Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Forward (+)

45108170 .. 45109535

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGGCCCATGGCTGCTTCATGACTTTGACGACGACTTCTACGGGGAGGAATTGCATCGTATCATAGTTGGCTACATACGGCCTGAGGCCAATTTCCCATCTCTCGAGAGATTGATCGAAAAGATCCATGAGGACAGGAAAATTGCAGAGGAAGCTCTTGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAAGACCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

71

Amino Acids

8.53

Weight (kDa)

4.88

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavokinase	PF01687	6 - 52	7.9e-11	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	179
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	3 cut(s)	4, 80, 87
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	4, 5
AvaI	CYCGRG	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	84
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	8
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	8
Bse21I	CCTNAGG	1 cut(s)	84
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	3 cut(s)	6, 82, 89
BsiHKCI	CYCGRG	1 cut(s)	104
BsnI	GGCC	3 cut(s)	6, 82, 89
BsoBI	CYCGRG	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	114, 123, 160
Bsp19I	CCATGG	1 cut(s)	8
BspANI	GGCC	3 cut(s)	6, 82, 89
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	114, 123, 160
BssT1I	CCWWGG	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	3 cut(s)	117, 126, 163
BstMBI	GATC	3 cut(s)	114, 123, 160
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	6, 82, 89
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	193
CciI	TCATGA	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	4, 5
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	3 cut(s)	9, 20, 128
CviJI	RGCY	6 cut(s)	6, 13, 72, 82, 89, 155
CviKI_1	RGCY	6 cut(s)	6, 13, 72, 82, 89, 155
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	3 cut(s)	116, 125, 162
DpnII	GATC	3 cut(s)	114, 123, 160
Eco130I	CCWWGG	1 cut(s)	8
Eco24I	GRGCYC	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	8
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	8
FaeI	CATG	3 cut(s)	12, 23, 131
FaiI	YATR	7 cut(s)	10, 21, 65, 77, 129, 196, 214
FatI	CATG	3 cut(s)	8, 19, 127
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	6, 82, 89
Hin1II	CATG	3 cut(s)	12, 23, 131
Hpy188III	TCNNGA	4 cut(s)	20, 104, 106, 158
Hpy99I	CGWCG	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	55, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	12, 23, 131
Kzo9I	GATC	3 cut(s)	114, 123, 160
LpnPI	CCDG	2 cut(s)	96, 121
LweI	GCATC	1 cut(s)	64
MalI	GATC	3 cut(s)	116, 125, 162
MboI	GATC	3 cut(s)	114, 123, 160
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	50, 91, 141, 179
MnlI	CCTC	4 cut(s)	40, 79, 124, 142
MseI	TTAA	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	8
NdeII	GATC	3 cut(s)	114, 123, 160
NlaIII	CATG	3 cut(s)	12, 23, 131
NlaIV	GGNNCC	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	6
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	3 cut(s)	114, 123, 160
Sau96I	GGNCC	2 cut(s)	4, 5
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	2 cut(s)	157, 211
SfaNI	GCATC	1 cut(s)	64
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	50, 91, 141, 179
StyI	CCWWGG	1 cut(s)	8
TaqI	TCGA	2 cut(s)	105, 117
TasI	AATT	4 cut(s)	50, 91, 141, 179
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	8
XapI	RAATTY	1 cut(s)	179
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.