Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

4014524 .. 4015895

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28759

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCTATATTGTCTTGTTTGCCTCCAAAGTTGCATTGTTAAATCCCACAAAATTATTCTTGCTACAGAAAGATTGGGTTTTCTAATTTTGTTTGCAAGAACTGCTTTGGCAATGATAATTATATGCCTGATGTTCCTGATGATGCCAGGTGTGACAGCTGGTAAGGCTGCTGGAATGGAGGTAGTTGCTGTGCCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACCTGACTTGCATCCTGAAAAGTGGGGCCTACCTCATTTCAAAGATTGGATGAAAGACATAGAACCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGCTCGTACTGTGAATATGCTTGGTGTCCTTAGAACATCCCTCGGGGTATATTTCGGTTGGGCTGGATTACCGACGCGAGGTGTCTTTAAAATGATCATGAGTATTGGTTGGATTCCTTATTTCAACAACACGGAAAAGACTGTAGCCAATTTCCCAACTCTCGAGAGCTTGATCGAAAAGATCCATGAGGACCGGAAAATTGCAGAGGAAGCTCTCGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAAGCCCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

218

Amino Acids

24.31

Weight (kDa)

8.83

Isoelectric Point (pI)

42.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavokinase	PF01687	105 - 176	5.3e-13	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	460
AclWI	GGATC	3 cut(s)	370, 383, 559
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	3 cut(s)	369, 391, 614
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	3 cut(s)	292, 508, 625
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	158, 386, 552, 596
AluI	AGCT	4 cut(s)	158, 386, 552, 596
AlwI	GGATC	3 cut(s)	370, 383, 559
Ama87I	CYCGRG	2 cut(s)	425, 545
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	316, 348
AspS9I	GGNCC	3 cut(s)	277, 332, 574
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	2 cut(s)	425, 545
AvaII	GGWCC	2 cut(s)	332, 574
BaeGI	GKGCMC	1 cut(s)	195
BamHI	GGATCC	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	147
BclI	TGATCA	2 cut(s)	240, 477
BfmI	CTRYAG	3 cut(s)	63, 381, 525
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	369
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	2 cut(s)	332, 574
BmeT110I	CYCGRG	2 cut(s)	425, 545
BmgT120I	GGNCC	3 cut(s)	277, 332, 574
BmiI	GGNNCC	2 cut(s)	278, 377
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	2 cut(s)	132, 271
BsaJI	CCNNGG	2 cut(s)	317, 424
BsaWI	WCCGGW	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	317, 424
BseGI	GGATG	4 cut(s)	262, 306, 419, 634
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	1 cut(s)	279
BsiHKCI	CYCGRG	2 cut(s)	425, 545
BsiSI	CCGG	1 cut(s)	577
BslI	CCNNNNNNNGG	1 cut(s)	461
BsnI	GGCC	1 cut(s)	279
BsoBI	CYCGRG	2 cut(s)	425, 545
Bsp1286I	GDGCHC	2 cut(s)	195, 362
Bsp143I	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
BspANI	GGCC	1 cut(s)	279
BspFNI	CGCG	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	278, 377
BspPI	GGATC	3 cut(s)	370, 383, 559
BsrDI	GCAATG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	317, 424
BssMI	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	394, 526
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	413
BstF5I	GGATG	4 cut(s)	262, 306, 419, 634
BstFNI	CGCG	1 cut(s)	460
BstKTI	GATC	6 cut(s)	243, 378, 480, 558, 567, 604
BstMBI	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 164, 199, 593
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	3 cut(s)	63, 381, 525
BstSLI	GKGCMC	1 cut(s)	195
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	375, 564
BstYI	RGATCY	2 cut(s)	375, 564
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	4 cut(s)	262, 306, 419, 634
CciI	TCATGA	1 cut(s)	480
Cfr13I	GGNCC	3 cut(s)	277, 332, 574
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	368, 390, 613
CviAII	CATG	3 cut(s)	481, 569, 654
CviQI	GTAC	3 cut(s)	368, 390, 613
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	6 cut(s)	242, 377, 479, 557, 566, 603
DpnII	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
DraI	TTTAAA	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	332, 574
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	2 cut(s)	425, 545
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	3 cut(s)	484, 572, 657
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	3 cut(s)	480, 568, 653
FbaI	TGATCA	2 cut(s)	240, 477
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	4 cut(s)	249, 313, 406, 641
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	1 cut(s)	577
HgaI	GACGC	1 cut(s)	466
Hin1II	CATG	3 cut(s)	484, 572, 657
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	577
HphI	GGTGA	1 cut(s)	250
Hpy188III	TCNNGA	6 cut(s)	136, 266, 481, 545, 547, 599
Hpy99I	CGWCG	1 cut(s)	460
HpyCH4III	ACNGT	2 cut(s)	394, 526
HpyCH4V	TGCA	4 cut(s)	33, 95, 262, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 164, 199, 593
HpyF3I	CTNAG	1 cut(s)	413
Hsp92II	CATG	3 cut(s)	484, 572, 657
Ksp22I	TGATCA	2 cut(s)	240, 477
Kzo9I	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	132, 271
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	6 cut(s)	242, 377, 479, 557, 566, 603
MboI	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
MboII	GAAGA	1 cut(s)	596
MflI	RGATCY	2 cut(s)	375, 564
MhlI	GDGCHC	2 cut(s)	195, 362
MluCI	AATT	7 cut(s)	51, 84, 117, 324, 532, 582, 620
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	9 cut(s)	32, 172, 205, 229, 294, 434, 455, 565, 583
MseI	TTAA	4 cut(s)	39, 342, 471, 642
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	577
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	4 cut(s)	101, 164, 199, 593
NdeII	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
NlaIII	CATG	3 cut(s)	484, 572, 657
NlaIV	GGNNCC	2 cut(s)	278, 377
NmuCI	GTSAC	1 cut(s)	151
PaeR7I	CTCGAG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	278, 377
PspPI	GGNCC	3 cut(s)	277, 332, 574
PsuI	RGATCY	2 cut(s)	375, 564
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	3 cut(s)	369, 391, 614
RsaNI	GTAC	3 cut(s)	368, 390, 613
SaqAI	TTAA	4 cut(s)	39, 342, 471, 642
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	6 cut(s)	240, 375, 477, 555, 564, 601
Sau96I	GGNCC	3 cut(s)	277, 332, 574
ScaI	AGTACT	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	195, 362
SfaNI	GCATC	2 cut(s)	132, 271
SfcI	CTRYAG	3 cut(s)	63, 381, 525
Sfr274I	CTCGAG	1 cut(s)	545
SinI	GGWCC	2 cut(s)	332, 574
SlaI	CTCGAG	1 cut(s)	545
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	7 cut(s)	51, 84, 117, 324, 532, 582, 620
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	394, 526
TaqI	TCGA	3 cut(s)	546, 558, 600
TasI	AATT	7 cut(s)	51, 84, 117, 324, 532, 582, 620
TatI	WGTACW	2 cut(s)	367, 612
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	4 cut(s)	39, 342, 471, 642
Tru9I	TTAA	4 cut(s)	39, 342, 471, 642
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	530
VpaK11BI	GGWCC	2 cut(s)	332, 574
XapI	RAATTY	1 cut(s)	620
XhoI	CTCGAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.