCNNNNNNNGC	5 cut(s)	197, 413, 593, 985, 1124
NcoI	CCATGG	1 cut(s)	980
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	4 cut(s)	669, 813, 848, 1132
NlaIII	CATG	2 cut(s)	265, 984
NlaIV	GGNNCC	3 cut(s)	304, 707, 815
OliI	CACNNNNGTG	1 cut(s)	765
PacI	TTAATTAA	1 cut(s)	318
PfeI	GAWTC	4 cut(s)	446, 566, 943, 1096
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	193, 551, 598, 639
Psp6I	CCWGG	2 cut(s)	298, 574
PspGI	CCWGG	2 cut(s)	298, 574
PspN4I	GGNNCC	3 cut(s)	304, 707, 815
PspPI	GGNCC	2 cut(s)	706, 770
PsuI	RGATCY	2 cut(s)	813, 848
PvuII	CAGCTG	2 cut(s)	549, 587
RsaI	GTAC	4 cut(s)	73, 229, 621, 807
RsaNI	GTAC	4 cut(s)	72, 228, 620, 806
RseI	CAYNNNNRTG	2 cut(s)	327, 765
SalI	GTCGAC	1 cut(s)	536
SatI	GCNGC	4 cut(s)	192, 550, 597, 638
Sau3AI	GATC	4 cut(s)	669, 813, 848, 1132
Sau96I	GGNCC	2 cut(s)	706, 770
ScaI	AGTACT	1 cut(s)	807
ScrFI	CCNGG	2 cut(s)	300, 576
SduI	GDGCHC	1 cut(s)	800
SexAI	ACCWGGT	1 cut(s)	574
SfcI	CTRYAG	2 cut(s)	819, 972
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	2 cut(s)	327, 765
Sse9I	AATT	9 cut(s)	38, 93, 156, 165, 239, 315, 390, 826, 1063
SsiI	CCGC	1 cut(s)	659
SspI	AATATT	1 cut(s)	507
SspMI	CTAG	1 cut(s)	749
StyD4I	CCNGG	2 cut(s)	298, 574
StyI	CCWWGG	3 cut(s)	368, 755, 980
TaqI	TCGA	1 cut(s)	537
TasI	AATT	9 cut(s)	38, 93, 156, 165, 239, 315, 390, 826, 1063
TatI	WGTACW	2 cut(s)	227, 805
TfiI	GAWTC	4 cut(s)	446, 566, 943, 1096
TscAI	CASTG	3 cut(s)	146, 281, 967
TseI	GCWGC	4 cut(s)	191, 549, 596, 637
TspDTI	ATGAA	4 cut(s)	417, 489, 980, 1088
TspRI	CASTG	3 cut(s)	146, 281, 967
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	537
XspI	CTAG	1 cut(s)	749
ZrmI	AGTACT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.