Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

3976010 .. 3980968

Gene Structure 4959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCTTCGCTTTGCTTTCTGTCAAGCCCACACATCTCTCTCCCTCCAAAGCCCAGATCACTTCCAATCAGAATGTTCCATTGATCAGAGCATAGTGAATCTCTGTGATCTGTATGTGGTCTTGAAGATGTCTATCACCAAGCCATTAAAGAAATTAGTGTCGTGTGTTATCCTTGATTTGGATGGTACACTACTACACACAGATGGCATAGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAGTATGGAAAGAAATGGGATGGGAGGGAAGTTCAAAAGATAGTTGGAAAAACACCACTCGAAGCTGCAACTGCTGTTGTGGAGGATTATGGGCTATCTTGCACAACGAGTGAATTACTCTCAGAGCTTGACCCAATGTTCTCAAATCAGTGGTGCAACATCAAAGCGCTTCCAGGTGCCAATCGGCTAATTAAACATTTGAGCGGTCACAGAGTGCCAATAGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAATTTCTTTTCATCAGGGTTGGAAAGAATCCTTCTTAGTTATCATTGGAGGTGACGAAGTAAGATCAGGAAAGCCATCTCCTGAAATATTCCTTGAAGCTGCTAAAAGATTAAATATTGAACCGTCCAGCTGTCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCCGGGAAGGCTGCTGGAATGGAGGTAGTTGCTGTACCCTCTCTGCCAAAGCAATCCCATCTCTTTACTTCAGCAGATGAGGTGATCAACTCTCTACTTGATTTGCATCCTGAAAAGTGGGGCCTACCTCCTTTCAAAGATTGGATAAAAGACACTTTGCCAATAGAATCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGCTAATCTATCCACCGAGCGATATTCAGCTCTCCTTTCAGAACATCCCTCGGGAGTATATTTCGGTTGGGCTGGATTACCAACGCGAGGTGTCTTTAAAATGGTCATGAGTATTGGTTGGAATCCTTATTTCAACAACACTGAAAAGACTATAGAGCCGTGGCTGCTTCATGACTTTGATGAGGACTTCTATGGGGAGGAATTGCATCTTATCATAGTTGGCTACATACGGCCTGAGGCCAATTTCCCGTCTCTCGAGAGCTTGATCGAAAAGATCCATGAGGACCGGAAAATTGCAGAGGAAGCTCTTGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAGACTCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

423

Amino Acids

47.07

Weight (kDa)

5.45

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	54 - 229	4e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	56 - 235	1.5e-23	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	191 - 237	1.4e-06	HAD-hyrolase-like
Flavokinase	PF01687	280 - 404	1.5e-35	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	444
AccII	CGCG	1 cut(s)	991
AciI	CCGC	1 cut(s)	444
AclWI	GGATC	3 cut(s)	892, 905, 1174
AcsI	RAATTY	2 cut(s)	504, 1235
AcuI	CTGAAG	1 cut(s)	723
AdeI	CACNNNGTG	1 cut(s)	454
AfaI	GTAC	4 cut(s)	187, 705, 891, 1229
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	178, 992
AgsI	TTSAA	9 cut(s)	124, 275, 474, 599, 623, 647, 805, 1039, 1240
AjnI	CCWGG	2 cut(s)	412, 658
AluBI	AGCT	8 cut(s)	305, 367, 602, 633, 908, 935, 1167, 1211
AluI	AGCT	8 cut(s)	305, 367, 602, 633, 908, 935, 1167, 1211
Alw26I	GTCTC	1 cut(s)	1161
AlwI	GGATC	3 cut(s)	892, 905, 1174
Ama87I	CYCGRG	2 cut(s)	955, 1160
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	3 cut(s)	790, 1136, 1143
ApeKI	GCWGC	4 cut(s)	305, 602, 680, 1069
ApoI	RAATTY	2 cut(s)	504, 1235
ArsI	GACNNNNNNTTYG	2 cut(s)	838, 870
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	3 cut(s)	790, 854, 1189
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	3 cut(s)	127, 566, 763
AvaI	CYCGRG	2 cut(s)	955, 1160
AvaII	GGWCC	2 cut(s)	854, 1189
AxyI	CCTNAGG	1 cut(s)	1140
BamHI	GGATCC	1 cut(s)	897
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	884
BbvI	GCAGC	4 cut(s)	292, 589, 667, 1056
BccI	CCATC	5 cut(s)	176, 197, 254, 586, 735
BceAI	ACGGC	2 cut(s)	1048, 1151
BciT130I	CCWGG	2 cut(s)	414, 660
BclI	TGATCA	2 cut(s)	82, 753
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	1161
BfmI	CTRYAG	2 cut(s)	903, 1056
BfoI	RGCGCY	1 cut(s)	410
BglI	GCCNNNNNGGC	1 cut(s)	677
BisI	GCNGC	4 cut(s)	306, 603, 681, 1070
BlsI	GCNGC	4 cut(s)	307, 604, 682, 1071
BmcAI	AGTACT	1 cut(s)	891
Bme1390I	CCNGG	3 cut(s)	414, 660, 673
Bme18I	GGWCC	2 cut(s)	854, 1189
BmeT110I	CYCGRG	2 cut(s)	955, 1160
BmgT120I	GGNCC	3 cut(s)	790, 854, 1189
BmiI	GGNNCC	3 cut(s)	418, 791, 899
BmrFI	CCNGG	3 cut(s)	414, 660, 673
BmsI	GCATC	2 cut(s)	784, 1120
BpuMI	CCSGG	1 cut(s)	673
BsaBI	GATNNNNATC	2 cut(s)	131, 774
BsaJI	CCNNGG	3 cut(s)	482, 954, 1064
BsaWI	WCCGGW	1 cut(s)	1191
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 992
Bse21I	CCTNAGG	1 cut(s)	1140
Bse8I	GATNNNNATC	2 cut(s)	131, 774
BseBI	CCWGG	2 cut(s)	414, 660
BseDI	CCNNGG	3 cut(s)	482, 954, 1064
BseGI	GGATG	5 cut(s)	187, 265, 775, 949, 1249
BseJI	GATNNNNATC	2 cut(s)	131, 774
BseLI	CCNNNNNNNGG	2 cut(s)	178, 992
BseMII	CTCAG	2 cut(s)	375, 1131
BseXI	GCAGC	4 cut(s)	292, 589, 667, 1056
Bsh1236I	CGCG	1 cut(s)	991
BshFI	GGCC	3 cut(s)	792, 1138, 1145
BshNI	GGYRCC	1 cut(s)	416
BsiHKCI	CYCGRG	2 cut(s)	955, 1160
BsiSI	CCGG	2 cut(s)	672, 1192
BslI	CCNNNNNNNGG	2 cut(s)	178, 992
BsmAI	GTCTC	1 cut(s)	1161
BsmBI	CGTCTC	1 cut(s)	1161
BsnI	GGCC	3 cut(s)	792, 1138, 1145
BsoBI	CYCGRG	2 cut(s)	955, 1160
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp143I	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
BspACI	CCGC	1 cut(s)	444
BspANI	GGCC	3 cut(s)	792, 1138, 1145
BspCNI	CTCAG	2 cut(s)	374, 1132
BspFNI	CGCG	1 cut(s)	991
BspHI	TCATGA	2 cut(s)	1011, 1075
BspLI	GGNNCC	3 cut(s)	418, 791, 899
BspPI	GGATC	3 cut(s)	892, 905, 1174
BspT107I	GGYRCC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	444
BssECI	CCNNGG	3 cut(s)	482, 954, 1064
BssMI	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	2 cut(s)	414, 660
Bst4CI	ACNGT	1 cut(s)	627
BstDEI	CTNAG	3 cut(s)	361, 538, 1140
BstDSI	CCRYGG	1 cut(s)	1064
BstF5I	GGATG	5 cut(s)	187, 265, 775, 949, 1249
BstFNI	CGCG	1 cut(s)	991
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	9 cut(s)	58, 85, 109, 569, 756, 900, 1173, 1182, 1219
BstMAI	GTCTC	1 cut(s)	1161
BstMBI	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 677, 1069, 1208
BstNI	CCWGG	2 cut(s)	414, 660
BstSCI	CCNGG	3 cut(s)	412, 658, 671
BstSFI	CTRYAG	2 cut(s)	903, 1056
BstUI	CGCG	1 cut(s)	991
BstV1I	GCAGC	4 cut(s)	292, 589, 667, 1056
BstX2I	RGATCY	2 cut(s)	897, 1179
BstYI	RGATCY	2 cut(s)	897, 1179
Bsu36I	CCTNAGG	1 cut(s)	1140
BsuRI	GGCC	3 cut(s)	792, 1138, 1145
BtgI	CCRYGG	1 cut(s)	1064
BtsCI	GGATG	5 cut(s)	187, 265, 775, 949, 1249
BtsIMutI	CAGTG	2 cut(s)	395, 1044
CciI	TCATGA	2 cut(s)	1011, 1075
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	3 cut(s)	790, 854, 1189
Csp6I	GTAC	4 cut(s)	186, 704, 890, 1228
CviAII	CATG	3 cut(s)	1012, 1076, 1184
CviQI	GTAC	4 cut(s)	186, 704, 890, 1228
DdeI	CTNAG	3 cut(s)	361, 538, 1140
DpnI	GATC	9 cut(s)	57, 84, 108, 568, 755, 899, 1172, 1181, 1218
DpnII	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
DraI	TTTAAA	1 cut(s)	1003
DraIII	CACNNNGTG	1 cut(s)	454
Eco130I	CCWWGG	1 cut(s)	482
Eco24I	GRGCYC	1 cut(s)	884
Eco47I	GGWCC	2 cut(s)	854, 1189
Eco47III	AGCGCT	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	723
Eco81I	CCTNAGG	1 cut(s)	1140
Eco88I	CYCGRG	2 cut(s)	955, 1160
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	412, 658
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	482
Esp3I	CGTCTC	1 cut(s)	1161
FaeI	CATG	3 cut(s)	1015, 1079, 1187
FatI	CATG	3 cut(s)	1011, 1075, 1183
FbaI	TGATCA	2 cut(s)	82, 753
Fnu4HI	GCNGC	4 cut(s)	306, 603, 681, 1070
FokI	GGATG	5 cut(s)	194, 272, 762, 936, 1256
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	4 cut(s)	306, 603, 681, 1070
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	4 cut(s)	306, 603, 681, 1070
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	792, 1138, 1145
HapII	CCGG	2 cut(s)	672, 1192
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	3 cut(s)	1015, 1079, 1187
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	6 cut(s)	97, 530, 650, 836, 1027, 1262
HpaII	CCGG	2 cut(s)	672, 1192
HphI	GGTGA	3 cut(s)	127, 566, 763
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	4 cut(s)	70, 87, 364, 946
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	544, 670
HpyCH4III	ACNGT	1 cut(s)	627
HpyCH4V	TGCA	6 cut(s)	308, 342, 396, 775, 1111, 1202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 677, 1069, 1208
HpyF3I	CTNAG	3 cut(s)	361, 538, 1140
Hsp92II	CATG	3 cut(s)	1015, 1079, 1187
HspAI	GCGC	1 cut(s)	407
Ksp22I	TGATCA	2 cut(s)	82, 753
Kzo9I	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
Lsp1109I	GCAGC	4 cut(s)	292, 589, 667, 1056
LweI	GCATC	2 cut(s)	784, 1120
MaeIII	GTNAC	3 cut(s)	446, 554, 664
MalI	GATC	9 cut(s)	57, 84, 108, 568, 755, 899, 1172, 1181, 1218
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
MboII	GAAGA	3 cut(s)	136, 659, 1211
MflI	RGATCY	2 cut(s)	897, 1179
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	9 cut(s)	152, 353, 429, 504, 846, 1106, 1147, 1197, 1235
MlyI	GAGTC	1 cut(s)	1256
MmeI	TCCRAC	3 cut(s)	265, 503, 1004
MseI	TTAA	7 cut(s)	146, 224, 432, 614, 864, 1002, 1257
MslI	CAYNNNNRTG	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	633
MspI	CCGG	2 cut(s)	672, 1192
MspR9I	CCNGG	3 cut(s)	414, 660, 673
MvaI	CCWGG	2 cut(s)	414, 660
MvnI	CGCG	1 cut(s)	991
MwoI	GCNNNNNNNGC	4 cut(s)	311, 677, 1069, 1208
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
NlaIII	CATG	3 cut(s)	1015, 1079, 1187
NlaIV	GGNNCC	3 cut(s)	418, 791, 899
NmuCI	GTSAC	3 cut(s)	446, 554, 664
PaeR7I	CTCGAG	1 cut(s)	1160
PagI	TCATGA	2 cut(s)	1011, 1075
PfeI	GAWTC	5 cut(s)	97, 530, 650, 836, 1027
PkrI	GCNGC	4 cut(s)	307, 604, 682, 1071
PleI	GAGTC	1 cut(s)	1256
PpsI	GAGTC	1 cut(s)	1256
Psp6I	CCWGG	2 cut(s)	412, 658
PspGI	CCWGG	2 cut(s)	412, 658
PspN4I	GGNNCC	3 cut(s)	418, 791, 899
PspPI	GGNCC	3 cut(s)	790, 854, 1189
PsuI	RGATCY	2 cut(s)	897, 1179
PvuII	CAGCTG	1 cut(s)	633
RsaI	GTAC	4 cut(s)	187, 705, 891, 1229
RsaNI	GTAC	4 cut(s)	186, 704, 890, 1228
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	7 cut(s)	146, 224, 432, 614, 864, 1002, 1257
SatI	GCNGC	4 cut(s)	306, 603, 681, 1070
Sau3AI	GATC	9 cut(s)	55, 82, 106, 566, 753, 897, 1170, 1179, 1216
Sau96I	GGNCC	3 cut(s)	790, 854, 1189
ScaI	AGTACT	1 cut(s)	891
SchI	GAGTC	1 cut(s)	1256
ScrFI	CCNGG	3 cut(s)	414, 660, 673
SduI	GDGCHC	1 cut(s)	884
SfaNI	GCATC	2 cut(s)	784, 1120
SfcI	CTRYAG	2 cut(s)	903, 1056
Sfr274I	CTCGAG	1 cut(s)	1160
SinI	GGWCC	2 cut(s)	854, 1189
SlaI	CTCGAG	1 cut(s)	1160
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	1160
SmoI	CTYRAG	1 cut(s)	1160
Sse9I	AATT	9 cut(s)	152, 353, 429, 504, 846, 1106, 1147, 1197, 1235
SsiI	CCGC	1 cut(s)	444
SspI	AATATT	2 cut(s)	591, 619
StyD4I	CCNGG	3 cut(s)	412, 658, 671
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	300, 1161, 1173
TasI	AATT	9 cut(s)	152, 353, 429, 504, 846, 1106, 1147, 1197, 1235
TatI	WGTACW	2 cut(s)	889, 1227
TfiI	GAWTC	5 cut(s)	97, 530, 650, 836, 1027
Tru1I	TTAA	7 cut(s)	146, 224, 432, 614, 864, 1002, 1257
Tru9I	TTAA	7 cut(s)	146, 224, 432, 614, 864, 1002, 1257
TscAI	CASTG	2 cut(s)	395, 1051
TseFI	GTSAC	3 cut(s)	446, 554, 664
TseI	GCWGC	4 cut(s)	305, 602, 680, 1069
Tsp45I	GTSAC	3 cut(s)	446, 554, 664
TspDTI	ATGAA	2 cut(s)	503, 1064
TspRI	CASTG	2 cut(s)	395, 1051
VpaK11BI	GGWCC	2 cut(s)	854, 1189
XapI	RAATTY	2 cut(s)	504, 1235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	837
XhoI	CTCGAG	1 cut(s)	1160
ZrmI	AGTACT	1 cut(s)	891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.