Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

5850555 .. 5856793

Gene Structure 6239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G053000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGATTAAGAAGATGTCAACTGCACAACCTTTGAAGAAAATAGTGTCCTGTGTTATCCTCGATTTGGATGGTACACTACTTAACACAGATGGCATTGTAAATGATGTTTTAAGAGTTTATTTGGGCAAGTATGGAATGCAGTGGGATGGACGGGAAGTTCAAAAAATAGTTGGAAAAACACCACTTGAAGCTGCAAGTGCTGTTGTTGAAGCTTATGGGCTCTCTTGCACAACGAGTGAATTACTTTCAGAGATTACCCCCATGTTCTCTAATCAGTGGTGCAACATCAAAGCACTTCCAGGTGCCAATCGATTAATTAAACATTTGAGTGGTCATAGAGTGTCAATGGCAATGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAATTTCTTTTCATCAGGGCTGGAAGGAATCCTTTTCTGTCATCATTGGTGGTGATGAAGCAAGATTGGGGAAGCCTTCTCCGGAAATATTCCTTGAAGTTGCTAAAAGGCTTAATGTTGACCCTTCCAGCTGCCTTGTCATTGAAGATTCTCTACCAGGTGTTACAGCTGGAAAGGCTGCTGGTATGGAGGTGGTTGCTGTACCCTCCATCCCAAAGCAGTCCCATCTTTATACTTCAGCGGATGAGGTGATCAACTCACTACTTGATTTGCAACCTGAAAAGTGGGGCCTACCTCCTTTCCAAGATTGGATAAAAGATACTTTACCACTAGAACCTTGGCACATTGGTGGTCCTGTCGTTAAGGGATTCGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGCTAATTTATCCACAGAAGGATATGGATCTCTTCTTTCAGAACATCCCTCGGGAGTATATTTTGGTTGGGCTGGATTATCTAAACGAGGTGTCTTTAAAATGGTCATGAGTGTTGGTTGGAATCCTTATTTCAACAACACTGAAAAGACTATAGAGCCATGGTTGCTTCATGACTTTGATGAGGATTTCTATGGGGAGGAACTGCGTCTTATTATAGTCGGCTACATACGGCCAGAGGCCAATTTCTCATCCCTCCAGAGCTTGATAGAGAAGATTCATCATGACAGAAAAGTTGCAGAGGAAGCTCTTGATCTTCCATTGTTCTCCAAATACAAGGACGACCCATATATTAAAAGTTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

386

Amino Acids

42.55

Weight (kDa)

5.78

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	3 cut(s)	778, 791, 826
AcoI	YGGCCR	1 cut(s)	1022
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	3 cut(s)	73, 591, 777
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	8 cut(s)	34, 161, 188, 209, 360, 485, 533, 925
AjnI	CCWGG	2 cut(s)	298, 544
AleI	CACNNNNGTG	1 cut(s)	735
AloI	GAACNNNNNNTCC	2 cut(s)	141, 173
AluBI	AGCT	7 cut(s)	191, 212, 519, 557, 794, 1053, 1097
AluI	AGCT	7 cut(s)	191, 212, 519, 557, 794, 1053, 1097
AlwI	GGATC	3 cut(s)	778, 791, 826
Ama87I	CYCGRG	1 cut(s)	841
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	3 cut(s)	676, 1022, 1029
ApeKI	GCWGC	3 cut(s)	191, 519, 566
ApoI	RAATTY	1 cut(s)	390
AseI	ATTAAT	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	676, 740
AsuHPI	GGTGA	2 cut(s)	452, 649
AvaI	CYCGRG	1 cut(s)	841
AvaII	GGWCC	1 cut(s)	740
BamHI	GGATCC	1 cut(s)	783
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	2 cut(s)	222, 770
BarI	GAAGNNNNNNTAC	2 cut(s)	525, 557
BbvI	GCAGC	3 cut(s)	178, 506, 553
BccI	CCATC	5 cut(s)	62, 83, 140, 605, 621
BceAI	ACGGC	1 cut(s)	1037
BciT130I	CCWGG	2 cut(s)	300, 546
BclI	TGATCA	1 cut(s)	639
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	2 cut(s)	789, 942
BisI	GCNGC	3 cut(s)	192, 520, 567
BlsI	GCNGC	3 cut(s)	193, 521, 568
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	2 cut(s)	300, 546
Bme18I	GGWCC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	841
BmgT120I	GGNCC	2 cut(s)	676, 740
BmiI	GGNNCC	3 cut(s)	304, 677, 785
BmrFI	CCNGG	2 cut(s)	300, 546
BpmI	CTGGAG	1 cut(s)	1031
Bsa29I	ATCGAT	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	817
BsaJI	CCNNGG	4 cut(s)	368, 725, 840, 950
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	817
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	300, 546
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	4 cut(s)	368, 725, 840, 950
BseGI	GGATG	6 cut(s)	73, 151, 597, 637, 835, 1040
BseJI	GATNNNNATC	1 cut(s)	817
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	178, 506, 553
BsgI	GTGCAG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	763
BshFI	GGCC	3 cut(s)	678, 1024, 1031
BshNI	GGYRCC	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	310
BsiEI	CGRYCG	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	841
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	595
BsmI	GAATGC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	678, 1024, 1031
BsoBI	CYCGRG	1 cut(s)	841
Bsp1286I	GDGCHC	2 cut(s)	222, 770
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	4 cut(s)	639, 783, 818, 1102
Bsp19I	CCATGG	1 cut(s)	950
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	3 cut(s)	678, 1024, 1031
BspDI	ATCGAT	1 cut(s)	310
BspEI	TCCGGA	1 cut(s)	469
BspHI	TCATGA	3 cut(s)	897, 961, 1072
BspLI	GGNNCC	3 cut(s)	304, 677, 785
BspPI	GGATC	3 cut(s)	778, 791, 826
BspT107I	GGYRCC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	4 cut(s)	368, 725, 840, 950
BssMI	GATC	4 cut(s)	639, 783, 818, 1102
BssT1I	CCWWGG	3 cut(s)	368, 725, 950
Bst2UI	CCWGG	2 cut(s)	300, 546
Bst6I	CTCTTC	1 cut(s)	828
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	6 cut(s)	73, 151, 597, 637, 835, 1040
BstKTI	GATC	4 cut(s)	642, 786, 821, 1105
BstMBI	GATC	4 cut(s)	639, 783, 818, 1102
BstMCI	CGRYCG	1 cut(s)	763
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 563, 955, 1094
BstNI	CCWGG	2 cut(s)	300, 546
BstSCI	CCNGG	2 cut(s)	298, 544
BstSFI	CTRYAG	2 cut(s)	789, 942
BstV1I	GCAGC	3 cut(s)	178, 506, 553
BstX2I	RGATCY	2 cut(s)	783, 818
BstYI	RGATCY	2 cut(s)	783, 818
Bsu15I	ATCGAT	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	678, 1024, 1031
BsuTUI	ATCGAT	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	950
BtsCI	GGATG	6 cut(s)	73, 151, 597, 637, 835, 1040
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	3 cut(s)	146, 281, 930
CciI	TCATGA	3 cut(s)	897, 961, 1072
Cfr13I	GGNCC	2 cut(s)	676, 740
ClaI	ATCGAT	1 cut(s)	310
CseI	GACGC	1 cut(s)	986
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	3 cut(s)	72, 590, 776
CviAII	CATG	5 cut(s)	262, 898, 951, 962, 1073
CviQI	GTAC	3 cut(s)	72, 590, 776
DpnI	GATC	4 cut(s)	641, 785, 820, 1104
DpnII	GATC	4 cut(s)	639, 783, 818, 1102
DraI	TTTAAA	1 cut(s)	889
EaeI	YGGCCR	1 cut(s)	1022
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco130I	CCWWGG	3 cut(s)	368, 725, 950
Eco24I	GRGCYC	2 cut(s)	222, 770
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	841
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	2 cut(s)	298, 544
EcoT14I	CCWWGG	3 cut(s)	368, 725, 950
EcoT38I	GRGCYC	2 cut(s)	222, 770
ErhI	CCWWGG	3 cut(s)	368, 725, 950
FaeI	CATG	5 cut(s)	265, 901, 954, 965, 1076
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	5 cut(s)	261, 897, 950, 961, 1072
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	3 cut(s)	192, 520, 567
FokI	GGATG	6 cut(s)	80, 158, 584, 644, 822, 1027
FriOI	GRGCYC	2 cut(s)	222, 770
Fsp4HI	GCNGC	3 cut(s)	192, 520, 567
FspBI	CTAG	1 cut(s)	719
GluI	GCNGC	3 cut(s)	192, 520, 567
GsuI	CTGGAG	1 cut(s)	1031
HaeIII	GGCC	3 cut(s)	678, 1024, 1031
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	986
Hin1II	CATG	5 cut(s)	265, 901, 954, 965, 1076
HincII	GTYRAC	2 cut(s)	18, 508
HindII	GTYRAC	2 cut(s)	18, 508
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	5 cut(s)	416, 536, 756, 913, 1066
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	2 cut(s)	452, 649
Hpy166II	GTNNAC	3 cut(s)	18, 74, 508
Hpy188I	TCNGA	2 cut(s)	250, 832
Hpy188III	TCNNGA	7 cut(s)	470, 843, 898, 962, 1048, 1073, 1100
Hpy8I	GTNNAC	3 cut(s)	18, 74, 508
HpyAV	CCTTC	4 cut(s)	406, 474, 522, 803
HpyCH4V	TGCA	7 cut(s)	23, 139, 194, 228, 282, 661, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 563, 955, 1094
Hsp92II	CATG	5 cut(s)	265, 901, 954, 965, 1076
Kpn2I	TCCGGA	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	639, 783, 818, 1102
Lsp1109I	GCAGC	3 cut(s)	178, 506, 553
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	1 cut(s)	719
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	4 cut(s)	641, 785, 820, 1104
MboI	GATC	4 cut(s)	639, 783, 818, 1102
MboII	GAAGA	6 cut(s)	22, 46, 545, 815, 1075, 1097
MflI	RGATCY	2 cut(s)	783, 818
MhlI	GDGCHC	2 cut(s)	222, 770
MluCI	AATT	5 cut(s)	239, 315, 390, 796, 1033
MmeI	TCCRAC	2 cut(s)	151, 890
MroI	TCCGGA	1 cut(s)	469
MseI	TTAA	9 cut(s)	6, 81, 110, 314, 318, 501, 750, 888, 1143
MslI	CAYNNNNRTG	2 cut(s)	327, 735
MspA1I	CMGCKG	3 cut(s)	519, 557, 629
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	300, 546
Mva1269I	GAATGC	1 cut(s)	141
MvaI	CCWGG	2 cut(s)	300, 546
MwoI	GCNNNNNNNGC	4 cut(s)	197, 563, 955, 1094
NcoI	CCATGG	1 cut(s)	950
NdeII	GATC	4 cut(s)	639, 783, 818, 1102
NlaIII	CATG	5 cut(s)	265, 901, 954, 965, 1076
NlaIV	GGNNCC	3 cut(s)	304, 677, 785
OliI	CACNNNNGTG	1 cut(s)	735
PacI	TTAATTAA	1 cut(s)	318
PagI	TCATGA	3 cut(s)	897, 961, 1072
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	5 cut(s)	416, 536, 756, 913, 1066
PkrI	GCNGC	3 cut(s)	193, 521, 568
PshBI	ATTAAT	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	298, 544
PspGI	CCWGG	2 cut(s)	298, 544
PspN4I	GGNNCC	3 cut(s)	304, 677, 785
PspPI	GGNCC	2 cut(s)	676, 740
PsuI	RGATCY	2 cut(s)	783, 818
PvuII	CAGCTG	2 cut(s)	519, 557
RsaI	GTAC	3 cut(s)	73, 591, 777
RsaNI	GTAC	3 cut(s)	72, 590, 776
RseI	CAYNNNNRTG	2 cut(s)	327, 735
SaqAI	TTAA	9 cut(s)	6, 81, 110, 314, 318, 501, 750, 888, 1143
SatI	GCNGC	3 cut(s)	192, 520, 567
Sau3AI	GATC	4 cut(s)	639, 783, 818, 1102
Sau96I	GGNCC	2 cut(s)	676, 740
ScaI	AGTACT	1 cut(s)	777
ScrFI	CCNGG	2 cut(s)	300, 546
SduI	GDGCHC	2 cut(s)	222, 770
SexAI	ACCWGGT	1 cut(s)	544
SfcI	CTRYAG	2 cut(s)	789, 942
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	327, 735
Sse9I	AATT	5 cut(s)	239, 315, 390, 796, 1033
SsiI	CCGC	1 cut(s)	629
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	1 cut(s)	719
StyD4I	CCNGG	2 cut(s)	298, 544
StyI	CCWWGG	3 cut(s)	368, 725, 950
TaqI	TCGA	2 cut(s)	60, 310
TaqII	GACCGA	1 cut(s)	749
TasI	AATT	5 cut(s)	239, 315, 390, 796, 1033
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	5 cut(s)	416, 536, 756, 913, 1066
Tru1I	TTAA	9 cut(s)	6, 81, 110, 314, 318, 501, 750, 888, 1143
Tru9I	TTAA	9 cut(s)	6, 81, 110, 314, 318, 501, 750, 888, 1143
TscAI	CASTG	3 cut(s)	146, 281, 937
TseI	GCWGC	3 cut(s)	191, 519, 566
TspDTI	ATGAA	4 cut(s)	389, 459, 950, 1058
TspRI	CASTG	3 cut(s)	146, 281, 937
VpaK11BI	GGWCC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	314
XapI	RAATTY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XspI	CTAG	1 cut(s)	719
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.