Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

5128906 .. 5134210

Gene Structure 5305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGTCTTGAAGATGTCCATCGCAGAGCCATTAAAGAAATTAGTTTCATGTGTTATCCTTGATTTGGATGGTACTCTACTACACACAGATGGCATAGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAGTATGGAAAGAAATGGGATGGAAGGGAACTTCAAAAGATAGTTGGAAAAACACCACTCGAAGTTGCAGCTGTTATTGTGGAGGATTATGGGCTATCTTGCACAACGAGTGAATTAATCTCAGAGCTAAACCCAATGTTCTCCACTCATGCCATAGCATTGGCTTCAAACTCTCCGAGGGAAAACATAGAAACCAAAATTTCTTTTCATCGGGGTTGGAAAGAATCCTTCTTAGTCATCACTGGAGGTGACGATCGAATTTTGCATTGTAGATTCCTTCAAGCTGCTAAAAGATTAAATATTGAACCGCCCAGCTGCCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCTGGTAAGGCTGCTGGAATGGAGGTAGTTGCTGTGCCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCGGCAGATGAGGTGATCAACTCTCTACTTGACTTGCATCCTGAAAAGTGGGGCCTACCTCATTTCAAAGATTGGATGAAAGACACTTTACCAATAGAACCTTGGCAAATTGGTGGTCCTGTGACTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGCTAATCTATCCACTGCGCAATATTCAACACTCCTTTCCGAACATCCCTCGAGGGTATATTTCGGTTGGGCTGGATTACCAACGCGAGGTGTCTTTAAAATGGTCATGAGTATTGGTTGGATTCCTTATTTCAACAACACCGGAAAGACTACAGAGCCATGGCTGCTTCATGATTTTGATGAGGATTTCTATGGGGAGGAATTGCATCTTATCATAGTTGGCTACATACGGCCTGAGGAAGCTCTCGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAAGCCCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

341

Amino Acids

37.94

Weight (kDa)

5.83

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	17 - 165	4.9e-08	haloacid dehalogenase-like hydrolase
Flavokinase	PF01687	225 - 322	2e-22	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	772
Acc16I	TGCGCA	1 cut(s)	741
AccII	CGCG	1 cut(s)	808
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	2 cut(s)	709, 722
AcsI	RAATTY	3 cut(s)	324, 384, 989
AfaI	GTAC	3 cut(s)	73, 708, 983
AfiI	CCNNNNNNNGG	2 cut(s)	64, 809
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	7 cut(s)	197, 253, 410, 441, 479, 725, 965
AluI	AGCT	7 cut(s)	197, 253, 410, 441, 479, 725, 965
AlwI	GGATC	2 cut(s)	709, 722
Ama87I	CYCGRG	1 cut(s)	772
AoxI	GGCC	2 cut(s)	598, 953
ApeKI	GCWGC	5 cut(s)	194, 410, 441, 488, 886
ApoI	RAATTY	3 cut(s)	324, 384, 989
ArsI	GACNNNNNNTTYG	2 cut(s)	646, 678
AseI	ATTAAT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	598, 662
AsuHPI	GGTGA	2 cut(s)	386, 571
AvaI	CYCGRG	1 cut(s)	772
AvaII	GGWCC	1 cut(s)	662
AxyI	CCTNAGG	1 cut(s)	957
BaeGI	GKGCMC	1 cut(s)	516
BamHI	GGATCC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	701
BbvI	GCAGC	5 cut(s)	206, 397, 428, 475, 873
BccI	CCATC	5 cut(s)	26, 62, 83, 140, 543
BceAI	ACGGC	1 cut(s)	968
BciT130I	CCWGG	1 cut(s)	468
BclI	TGATCA	1 cut(s)	561
BfmI	CTRYAG	2 cut(s)	720, 873
BisI	GCNGC	5 cut(s)	195, 411, 442, 489, 887
BlsI	GCNGC	5 cut(s)	196, 412, 443, 490, 888
BmcAI	AGTACT	1 cut(s)	708
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	1 cut(s)	772
BmgT120I	GGNCC	2 cut(s)	598, 662
BmiI	GGNNCC	2 cut(s)	599, 716
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	592, 937
BoxI	GACNNNNGTC	1 cut(s)	674
BpmI	CTGGAG	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	302, 647, 881
BsaWI	WCCGGW	1 cut(s)	863
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 809
Bse1I	ACTGG	1 cut(s)	373
Bse21I	CCTNAGG	1 cut(s)	957
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	302, 647, 881
BseGI	GGATG	6 cut(s)	73, 151, 583, 627, 766, 1003
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	64, 809
BseMII	CTCAG	2 cut(s)	261, 948
BseNI	ACTGG	1 cut(s)	373
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	5 cut(s)	206, 397, 428, 475, 873
BseYI	CCCAGC	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	808
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	600, 955
BsiEI	CGRYCG	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	772
BsiSI	CCGG	1 cut(s)	864
BslI	CCNNNNNNNGG	2 cut(s)	64, 809
BsnI	GGCC	2 cut(s)	600, 955
BsoBI	CYCGRG	1 cut(s)	772
Bsp1286I	GDGCHC	2 cut(s)	516, 701
Bsp143I	GATC	4 cut(s)	379, 561, 714, 970
Bsp19I	CCATGG	1 cut(s)	881
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	2 cut(s)	600, 955
BspCNI	CTCAG	2 cut(s)	260, 949
BspFNI	CGCG	1 cut(s)	808
BspHI	TCATGA	2 cut(s)	828, 892
BspLI	GGNNCC	2 cut(s)	599, 716
BspPI	GGATC	2 cut(s)	709, 722
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	3 cut(s)	302, 647, 881
BssMI	GATC	4 cut(s)	379, 561, 714, 970
BssT1I	CCWWGG	2 cut(s)	647, 881
Bst2UI	CCWGG	1 cut(s)	468
BstDEI	CTNAG	3 cut(s)	247, 358, 957
BstDSI	CCRYGG	1 cut(s)	881
BstF5I	GGATG	6 cut(s)	73, 151, 583, 627, 766, 1003
BstFNI	CGCG	1 cut(s)	808
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	4 cut(s)	382, 564, 717, 973
BstMBI	GATC	4 cut(s)	379, 561, 714, 970
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	485, 520, 886
BstNI	CCWGG	1 cut(s)	468
BstPAI	GACNNNNGTC	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	2 cut(s)	720, 873
BstSLI	GKGCMC	1 cut(s)	516
BstUI	CGCG	1 cut(s)	808
BstV1I	GCAGC	5 cut(s)	206, 397, 428, 475, 873
BstX2I	RGATCY	1 cut(s)	714
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	714
Bsu36I	CCTNAGG	1 cut(s)	957
BsuRI	GGCC	2 cut(s)	600, 955
BtgI	CCRYGG	1 cut(s)	881
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	6 cut(s)	73, 151, 583, 627, 766, 1003
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	2 cut(s)	366, 735
CciI	TCATGA	2 cut(s)	828, 892
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	598, 662
Csp6I	GTAC	3 cut(s)	72, 707, 982
CviAII	CATG	6 cut(s)	48, 275, 829, 882, 893, 1023
CviQI	GTAC	3 cut(s)	72, 707, 982
DdeI	CTNAG	3 cut(s)	247, 358, 957
DpnI	GATC	4 cut(s)	381, 563, 716, 972
DpnII	GATC	4 cut(s)	379, 561, 714, 970
DraI	TTTAAA	1 cut(s)	820
Eco130I	CCWWGG	2 cut(s)	647, 881
Eco24I	GRGCYC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	957
Eco88I	CYCGRG	1 cut(s)	772
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	2 cut(s)	647, 881
EcoT38I	GRGCYC	1 cut(s)	701
ErhI	CCWWGG	2 cut(s)	647, 881
FaeI	CATG	6 cut(s)	51, 278, 832, 885, 896, 1026
FatI	CATG	6 cut(s)	47, 274, 828, 881, 892, 1022
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	5 cut(s)	195, 411, 442, 489, 887
FokI	GGATG	6 cut(s)	80, 158, 570, 634, 753, 1010
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	5 cut(s)	195, 411, 442, 489, 887
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	5 cut(s)	195, 411, 442, 489, 887
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	2 cut(s)	600, 955
HapII	CCGG	1 cut(s)	864
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	6 cut(s)	51, 278, 832, 885, 896, 1026
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HinfI	GANTC	5 cut(s)	350, 399, 458, 670, 844
HpaII	CCGG	1 cut(s)	864
HphI	GGTGA	2 cut(s)	386, 571
Hpy188I	TCNGA	3 cut(s)	250, 303, 763
Hpy188III	TCNNGA	5 cut(s)	7, 587, 829, 893, 968
HpyAV	CCTTC	3 cut(s)	144, 364, 413
HpyCH4V	TGCA	5 cut(s)	194, 228, 391, 583, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	485, 520, 886
HpyF3I	CTNAG	3 cut(s)	247, 358, 957
Hsp92II	CATG	6 cut(s)	51, 278, 832, 885, 896, 1026
HspAI	GCGC	1 cut(s)	740
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	379, 561, 714, 970
Lsp1109I	GCAGC	5 cut(s)	206, 397, 428, 475, 873
LweI	GCATC	2 cut(s)	592, 937
MaeIII	GTNAC	3 cut(s)	374, 472, 667
MalI	GATC	4 cut(s)	381, 563, 716, 972
MboI	GATC	4 cut(s)	379, 561, 714, 970
MboII	GAAGA	3 cut(s)	22, 467, 965
MflI	RGATCY	1 cut(s)	714
MhlI	GDGCHC	2 cut(s)	516, 701
MluCI	AATT	7 cut(s)	38, 239, 324, 384, 654, 923, 989
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	3 cut(s)	151, 323, 821
MseI	TTAA	7 cut(s)	32, 110, 242, 422, 681, 819, 1011
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	3 cut(s)	197, 441, 479
MspI	CCGG	1 cut(s)	864
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	808
MwoI	GCNNNNNNNGC	3 cut(s)	485, 520, 886
NcoI	CCATGG	1 cut(s)	881
NdeII	GATC	4 cut(s)	379, 561, 714, 970
NlaIII	CATG	6 cut(s)	51, 278, 832, 885, 896, 1026
NlaIV	GGNNCC	2 cut(s)	599, 716
NmuCI	GTSAC	3 cut(s)	374, 472, 667
NsbI	TGCGCA	1 cut(s)	741
PaeR7I	CTCGAG	1 cut(s)	772
PagI	TCATGA	2 cut(s)	828, 892
PfeI	GAWTC	4 cut(s)	350, 399, 458, 844
PkrI	GCNGC	5 cut(s)	196, 412, 443, 490, 888
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	1 cut(s)	664
PpsI	GAGTC	1 cut(s)	664
PshAI	GACNNNNGTC	1 cut(s)	674
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	466
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	599, 716
PspPI	GGNCC	2 cut(s)	598, 662
PspXI	VCTCGAGB	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	714
PvuI	CGATCG	1 cut(s)	382
PvuII	CAGCTG	3 cut(s)	197, 441, 479
RsaI	GTAC	3 cut(s)	73, 708, 983
RsaNI	GTAC	3 cut(s)	72, 707, 982
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	7 cut(s)	32, 110, 242, 422, 681, 819, 1011
SatI	GCNGC	5 cut(s)	195, 411, 442, 489, 887
Sau3AI	GATC	4 cut(s)	379, 561, 714, 970
Sau96I	GGNCC	2 cut(s)	598, 662
ScaI	AGTACT	1 cut(s)	708
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	516, 701
SfaNI	GCATC	2 cut(s)	592, 937
SfcI	CTRYAG	2 cut(s)	720, 873
Sfr274I	CTCGAG	1 cut(s)	772
SinI	GGWCC	1 cut(s)	662
SlaI	CTCGAG	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	7 cut(s)	38, 239, 324, 384, 654, 923, 989
SsiI	CCGC	1 cut(s)	434
SspI	AATATT	2 cut(s)	427, 746
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	2 cut(s)	647, 881
TaqI	TCGA	4 cut(s)	186, 382, 773, 969
TasI	AATT	7 cut(s)	38, 239, 324, 384, 654, 923, 989
TatI	WGTACW	2 cut(s)	706, 981
TfiI	GAWTC	4 cut(s)	350, 399, 458, 844
Tru1I	TTAA	7 cut(s)	32, 110, 242, 422, 681, 819, 1011
Tru9I	TTAA	7 cut(s)	32, 110, 242, 422, 681, 819, 1011
TscAI	CASTG	2 cut(s)	373, 742
TseFI	GTSAC	3 cut(s)	374, 472, 667
TseI	GCWGC	5 cut(s)	194, 410, 441, 488, 886
Tsp45I	GTSAC	3 cut(s)	374, 472, 667
TspDTI	ATGAA	4 cut(s)	36, 323, 638, 881
TspRI	CASTG	2 cut(s)	373, 742
VpaK11BI	GGWCC	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	3 cut(s)	324, 384, 989
XcmI	CCANNNNNNNNNTGG	1 cut(s)	645
XhoI	CTCGAG	1 cut(s)	772
ZrmI	AGTACT	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.