Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

4741932 .. 4747481

Gene Structure 5550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031394

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCCATCGCAGAGCCATTAAAGAAATTAGTTTCATGTGTTATCCTTGATTTGGATGATGGCATAGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAGTATGGAAAGAAATGGGATGGAAGGGAACTTCAAAAGATAGTTGGAAAATCACCACTCGAAGTTGCAGCTGCTACTGTGGAGGATTATGGGCTATCTTGCACAACGAGTCAATTAATCTCAGAGCTAAACCCAATGTTCTCCACTCAGTGGTGCAACATCAAAGCGCTTCCAGGTGCCAATCGGTTAATTAAGCATTTGAGTGGTCACAGAGTGCCAATAGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAGTTTCTTTTCATCAGGGAATTACTTATTTTCTTATTGTGTTTTCATATGTGGGTTGGAAAGAATCCTTCTTAGTCATCATTGGAGGTGACGAAGTAAGATCAGGAAAGCAATCTCCTGAAATATTCCTTGAAACTGCTAAAAGATTAAATATTGAATCGTCCAGCTGCCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCTGGTAAGGCTGCTGGAATGGGGGTAGTTGCTGTACCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACTTGACTTGCATCCTGAAAAGTGGGGCCTACCTCATTTCAAAGATTGGATGAAAGACACTTTACCAATAGAACCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCCTACAGGTTTGGGGTTATCATCTTTTATCTAACTAATCTATCCACCGCGCAATATTCAACACTCCTTTCAGAACATCCCTCGGGGGTATATTTCGGTTGGGCTGGATTACCAACGGGAGGTGTCTTTAAAATGGAGCCATGGCTGCTTCATGATTTTGATGAGGATTTCTATGGGGAGGAATTGCATCTTATCATAGTTGGCTACATACGGCCTGAGGCCAATTTCCCAACCCTCGAGAGCTTGATCGAAAAGATCCATGAGGACCGGAAAATTGCAGAGGAAGCTCTCGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAAGCCCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

380

Amino Acids

42.13

Weight (kDa)

5.63

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	14 - 199	7.4e-12	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	85 - 193	1.4e-14	haloacid dehalogenase-like hydrolase
Flavokinase	PF01687	243 - 360	4.5e-14	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	1 cut(s)	842
AciI	CCGC	1 cut(s)	840
AclWI	GGATC	3 cut(s)	784, 797, 1042
AcsI	RAATTY	1 cut(s)	1103
AcuI	CTGAAG	1 cut(s)	615
AdeI	CACNNNGTG	2 cut(s)	246, 310
AfaI	GTAC	3 cut(s)	597, 783, 1097
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	52, 246, 911
AgsI	TTSAA	8 cut(s)	131, 330, 491, 515, 539, 697, 852, 1108
AjnI	CCWGG	2 cut(s)	268, 550
AluBI	AGCT	6 cut(s)	167, 223, 525, 563, 1035, 1079
AluI	AGCT	6 cut(s)	167, 223, 525, 563, 1035, 1079
AlwI	GGATC	3 cut(s)	784, 797, 1042
Ama87I	CYCGRG	2 cut(s)	874, 1028
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	3 cut(s)	682, 1004, 1011
ApeKI	GCWGC	5 cut(s)	164, 167, 525, 572, 937
ApoI	RAATTY	1 cut(s)	1103
ArsI	GACNNNNNNTTYG	2 cut(s)	730, 762
AseI	ATTAAT	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	265, 844
AspS9I	GGNCC	3 cut(s)	682, 746, 1057
AsuHPI	GGTGA	3 cut(s)	141, 458, 655
AvaI	CYCGRG	2 cut(s)	874, 1028
AvaII	GGWCC	2 cut(s)	746, 1057
AxyI	CCTNAGG	1 cut(s)	1008
BamHI	GGATCC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	776
BbvI	GCAGC	5 cut(s)	154, 176, 512, 559, 924
BccI	CCATC	4 cut(s)	14, 53, 110, 627
BceAI	ACGGC	1 cut(s)	1019
BciT130I	CCWGG	2 cut(s)	270, 552
BclI	TGATCA	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	796
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	5 cut(s)	165, 168, 526, 573, 938
BlsI	GCNGC	5 cut(s)	166, 169, 527, 574, 939
BmcAI	AGTACT	1 cut(s)	783
Bme1390I	CCNGG	2 cut(s)	270, 552
Bme18I	GGWCC	2 cut(s)	746, 1057
BmeT110I	CYCGRG	2 cut(s)	874, 1028
BmgT120I	GGNCC	3 cut(s)	682, 746, 1057
BmiI	GGNNCC	4 cut(s)	274, 683, 791, 930
BmrFI	CCNGG	2 cut(s)	270, 552
BmsI	GCATC	2 cut(s)	676, 988
BsaJI	CCNNGG	4 cut(s)	338, 731, 873, 932
BsaWI	WCCGGW	1 cut(s)	1059
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 246, 911
Bse21I	CCTNAGG	1 cut(s)	1008
BseBI	CCWGG	2 cut(s)	270, 552
BseDI	CCNNGG	4 cut(s)	338, 731, 873, 932
BseGI	GGATG	6 cut(s)	61, 121, 667, 711, 868, 1117
BseLI	CCNNNNNNNGG	3 cut(s)	52, 246, 911
BseMII	CTCAG	3 cut(s)	231, 257, 999
BseXI	GCAGC	5 cut(s)	154, 176, 512, 559, 924
Bsh1236I	CGCG	1 cut(s)	842
BshFI	GGCC	3 cut(s)	684, 1006, 1013
BshNI	GGYRCC	1 cut(s)	272
BsiHKCI	CYCGRG	2 cut(s)	874, 1028
BsiSI	CCGG	1 cut(s)	1060
BslI	CCNNNNNNNGG	3 cut(s)	52, 246, 911
BsnI	GGCC	3 cut(s)	684, 1006, 1013
BsoBI	CYCGRG	2 cut(s)	874, 1028
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp143I	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
Bsp19I	CCATGG	1 cut(s)	932
BspACI	CCGC	1 cut(s)	840
BspANI	GGCC	3 cut(s)	684, 1006, 1013
BspCNI	CTCAG	3 cut(s)	230, 256, 1000
BspFNI	CGCG	1 cut(s)	842
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	4 cut(s)	274, 683, 791, 930
BspPI	GGATC	3 cut(s)	784, 797, 1042
BspT107I	GGYRCC	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	338, 731, 873, 932
BssMI	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
BssT1I	CCWWGG	3 cut(s)	338, 731, 932
Bst2UI	CCWGG	2 cut(s)	270, 552
Bst4CI	ACNGT	1 cut(s)	175
BstDEI	CTNAG	4 cut(s)	217, 243, 430, 1008
BstDSI	CCRYGG	1 cut(s)	932
BstF5I	GGATG	6 cut(s)	61, 121, 667, 711, 868, 1117
BstFNI	CGCG	1 cut(s)	842
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	2 cut(s)	265, 844
BstKTI	GATC	6 cut(s)	461, 648, 792, 1041, 1050, 1087
BstMBI	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 937, 1076
BstNI	CCWGG	2 cut(s)	270, 552
BstSCI	CCNGG	2 cut(s)	268, 550
BstSFI	CTRYAG	1 cut(s)	796
BstUI	CGCG	1 cut(s)	842
BstV1I	GCAGC	5 cut(s)	154, 176, 512, 559, 924
BstX2I	RGATCY	2 cut(s)	789, 1047
BstYI	RGATCY	2 cut(s)	789, 1047
Bsu36I	CCTNAGG	1 cut(s)	1008
BsuRI	GGCC	3 cut(s)	684, 1006, 1013
BtgI	CCRYGG	1 cut(s)	932
BtsCI	GGATG	6 cut(s)	61, 121, 667, 711, 868, 1117
BtsIMutI	CAGTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	2 cut(s)	265, 844
Cfr13I	GGNCC	3 cut(s)	682, 746, 1057
Csp6I	GTAC	3 cut(s)	596, 782, 1096
CviAII	CATG	5 cut(s)	36, 933, 944, 1052, 1137
CviQI	GTAC	3 cut(s)	596, 782, 1096
DdeI	CTNAG	4 cut(s)	217, 243, 430, 1008
DpnI	GATC	6 cut(s)	460, 647, 791, 1040, 1049, 1086
DpnII	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
DraI	TTTAAA	1 cut(s)	922
DraIII	CACNNNGTG	2 cut(s)	246, 310
Eco130I	CCWWGG	3 cut(s)	338, 731, 932
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	2 cut(s)	746, 1057
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	615
Eco81I	CCTNAGG	1 cut(s)	1008
Eco88I	CYCGRG	2 cut(s)	874, 1028
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	268, 550
EcoT14I	CCWWGG	3 cut(s)	338, 731, 932
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	3 cut(s)	338, 731, 932
FaeI	CATG	5 cut(s)	39, 936, 947, 1055, 1140
FatI	CATG	5 cut(s)	35, 932, 943, 1051, 1136
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	645
Fnu4HI	GCNGC	5 cut(s)	165, 168, 526, 573, 938
FokI	GGATG	6 cut(s)	68, 128, 654, 718, 855, 1124
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	5 cut(s)	165, 168, 526, 573, 938
GlaI	GCGC	2 cut(s)	264, 843
GluI	GCNGC	5 cut(s)	165, 168, 526, 573, 938
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	684, 1006, 1013
HapII	CCGG	1 cut(s)	1060
HhaI	GCGC	2 cut(s)	265, 844
Hin1II	CATG	5 cut(s)	39, 936, 947, 1055, 1140
Hin6I	GCGC	2 cut(s)	263, 842
HinP1I	GCGC	2 cut(s)	263, 842
HinfI	GANTC	4 cut(s)	205, 422, 515, 542
HpaII	CCGG	1 cut(s)	1060
HphI	GGTGA	3 cut(s)	141, 458, 655
Hpy188I	TCNGA	2 cut(s)	220, 865
Hpy188III	TCNNGA	6 cut(s)	462, 476, 671, 944, 1030, 1082
HpyAV	CCTTC	2 cut(s)	114, 436
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4V	TGCA	6 cut(s)	164, 198, 252, 667, 979, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 937, 1076
HpyF3I	CTNAG	4 cut(s)	217, 243, 430, 1008
Hsp92II	CATG	5 cut(s)	39, 936, 947, 1055, 1140
HspAI	GCGC	2 cut(s)	263, 842
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
LmnI	GCTCC	1 cut(s)	928
Lsp1109I	GCAGC	5 cut(s)	154, 176, 512, 559, 924
LweI	GCATC	2 cut(s)	676, 988
MaeIII	GTNAC	3 cut(s)	302, 446, 556
MalI	GATC	6 cut(s)	460, 647, 791, 1040, 1049, 1086
MboI	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
MboII	GAAGA	2 cut(s)	551, 1079
MflI	RGATCY	2 cut(s)	789, 1047
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	9 cut(s)	26, 209, 285, 378, 738, 974, 1015, 1065, 1103
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	2 cut(s)	121, 395
MseI	TTAA	9 cut(s)	20, 80, 212, 284, 288, 506, 756, 921, 1125
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	3 cut(s)	167, 525, 563
MspI	CCGG	1 cut(s)	1060
MspR9I	CCNGG	2 cut(s)	270, 552
MvaI	CCWGG	2 cut(s)	270, 552
MvnI	CGCG	1 cut(s)	842
MwoI	GCNNNNNNNGC	3 cut(s)	569, 937, 1076
NcoI	CCATGG	1 cut(s)	932
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
NlaIII	CATG	5 cut(s)	39, 936, 947, 1055, 1140
NlaIV	GGNNCC	4 cut(s)	274, 683, 791, 930
NmuCI	GTSAC	3 cut(s)	302, 446, 556
PacI	TTAATTAA	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	943
PfeI	GAWTC	3 cut(s)	422, 515, 542
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	5 cut(s)	166, 169, 527, 574, 939
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	268, 550
PspGI	CCWGG	2 cut(s)	268, 550
PspN4I	GGNNCC	4 cut(s)	274, 683, 791, 930
PspPI	GGNCC	3 cut(s)	682, 746, 1057
PsuI	RGATCY	2 cut(s)	789, 1047
PvuII	CAGCTG	3 cut(s)	167, 525, 563
RsaI	GTAC	3 cut(s)	597, 783, 1097
RsaNI	GTAC	3 cut(s)	596, 782, 1096
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	9 cut(s)	20, 80, 212, 284, 288, 506, 756, 921, 1125
SatI	GCNGC	5 cut(s)	165, 168, 526, 573, 938
Sau3AI	GATC	6 cut(s)	458, 645, 789, 1038, 1047, 1084
Sau96I	GGNCC	3 cut(s)	682, 746, 1057
ScaI	AGTACT	1 cut(s)	783
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	270, 552
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	2 cut(s)	676, 988
SfcI	CTRYAG	1 cut(s)	796
Sfr274I	CTCGAG	1 cut(s)	1028
SinI	GGWCC	2 cut(s)	746, 1057
SlaI	CTCGAG	1 cut(s)	1028
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
Sse9I	AATT	9 cut(s)	26, 209, 285, 378, 738, 974, 1015, 1065, 1103
SsiI	CCGC	1 cut(s)	840
SspI	AATATT	3 cut(s)	483, 511, 848
StyD4I	CCNGG	2 cut(s)	268, 550
StyI	CCWWGG	3 cut(s)	338, 731, 932
TaaI	ACNGT	1 cut(s)	175
TaqI	TCGA	4 cut(s)	156, 1029, 1041, 1083
TasI	AATT	9 cut(s)	26, 209, 285, 378, 738, 974, 1015, 1065, 1103
TatI	WGTACW	2 cut(s)	781, 1095
TfiI	GAWTC	3 cut(s)	422, 515, 542
Tru1I	TTAA	9 cut(s)	20, 80, 212, 284, 288, 506, 756, 921, 1125
Tru9I	TTAA	9 cut(s)	20, 80, 212, 284, 288, 506, 756, 921, 1125
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	3 cut(s)	302, 446, 556
TseI	GCWGC	5 cut(s)	164, 167, 525, 572, 937
Tsp45I	GTSAC	3 cut(s)	302, 446, 556
TspDTI	ATGAA	5 cut(s)	24, 359, 393, 722, 932
TspRI	CASTG	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	746, 1057
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	1 cut(s)	1103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XhoI	CTCGAG	1 cut(s)	1028
ZrmI	AGTACT	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.