Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

5135099 .. 5137765

Gene Structure 2667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G004940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCCATCGCAGAGCCATTAAAGAAATTAGTTTCATGTGTTATCCTTGATTTGGATGGTACTCTACTACACACAGATGGCATAATAAGTGATGTTTTAAGAGTATATTTGGGGAAGTATGGAAAGAAATGGGATGGGAGGGAAGTTCAAAAGATAGTTGGAAAAACACCATTCGAAGCTGCAACTGCTATTGTGGAGGATTATGGGCTGTCTTGCACAACGAGTGAATTAATCTCAGAGCTAAACCCAATGTTCTCCAATCAGTGGTGCAACATCAAAGCGCTTCCAGGTGCCAATCGGCTAATTAAACATTTGAGTGGTCACAGAGTGCCAATAGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAATTTCTTTTCATCAGGGTTGGAAAGAATCCTTCTTAGTCATCATTGGAGGTGACGAAGTAAGATCAGGAAAGTCATCTCCTGAAATATTCCTTGAAGCTGCTAAAAGATTAAATATTGAACCGTCCAGCTGCCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCCGGTAAGGCTGCTGGAATGGGGTTAGTTGCTGTACCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACTTGATTTGCATCCTGAAAAGTGGGGCCTACCTCCTTTCAAAGATTGGATAAAAGACACTTTACCAATAGAACCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGCTAATCTATCCACCGAGCGATATTCAACTCTCCTTTCAGAACATCCCTCGGGAGTATATTTCGGTTGGGCTGGATTACGAACGCGAGGTGTCTTTAAAATGGTCATGAGTATTGGTTGGAATCCTTATTTCAACAACACTGAAAAGACTATAGAGCCATGGCTGCTTCATGACTTTGGTGAGGACTTCTATGGGGAGGAATTGCATCTTATCATAGTTGGCTACATACGGCCTGAGGCCAATTTCCCATCTCTCGAGAGCTTGATCGAAAAGATCCATGAGGACAGGAAAATTGCAGAGGAAGCTCTTGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAAGCCCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

381

Amino Acids

42.3

Weight (kDa)

5.75

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	12 - 187	5.4e-23	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	14 - 193	2.3e-21	Haloacid dehalogenase-like hydrolase
Flavokinase	PF01687	237 - 362	8.4e-36	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	264
AccII	CGCG	1 cut(s)	865
AclWI	GGATC	3 cut(s)	766, 779, 1048
AcsI	RAATTY	2 cut(s)	378, 1109
AcuI	CTGAAG	1 cut(s)	597
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	4 cut(s)	61, 579, 765, 1103
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	52, 264
AgsI	TTSAA	9 cut(s)	149, 348, 473, 497, 521, 679, 807, 913, 1114
AjnI	CCWGG	2 cut(s)	286, 532
AluBI	AGCT	7 cut(s)	179, 241, 476, 507, 782, 1041, 1085
AluI	AGCT	7 cut(s)	179, 241, 476, 507, 782, 1041, 1085
AlwI	GGATC	3 cut(s)	766, 779, 1048
Ama87I	CYCGRG	2 cut(s)	829, 1034
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	3 cut(s)	664, 1010, 1017
ApeKI	GCWGC	5 cut(s)	179, 476, 507, 554, 943
ApoI	RAATTY	2 cut(s)	378, 1109
ArsI	GACNNNNNNTTYG	2 cut(s)	712, 744
AseI	ATTAAT	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	664, 728
AsuHPI	GGTGA	3 cut(s)	440, 637, 971
AsuII	TTCGAA	1 cut(s)	174
AvaI	CYCGRG	2 cut(s)	829, 1034
AvaII	GGWCC	1 cut(s)	728
AxyI	CCTNAGG	1 cut(s)	1014
BamHI	GGATCC	1 cut(s)	771
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	1 cut(s)	758
BbvI	GCAGC	5 cut(s)	166, 463, 494, 541, 930
BccI	CCATC	6 cut(s)	14, 50, 71, 128, 609, 1036
BceAI	ACGGC	1 cut(s)	1025
BciT130I	CCWGG	2 cut(s)	288, 534
BclI	TGATCA	1 cut(s)	627
BfmI	CTRYAG	2 cut(s)	777, 930
BfoI	RGCGCY	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	551
BisI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
BlsI	GCNGC	5 cut(s)	181, 478, 509, 556, 945
BmcAI	AGTACT	1 cut(s)	765
Bme1390I	CCNGG	2 cut(s)	288, 534
Bme18I	GGWCC	1 cut(s)	728
BmeT110I	CYCGRG	2 cut(s)	829, 1034
BmgT120I	GGNCC	2 cut(s)	664, 728
BmiI	GGNNCC	3 cut(s)	292, 665, 773
BmrFI	CCNGG	2 cut(s)	288, 534
BmsI	GCATC	2 cut(s)	658, 994
Bpu14I	TTCGAA	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	4 cut(s)	356, 713, 828, 938
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 264
Bse118I	RCCGGY	1 cut(s)	545
Bse21I	CCTNAGG	1 cut(s)	1014
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	288, 534
BseDI	CCNNGG	4 cut(s)	356, 713, 828, 938
BseGI	GGATG	5 cut(s)	61, 139, 649, 823, 1123
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	52, 264
BseMII	CTCAG	2 cut(s)	249, 1005
BseXI	GCAGC	5 cut(s)	166, 463, 494, 541, 930
Bsh1236I	CGCG	1 cut(s)	865
BshFI	GGCC	3 cut(s)	666, 1012, 1019
BshNI	GGYRCC	1 cut(s)	290
BsiHKCI	CYCGRG	2 cut(s)	829, 1034
BsiSI	CCGG	1 cut(s)	546
BslI	CCNNNNNNNGG	2 cut(s)	52, 264
BsnI	GGCC	3 cut(s)	666, 1012, 1019
BsoBI	CYCGRG	2 cut(s)	829, 1034
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp143I	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
Bsp19I	CCATGG	1 cut(s)	938
BspANI	GGCC	3 cut(s)	666, 1012, 1019
BspCNI	CTCAG	2 cut(s)	248, 1006
BspFNI	CGCG	1 cut(s)	865
BspHI	TCATGA	2 cut(s)	885, 949
BspLI	GGNNCC	3 cut(s)	292, 665, 773
BspPI	GGATC	3 cut(s)	766, 779, 1048
BspT104I	TTCGAA	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	4 cut(s)	356, 713, 828, 938
BssMI	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
BssT1I	CCWWGG	3 cut(s)	356, 713, 938
Bst2UI	CCWGG	2 cut(s)	288, 534
Bst4CI	ACNGT	1 cut(s)	501
BstBI	TTCGAA	1 cut(s)	174
BstDEI	CTNAG	3 cut(s)	235, 412, 1014
BstDSI	CCRYGG	1 cut(s)	938
BstF5I	GGATG	5 cut(s)	61, 139, 649, 823, 1123
BstFNI	CGCG	1 cut(s)	865
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	6 cut(s)	443, 630, 774, 1047, 1056, 1093
BstMBI	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 551, 943, 1082
BstNI	CCWGG	2 cut(s)	288, 534
BstSCI	CCNGG	2 cut(s)	286, 532
BstSFI	CTRYAG	2 cut(s)	777, 930
BstUI	CGCG	1 cut(s)	865
BstV1I	GCAGC	5 cut(s)	166, 463, 494, 541, 930
BstX2I	RGATCY	2 cut(s)	771, 1053
BstYI	RGATCY	2 cut(s)	771, 1053
Bsu36I	CCTNAGG	1 cut(s)	1014
BsuRI	GGCC	3 cut(s)	666, 1012, 1019
BtgI	CCRYGG	1 cut(s)	938
BtsCI	GGATG	5 cut(s)	61, 139, 649, 823, 1123
BtsIMutI	CAGTG	2 cut(s)	269, 918
CciI	TCATGA	2 cut(s)	885, 949
CfoI	GCGC	1 cut(s)	283
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	2 cut(s)	664, 728
Csp6I	GTAC	4 cut(s)	60, 578, 764, 1102
CviAII	CATG	5 cut(s)	36, 886, 939, 950, 1058
CviQI	GTAC	4 cut(s)	60, 578, 764, 1102
DdeI	CTNAG	3 cut(s)	235, 412, 1014
DpnI	GATC	6 cut(s)	442, 629, 773, 1046, 1055, 1092
DpnII	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
DraI	TTTAAA	1 cut(s)	877
DraIII	CACNNNGTG	1 cut(s)	328
Eco130I	CCWWGG	3 cut(s)	356, 713, 938
Eco24I	GRGCYC	1 cut(s)	758
Eco47I	GGWCC	1 cut(s)	728
Eco47III	AGCGCT	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	597
Eco81I	CCTNAGG	1 cut(s)	1014
Eco88I	CYCGRG	2 cut(s)	829, 1034
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	286, 532
EcoT14I	CCWWGG	3 cut(s)	356, 713, 938
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	3 cut(s)	356, 713, 938
FaeI	CATG	5 cut(s)	39, 889, 942, 953, 1061
FatI	CATG	5 cut(s)	35, 885, 938, 949, 1057
FbaI	TGATCA	1 cut(s)	627
Fnu4HI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
FokI	GGATG	5 cut(s)	68, 146, 636, 810, 1130
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	666, 1012, 1019
HapII	CCGG	1 cut(s)	546
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	39, 889, 942, 953, 1061
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	3 cut(s)	404, 524, 901
HpaII	CCGG	1 cut(s)	546
HphI	GGTGA	3 cut(s)	440, 637, 971
Hpy188I	TCNGA	2 cut(s)	238, 820
Hpy188III	TCNNGA	9 cut(s)	444, 458, 653, 831, 886, 950, 1034, 1036, 1088
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	6 cut(s)	182, 216, 270, 649, 985, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 551, 943, 1082
HpyF3I	CTNAG	3 cut(s)	235, 412, 1014
Hsp92II	CATG	5 cut(s)	39, 889, 942, 953, 1061
HspAI	GCGC	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	627
Kzo9I	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
Lsp1109I	GCAGC	5 cut(s)	166, 463, 494, 541, 930
LweI	GCATC	2 cut(s)	658, 994
MaeIII	GTNAC	3 cut(s)	320, 428, 538
MalI	GATC	6 cut(s)	442, 629, 773, 1046, 1055, 1092
MboI	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
MboII	GAAGA	2 cut(s)	533, 1085
MflI	RGATCY	2 cut(s)	771, 1053
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	9 cut(s)	26, 227, 303, 378, 720, 980, 1021, 1071, 1109
MmeI	TCCRAC	3 cut(s)	139, 377, 878
MseI	TTAA	8 cut(s)	20, 98, 230, 306, 488, 738, 876, 1131
MslI	CAYNNNNRTG	2 cut(s)	75, 315
MspA1I	CMGCKG	1 cut(s)	507
MspI	CCGG	1 cut(s)	546
MspR9I	CCNGG	2 cut(s)	288, 534
MvaI	CCWGG	2 cut(s)	288, 534
MvnI	CGCG	1 cut(s)	865
MwoI	GCNNNNNNNGC	4 cut(s)	185, 551, 943, 1082
NcoI	CCATGG	1 cut(s)	938
NdeII	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
NlaIII	CATG	5 cut(s)	39, 889, 942, 953, 1061
NlaIV	GGNNCC	3 cut(s)	292, 665, 773
NmuCI	GTSAC	3 cut(s)	320, 428, 538
NspV	TTCGAA	1 cut(s)	174
PaeR7I	CTCGAG	1 cut(s)	1034
PagI	TCATGA	2 cut(s)	885, 949
PfeI	GAWTC	3 cut(s)	404, 524, 901
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	5 cut(s)	181, 478, 509, 556, 945
PshBI	ATTAAT	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	286, 532
PspGI	CCWGG	2 cut(s)	286, 532
PspN4I	GGNNCC	3 cut(s)	292, 665, 773
PspPI	GGNCC	2 cut(s)	664, 728
PsuI	RGATCY	2 cut(s)	771, 1053
PvuII	CAGCTG	1 cut(s)	507
RsaI	GTAC	4 cut(s)	61, 579, 765, 1103
RsaNI	GTAC	4 cut(s)	60, 578, 764, 1102
RseI	CAYNNNNRTG	2 cut(s)	75, 315
SaqAI	TTAA	8 cut(s)	20, 98, 230, 306, 488, 738, 876, 1131
SatI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
Sau3AI	GATC	6 cut(s)	440, 627, 771, 1044, 1053, 1090
Sau96I	GGNCC	2 cut(s)	664, 728
ScaI	AGTACT	1 cut(s)	765
ScrFI	CCNGG	2 cut(s)	288, 534
SduI	GDGCHC	1 cut(s)	758
SfaNI	GCATC	2 cut(s)	658, 994
SfcI	CTRYAG	2 cut(s)	777, 930
Sfr274I	CTCGAG	1 cut(s)	1034
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	728
SlaI	CTCGAG	1 cut(s)	1034
SmiMI	CAYNNNNRTG	2 cut(s)	75, 315
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
Sse9I	AATT	9 cut(s)	26, 227, 303, 378, 720, 980, 1021, 1071, 1109
SspI	AATATT	2 cut(s)	465, 493
StyD4I	CCNGG	2 cut(s)	286, 532
StyI	CCWWGG	3 cut(s)	356, 713, 938
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	3 cut(s)	174, 1035, 1047
TasI	AATT	9 cut(s)	26, 227, 303, 378, 720, 980, 1021, 1071, 1109
TatI	WGTACW	2 cut(s)	763, 1101
TfiI	GAWTC	3 cut(s)	404, 524, 901
Tru1I	TTAA	8 cut(s)	20, 98, 230, 306, 488, 738, 876, 1131
Tru9I	TTAA	8 cut(s)	20, 98, 230, 306, 488, 738, 876, 1131
TscAI	CASTG	2 cut(s)	269, 925
TseFI	GTSAC	3 cut(s)	320, 428, 538
TseI	GCWGC	5 cut(s)	179, 476, 507, 554, 943
Tsp45I	GTSAC	3 cut(s)	320, 428, 538
TspDTI	ATGAA	3 cut(s)	24, 377, 938
TspRI	CASTG	2 cut(s)	269, 925
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	728
VspI	ATTAAT	1 cut(s)	230
XapI	RAATTY	2 cut(s)	378, 1109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	711
XhoI	CTCGAG	1 cut(s)	1034
ZrmI	AGTACT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.