Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

2254908 .. 2260020

Gene Structure 5113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g04040.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGTCTTGAAGATGTCCATCGCAGAGCCACTAAAGAAATTAGTGTCGTGTGTTATCCTTGATTTGGATGGTACACTATTACACACAGATGGCATAGTAAGTGATGTTTTAAGAGCTTATTTGGGCAAGTATGGAAAGAAATGGGATGGGCGAGAAGTTCAAAAGATAGCTGGGAAAACACCACTCGAAGCTGCAACTGCTGTTGTGGAGGATTATGGACTATCTTGCACATCTAGTGAATTACTCTCAGAGATTAACCCAATTTTCTCCAATCAGTGGTGCAACATCAAAGCTCTTCCAGGTGCCAATCGCCTAATCAAACATTTGAGTGGTCATAGAGTGCCGATAGCATTGGCTTCAAACTCTCCAAGAGAAAACATAGAAACCAAAATTTCTTTTCACCAGGGCTGGAAAGAATCCTTCTTAGTCATCATTGGAGGTGACGAAGTAACATCAGCGAAGCCATCTCCTGAGTTATTCCTTGAAGCTGCTAAAAGATTAAATATTGAACCTTCCAGCTGCCTTGTCATTGAAGATTCTTTGCCAGGTGTGACAGCTGGTAAAGCTGCTGGAATGCAGGTAGTTGTTGTACCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACTTGATTTTCATCCTGAAAAGTGGGGCCTACCTCCTTTCAAAGATTGGATAAAAGACACTTTACCAATAGAACCATGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGTTCAAAAGTACTTGGGATCCCTACAGCTAATCTATCCACCGAGCAATTTTCGACTCTCCTTTCAGAACATCCGTCGGGGGTATATTTTGGTTGGGCTGGATTACCAACCCTAGGTGTCTTTAAAATGGTCATGAGTATTGGTTGGAATCCTTATTTCAACAACGCTGAAAAGACTATAGAGCCATGGCTGCTTCATGACTTTGACGAGGACTTCTATGGGGAGGAGTTGCATCTTATCATAGTTGGGTACATACGGCCTGAGGCCAATTTCCCATCTCTAGAGAGCTTGATCGAAAAGATCCATGAGGACAGGAAAATTGCAGAGGAAGCTCTTGATCTTCCAATGTACTCAAAATTCAAAGATGACCCATATCTTAAGATTTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

386

Amino Acids

42.61

Weight (kDa)

5.38

Isoelectric Point (pI)

46.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	16 - 191	3.2e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	18 - 197	1.1e-24	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	154 - 199	5.4e-06	HAD-hyrolase-like
Flavokinase	PF01687	241 - 366	2.3e-35	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	276
AclWI	GGATC	3 cut(s)	778, 791, 1060
AcsI	RAATTY	2 cut(s)	390, 1121
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	5 cut(s)	73, 591, 777, 1016, 1115
AfiI	CCNNNNNNNGG	3 cut(s)	64, 276, 878
AflII	CTTAAG	1 cut(s)	1142
AjnI	CCWGG	3 cut(s)	298, 402, 544
AlwI	GGATC	3 cut(s)	778, 791, 1060
AoxI	GGCC	3 cut(s)	676, 1022, 1029
ApeKI	GCWGC	5 cut(s)	191, 488, 519, 566, 955
ApoI	RAATTY	2 cut(s)	390, 1121
ArsI	GACNNNNNNTTYG	2 cut(s)	724, 756
AspA2I	CCTAGG	1 cut(s)	877
AspS9I	GGNCC	2 cut(s)	676, 740
AsuHPI	GGTGA	3 cut(s)	392, 452, 649
AvaII	GGWCC	1 cut(s)	740
AvrII	CCTAGG	1 cut(s)	877
AxyI	CCTNAGG	1 cut(s)	1026
BamHI	GGATCC	1 cut(s)	783
BanI	GGYRCC	1 cut(s)	302
BbvI	GCAGC	5 cut(s)	178, 475, 506, 553, 942
BccI	CCATC	7 cut(s)	26, 62, 83, 140, 472, 621, 1048
BceAI	ACGGC	1 cut(s)	1037
BciT130I	CCWGG	3 cut(s)	300, 404, 546
BclI	TGATCA	1 cut(s)	639
BfaI	CTAG	3 cut(s)	234, 878, 1046
BfmI	CTRYAG	2 cut(s)	789, 942
BfrI	CTTAAG	1 cut(s)	1142
BfuAI	ACCTGC	1 cut(s)	568
BisI	GCNGC	5 cut(s)	192, 489, 520, 567, 956
BlnI	CCTAGG	1 cut(s)	877
BlsI	GCNGC	5 cut(s)	193, 490, 521, 568, 957
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	3 cut(s)	300, 404, 546
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	2 cut(s)	676, 740
BmiI	GGNNCC	3 cut(s)	304, 677, 785
BmrFI	CCNGG	3 cut(s)	300, 404, 546
BmsI	GCATC	1 cut(s)	1006
BsaBI	GATNNNNATC	2 cut(s)	17, 660
BsaJI	CCNNGG	4 cut(s)	403, 725, 877, 950
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 276, 878
Bse21I	CCTNAGG	1 cut(s)	1026
Bse8I	GATNNNNATC	2 cut(s)	17, 660
BseBI	CCWGG	3 cut(s)	300, 404, 546
BseDI	CCNNGG	4 cut(s)	403, 725, 877, 950
BseGI	GGATG	4 cut(s)	73, 151, 661, 835
BseJI	GATNNNNATC	2 cut(s)	17, 660
BseLI	CCNNNNNNNGG	3 cut(s)	64, 276, 878
BseMII	CTCAG	3 cut(s)	261, 462, 1017
BseRI	GAGGAG	1 cut(s)	1004
BseXI	GCAGC	5 cut(s)	178, 475, 506, 553, 942
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	3 cut(s)	678, 1024, 1031
BshNI	GGYRCC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	64, 276, 878
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	3 cut(s)	678, 1024, 1031
Bsp143I	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
Bsp19I	CCATGG	2 cut(s)	725, 950
BspANI	GGCC	3 cut(s)	678, 1024, 1031
BspCNI	CTCAG	3 cut(s)	260, 463, 1018
BspHI	TCATGA	2 cut(s)	897, 961
BspLI	GGNNCC	3 cut(s)	304, 677, 785
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	3 cut(s)	778, 791, 1060
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	1 cut(s)	302
BspTI	CTTAAG	1 cut(s)	1142
BssECI	CCNNGG	4 cut(s)	403, 725, 877, 950
BssMI	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
BssT1I	CCWWGG	3 cut(s)	725, 877, 950
Bst2UI	CCWGG	3 cut(s)	300, 404, 546
Bst6I	CTCTTC	1 cut(s)	300
BstAFI	CTTAAG	1 cut(s)	1142
BstDEI	CTNAG	4 cut(s)	247, 424, 471, 1026
BstDSI	CCRYGG	2 cut(s)	725, 950
BstF5I	GGATG	4 cut(s)	73, 151, 661, 835
BstKTI	GATC	5 cut(s)	642, 786, 1059, 1068, 1105
BstMBI	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 563, 955, 1094
BstNI	CCWGG	3 cut(s)	300, 404, 546
BstSCI	CCNGG	3 cut(s)	298, 402, 544
BstSFI	CTRYAG	2 cut(s)	789, 942
BstV1I	GCAGC	5 cut(s)	178, 475, 506, 553, 942
BstX2I	RGATCY	2 cut(s)	783, 1065
BstYI	RGATCY	2 cut(s)	783, 1065
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuRI	GGCC	3 cut(s)	678, 1024, 1031
BtgI	CCRYGG	2 cut(s)	725, 950
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	4 cut(s)	73, 151, 661, 835
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	1 cut(s)	568
CciI	TCATGA	2 cut(s)	897, 961
Cfr13I	GGNCC	2 cut(s)	676, 740
Csp6I	GTAC	5 cut(s)	72, 590, 776, 1015, 1114
CviAII	CATG	5 cut(s)	726, 898, 951, 962, 1070
CviQI	GTAC	5 cut(s)	72, 590, 776, 1015, 1114
DdeI	CTNAG	4 cut(s)	247, 424, 471, 1026
DpnI	GATC	5 cut(s)	641, 785, 1058, 1067, 1104
DpnII	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
DraI	TTTAAA	1 cut(s)	889
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	3 cut(s)	725, 877, 950
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	1026
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	3 cut(s)	298, 402, 544
EcoT14I	CCWWGG	3 cut(s)	725, 877, 950
ErhI	CCWWGG	3 cut(s)	725, 877, 950
FaeI	CATG	5 cut(s)	729, 901, 954, 965, 1073
FatI	CATG	5 cut(s)	725, 897, 950, 961, 1069
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	5 cut(s)	192, 489, 520, 567, 956
FokI	GGATG	4 cut(s)	80, 158, 648, 822
Fsp4HI	GCNGC	5 cut(s)	192, 489, 520, 567, 956
FspBI	CTAG	3 cut(s)	234, 878, 1046
GluI	GCNGC	5 cut(s)	192, 489, 520, 567, 956
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	678, 1024, 1031
Hin1II	CATG	5 cut(s)	729, 901, 954, 965, 1073
HinfI	GANTC	4 cut(s)	416, 536, 820, 913
HphI	GGTGA	3 cut(s)	392, 452, 649
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	250, 832
Hpy188III	TCNNGA	7 cut(s)	7, 470, 665, 898, 962, 1046, 1100
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	1 cut(s)	844
HpyAV	CCTTC	2 cut(s)	430, 522
HpyCH4V	TGCA	6 cut(s)	194, 228, 282, 577, 997, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 563, 955, 1094
HpyF3I	CTNAG	4 cut(s)	247, 424, 471, 1026
Hsp92II	CATG	5 cut(s)	729, 901, 954, 965, 1073
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
LguI	GCTCTTC	1 cut(s)	300
Lsp1109I	GCAGC	5 cut(s)	178, 475, 506, 553, 942
LweI	GCATC	1 cut(s)	1006
MaeI	CTAG	3 cut(s)	234, 878, 1046
MaeIII	GTNAC	3 cut(s)	440, 448, 550
MalI	GATC	5 cut(s)	641, 785, 1058, 1067, 1104
MboI	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
MboII	GAAGA	4 cut(s)	22, 287, 545, 1097
MflI	RGATCY	2 cut(s)	783, 1065
MluCI	AATT	9 cut(s)	38, 239, 261, 390, 732, 812, 1033, 1083, 1121
MlyI	GAGTC	1 cut(s)	814
MmeI	TCCRAC	1 cut(s)	890
MseI	TTAA	6 cut(s)	110, 255, 500, 750, 888, 1143
MslI	CAYNNNNRTG	2 cut(s)	87, 327
MspA1I	CMGCKG	2 cut(s)	519, 557
MspCI	CTTAAG	1 cut(s)	1142
MspR9I	CCNGG	3 cut(s)	300, 404, 546
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	3 cut(s)	300, 404, 546
MwoI	GCNNNNNNNGC	4 cut(s)	197, 563, 955, 1094
NcoI	CCATGG	2 cut(s)	725, 950
NdeII	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
NlaIII	CATG	5 cut(s)	729, 901, 954, 965, 1073
NlaIV	GGNNCC	3 cut(s)	304, 677, 785
NmuCI	GTSAC	2 cut(s)	440, 550
PagI	TCATGA	2 cut(s)	897, 961
PciSI	GCTCTTC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	416, 536, 913
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	5 cut(s)	193, 490, 521, 568, 957
PleI	GAGTC	1 cut(s)	814
PpsI	GAGTC	1 cut(s)	814
Psp6I	CCWGG	3 cut(s)	298, 402, 544
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	3 cut(s)	298, 402, 544
PspN4I	GGNNCC	3 cut(s)	304, 677, 785
PspPI	GGNCC	2 cut(s)	676, 740
PsuI	RGATCY	2 cut(s)	783, 1065
PvuII	CAGCTG	2 cut(s)	519, 557
RsaI	GTAC	5 cut(s)	73, 591, 777, 1016, 1115
RsaNI	GTAC	5 cut(s)	72, 590, 776, 1015, 1114
RseI	CAYNNNNRTG	2 cut(s)	87, 327
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	6 cut(s)	110, 255, 500, 750, 888, 1143
SatI	GCNGC	5 cut(s)	192, 489, 520, 567, 956
Sau3AI	GATC	5 cut(s)	639, 783, 1056, 1065, 1102
Sau96I	GGNCC	2 cut(s)	676, 740
ScaI	AGTACT	1 cut(s)	777
SchI	GAGTC	1 cut(s)	814
ScrFI	CCNGG	3 cut(s)	300, 404, 546
SfaNI	GCATC	1 cut(s)	1006
SfcI	CTRYAG	2 cut(s)	789, 942
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	87, 327
SmlI	CTYRAG	1 cut(s)	1142
SmoI	CTYRAG	1 cut(s)	1142
Sse9I	AATT	9 cut(s)	38, 239, 261, 390, 732, 812, 1033, 1083, 1121
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	3 cut(s)	234, 878, 1046
StyD4I	CCNGG	3 cut(s)	298, 402, 544
StyI	CCWWGG	3 cut(s)	725, 877, 950
TaqI	TCGA	3 cut(s)	186, 818, 1059
TasI	AATT	9 cut(s)	38, 239, 261, 390, 732, 812, 1033, 1083, 1121
TatI	WGTACW	2 cut(s)	775, 1113
TfiI	GAWTC	3 cut(s)	416, 536, 913
Tru1I	TTAA	6 cut(s)	110, 255, 500, 750, 888, 1143
Tru9I	TTAA	6 cut(s)	110, 255, 500, 750, 888, 1143
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	2 cut(s)	440, 550
TseI	GCWGC	5 cut(s)	191, 488, 519, 566, 955
Tsp45I	GTSAC	2 cut(s)	440, 550
TspDTI	ATGAA	2 cut(s)	650, 950
TspGWI	ACGGA	1 cut(s)	828
TspRI	CASTG	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	1142
VpaK11BI	GGWCC	1 cut(s)	740
XapI	RAATTY	2 cut(s)	390, 1121
XbaI	TCTAGA	1 cut(s)	1045
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XmaJI	CCTAGG	1 cut(s)	877
XspI	CTAG	3 cut(s)	234, 878, 1046
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.