Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Forward (+)

4352941 .. 4358487

Gene Structure 5547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031356

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTCCATCGCAGAGCCATTAAAGAAATTAGTTTCATGTGTTATCCTTGATTTGGATGATGGCATAGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAGTATGGAAAGAAATGGGATGGAAGGGAACTTCAAAAGATAGTTGGAAAATCACCACTCGAAGTTGCAGCTGCTATTGTGGAGGATTATGGGCTATCTTGCACAACGAGTGAATTAATCTCAGAGCTAAACCCAATGTTCTCCACTCAGTGGTGCAACATCAAAGCGCTTCCAGGTGCCAATCGGTTAATTAAGCATTTGAGTGGTCACAGAGTGCCAATAGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAGTTTCTTTTCATCAGGGTTGGAAAGAATCCTTCTTAGTCATCATTGGAGGTGACGAAGTAAGATCAGGAAAGCAATCTCCTGAAATATTCCTTGAAACTGCTAAAAGATTAAATATTGAACCGTCCAGATGCCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCTGGTAAGGCTGCTGGAATGGAGGTAGTTGCTGTGCCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACTTGACTTGCATCCTGAAAAGTGGGGCCTACCTCATTTCAAAGATTGGATGAAAGACACTTTACCAATAGAACCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGTTGTTTCATTTTGTTATCATAACAAGGGGGTTATCATCTTTTATCTAACTAATCTATCCACCGCGCAATATTCAACACTCCTTTCAGAACATCCCTCGAGGGTATATTTCGGTTGGGCTGGATTACCAACGCGAGGTGTCTTTAAAATGGAGCCATGGCTGCTTCATGATTCTGATGAGGATTTCTATGGGGAGGAATTGCATCTTATCATAGTTGGCTACATACGGCCTGAGGCCAATTTCCCAACCCTCGAGAGCTTGATCGAAAAGATCCATGAGGACCGGAAAATTGCAGAGGAAGCTCTCGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAAGCCCTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

375

Amino Acids

41.74

Weight (kDa)

5.81

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	14 - 187	2.1e-16	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	86 - 181	1.9e-18	haloacid dehalogenase-like hydrolase
Flavokinase	PF01687	231 - 355	3.8e-17	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	859
AccB1I	GGYRCC	1 cut(s)	272
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccII	CGCG	2 cut(s)	827, 895
AciI	CCGC	1 cut(s)	825
AclWI	GGATC	3 cut(s)	748, 761, 1027
AcsI	RAATTY	1 cut(s)	1088
AcuI	CTGAAG	1 cut(s)	579
AdeI	CACNNNGTG	2 cut(s)	246, 310
AfaI	GTAC	2 cut(s)	747, 1082
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	3 cut(s)	52, 246, 896
AgsI	TTSAA	8 cut(s)	131, 330, 455, 479, 503, 661, 837, 1093
AjnI	CCWGG	2 cut(s)	268, 514
AluBI	AGCT	5 cut(s)	167, 223, 527, 1020, 1064
AluI	AGCT	5 cut(s)	167, 223, 527, 1020, 1064
AlwI	GGATC	3 cut(s)	748, 761, 1027
Ama87I	CYCGRG	2 cut(s)	859, 1013
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	3 cut(s)	646, 989, 996
ApeKI	GCWGC	4 cut(s)	164, 167, 536, 922
ApoI	RAATTY	1 cut(s)	1088
ArsI	GACNNNNNNTTYG	2 cut(s)	694, 726
AseI	ATTAAT	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	265, 829
AspS9I	GGNCC	3 cut(s)	646, 710, 1042
AsuHPI	GGTGA	3 cut(s)	141, 422, 619
AvaI	CYCGRG	2 cut(s)	859, 1013
AvaII	GGWCC	2 cut(s)	710, 1042
AxyI	CCTNAGG	1 cut(s)	993
BaeGI	GKGCMC	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	753
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	740
BbvI	GCAGC	4 cut(s)	154, 176, 523, 909
BccI	CCATC	4 cut(s)	14, 53, 110, 591
BceAI	ACGGC	1 cut(s)	1004
BciT130I	CCWGG	2 cut(s)	270, 516
BclI	TGATCA	1 cut(s)	609
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	266
BisI	GCNGC	4 cut(s)	165, 168, 537, 923
BlsI	GCNGC	4 cut(s)	166, 169, 538, 924
BmcAI	AGTACT	1 cut(s)	747
Bme1390I	CCNGG	2 cut(s)	270, 516
Bme18I	GGWCC	2 cut(s)	710, 1042
BmeT110I	CYCGRG	2 cut(s)	859, 1013
BmgT120I	GGNCC	3 cut(s)	646, 710, 1042
BmiI	GGNNCC	4 cut(s)	274, 647, 755, 915
BmrFI	CCNGG	2 cut(s)	270, 516
BmsI	GCATC	3 cut(s)	479, 640, 973
BsaAI	YACGTR	1 cut(s)	1122
BsaJI	CCNNGG	3 cut(s)	338, 695, 917
BsaWI	WCCGGW	1 cut(s)	1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 246, 896
Bse21I	CCTNAGG	1 cut(s)	993
BseBI	CCWGG	2 cut(s)	270, 516
BseDI	CCNNGG	3 cut(s)	338, 695, 917
BseGI	GGATG	6 cut(s)	61, 121, 631, 675, 853, 1102
BseLI	CCNNNNNNNGG	3 cut(s)	52, 246, 896
BseMII	CTCAG	3 cut(s)	231, 257, 984
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	4 cut(s)	154, 176, 523, 909
Bsh1236I	CGCG	2 cut(s)	827, 895
BshFI	GGCC	3 cut(s)	648, 991, 998
BshNI	GGYRCC	1 cut(s)	272
BsiHKCI	CYCGRG	2 cut(s)	859, 1013
BsiSI	CCGG	1 cut(s)	1045
BslI	CCNNNNNNNGG	3 cut(s)	52, 246, 896
BsnI	GGCC	3 cut(s)	648, 991, 998
BsoBI	CYCGRG	2 cut(s)	859, 1013
Bsp1286I	GDGCHC	2 cut(s)	564, 740
Bsp143I	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
Bsp19I	CCATGG	1 cut(s)	917
BspACI	CCGC	1 cut(s)	825
BspANI	GGCC	3 cut(s)	648, 991, 998
BspCNI	CTCAG	3 cut(s)	230, 256, 985
BspFNI	CGCG	2 cut(s)	827, 895
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	4 cut(s)	274, 647, 755, 915
BspPI	GGATC	3 cut(s)	748, 761, 1027
BspT107I	GGYRCC	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	338, 695, 917
BssMI	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
BssT1I	CCWWGG	3 cut(s)	338, 695, 917
Bst2UI	CCWGG	2 cut(s)	270, 516
Bst4CI	ACNGT	2 cut(s)	483, 763
BstBAI	YACGTR	1 cut(s)	1122
BstDEI	CTNAG	4 cut(s)	217, 243, 394, 993
BstDSI	CCRYGG	1 cut(s)	917
BstF5I	GGATG	6 cut(s)	61, 121, 631, 675, 853, 1102
BstFNI	CGCG	2 cut(s)	827, 895
BstH2I	RGCGCY	1 cut(s)	266
BstHHI	GCGC	2 cut(s)	265, 829
BstKTI	GATC	6 cut(s)	425, 612, 756, 1026, 1035, 1072
BstMBI	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
BstMWI	GCNNNNNNNGC	4 cut(s)	533, 568, 922, 1061
BstNI	CCWGG	2 cut(s)	270, 516
BstSCI	CCNGG	2 cut(s)	268, 514
BstSFI	CTRYAG	1 cut(s)	759
BstSLI	GKGCMC	1 cut(s)	564
BstUI	CGCG	2 cut(s)	827, 895
BstV1I	GCAGC	4 cut(s)	154, 176, 523, 909
BstX2I	RGATCY	2 cut(s)	753, 1032
BstYI	RGATCY	2 cut(s)	753, 1032
Bsu36I	CCTNAGG	1 cut(s)	993
BsuRI	GGCC	3 cut(s)	648, 991, 998
BtgI	CCRYGG	1 cut(s)	917
BtsCI	GGATG	6 cut(s)	61, 121, 631, 675, 853, 1102
BtsIMutI	CAGTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	2 cut(s)	265, 829
Cfr13I	GGNCC	3 cut(s)	646, 710, 1042
Csp6I	GTAC	2 cut(s)	746, 1081
CviAII	CATG	4 cut(s)	36, 918, 929, 1037
CviQI	GTAC	2 cut(s)	746, 1081
DdeI	CTNAG	4 cut(s)	217, 243, 394, 993
DpnI	GATC	6 cut(s)	424, 611, 755, 1025, 1034, 1071
DpnII	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
DraI	TTTAAA	1 cut(s)	907
DraIII	CACNNNGTG	2 cut(s)	246, 310
Eco130I	CCWWGG	3 cut(s)	338, 695, 917
Eco24I	GRGCYC	1 cut(s)	740
Eco47I	GGWCC	2 cut(s)	710, 1042
Eco47III	AGCGCT	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	579
Eco81I	CCTNAGG	1 cut(s)	993
Eco88I	CYCGRG	2 cut(s)	859, 1013
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	2 cut(s)	268, 514
EcoT14I	CCWWGG	3 cut(s)	338, 695, 917
EcoT38I	GRGCYC	1 cut(s)	740
ErhI	CCWWGG	3 cut(s)	338, 695, 917
FaeI	CATG	4 cut(s)	39, 921, 932, 1040
FatI	CATG	4 cut(s)	35, 917, 928, 1036
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	165, 168, 537, 923
FokI	GGATG	6 cut(s)	68, 128, 618, 682, 840, 1109
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	4 cut(s)	165, 168, 537, 923
GlaI	GCGC	2 cut(s)	264, 828
GluI	GCNGC	4 cut(s)	165, 168, 537, 923
HaeII	RGCGCY	1 cut(s)	266
HaeIII	GGCC	3 cut(s)	648, 991, 998
HapII	CCGG	1 cut(s)	1045
HhaI	GCGC	2 cut(s)	265, 829
Hin1II	CATG	4 cut(s)	39, 921, 932, 1040
Hin6I	GCGC	2 cut(s)	263, 827
HinP1I	GCGC	2 cut(s)	263, 827
HinfI	GANTC	3 cut(s)	386, 506, 932
HpaII	CCGG	1 cut(s)	1045
HphI	GGTGA	3 cut(s)	141, 422, 619
Hpy188I	TCNGA	3 cut(s)	220, 850, 937
Hpy188III	TCNNGA	7 cut(s)	426, 440, 486, 635, 929, 1015, 1067
HpyAV	CCTTC	2 cut(s)	114, 400
HpyCH4III	ACNGT	2 cut(s)	483, 763
HpyCH4IV	ACGT	1 cut(s)	1121
HpyCH4V	TGCA	6 cut(s)	164, 198, 252, 631, 964, 1055
HpyF10VI	GCNNNNNNNGC	4 cut(s)	533, 568, 922, 1061
HpyF3I	CTNAG	4 cut(s)	217, 243, 394, 993
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	4 cut(s)	39, 921, 932, 1040
HspAI	GCGC	2 cut(s)	263, 827
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
LmnI	GCTCC	1 cut(s)	913
Lsp1109I	GCAGC	4 cut(s)	154, 176, 523, 909
LweI	GCATC	3 cut(s)	479, 640, 973
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	3 cut(s)	302, 410, 520
MalI	GATC	6 cut(s)	424, 611, 755, 1025, 1034, 1071
MboI	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
MboII	GAAGA	2 cut(s)	515, 1064
MflI	RGATCY	2 cut(s)	753, 1032
MhlI	GDGCHC	2 cut(s)	564, 740
MluCI	AATT	8 cut(s)	26, 209, 285, 702, 959, 1000, 1050, 1088
MmeI	TCCRAC	2 cut(s)	121, 359
MseI	TTAA	9 cut(s)	20, 80, 212, 284, 288, 470, 720, 906, 1110
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	2 cut(s)	167, 527
MspI	CCGG	1 cut(s)	1045
MspR9I	CCNGG	2 cut(s)	270, 516
MvaI	CCWGG	2 cut(s)	270, 516
MvnI	CGCG	2 cut(s)	827, 895
MwoI	GCNNNNNNNGC	4 cut(s)	533, 568, 922, 1061
NcoI	CCATGG	1 cut(s)	917
NdeII	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
NlaIII	CATG	4 cut(s)	39, 921, 932, 1040
NlaIV	GGNNCC	4 cut(s)	274, 647, 755, 915
NmuCI	GTSAC	3 cut(s)	302, 410, 520
PacI	TTAATTAA	1 cut(s)	288
PaeR7I	CTCGAG	2 cut(s)	859, 1013
PagI	TCATGA	1 cut(s)	928
PfeI	GAWTC	3 cut(s)	386, 506, 932
PflMI	CCANNNNNTGG	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	166, 169, 538, 924
Ppu21I	YACGTR	1 cut(s)	1122
PshBI	ATTAAT	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	268, 514
PspGI	CCWGG	2 cut(s)	268, 514
PspN4I	GGNNCC	4 cut(s)	274, 647, 755, 915
PspPI	GGNCC	3 cut(s)	646, 710, 1042
PspXI	VCTCGAGB	1 cut(s)	859
PsuI	RGATCY	2 cut(s)	753, 1032
PvuII	CAGCTG	2 cut(s)	167, 527
RsaI	GTAC	2 cut(s)	747, 1082
RsaNI	GTAC	2 cut(s)	746, 1081
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	9 cut(s)	20, 80, 212, 284, 288, 470, 720, 906, 1110
SatI	GCNGC	4 cut(s)	165, 168, 537, 923
Sau3AI	GATC	6 cut(s)	422, 609, 753, 1023, 1032, 1069
Sau96I	GGNCC	3 cut(s)	646, 710, 1042
ScaI	AGTACT	1 cut(s)	747
ScrFI	CCNGG	2 cut(s)	270, 516
SduI	GDGCHC	2 cut(s)	564, 740
SfaNI	GCATC	3 cut(s)	479, 640, 973
SfcI	CTRYAG	1 cut(s)	759
Sfr274I	CTCGAG	2 cut(s)	859, 1013
SinI	GGWCC	2 cut(s)	710, 1042
SlaI	CTCGAG	2 cut(s)	859, 1013
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	859, 1013
SmoI	CTYRAG	2 cut(s)	859, 1013
Sse9I	AATT	8 cut(s)	26, 209, 285, 702, 959, 1000, 1050, 1088
SsiI	CCGC	1 cut(s)	825
SspI	AATATT	3 cut(s)	447, 475, 833
StyD4I	CCNGG	2 cut(s)	268, 514
StyI	CCWWGG	3 cut(s)	338, 695, 917
TaaI	ACNGT	2 cut(s)	483, 763
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	5 cut(s)	156, 860, 1014, 1026, 1068
TasI	AATT	8 cut(s)	26, 209, 285, 702, 959, 1000, 1050, 1088
TatI	WGTACW	2 cut(s)	745, 1080
TfiI	GAWTC	3 cut(s)	386, 506, 932
Tru1I	TTAA	9 cut(s)	20, 80, 212, 284, 288, 470, 720, 906, 1110
Tru9I	TTAA	9 cut(s)	20, 80, 212, 284, 288, 470, 720, 906, 1110
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	3 cut(s)	302, 410, 520
TseI	GCWGC	4 cut(s)	164, 167, 536, 922
Tsp45I	GTSAC	3 cut(s)	302, 410, 520
TspDTI	ATGAA	5 cut(s)	24, 359, 686, 759, 917
TspRI	CASTG	1 cut(s)	251
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	710, 1042
VspI	ATTAAT	1 cut(s)	212
XapI	RAATTY	1 cut(s)	1088
XcmI	CCANNNNNNNNNTGG	1 cut(s)	693
XhoI	CTCGAG	2 cut(s)	859, 1013
ZrmI	AGTACT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.