Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

4122303 .. 4126727

Gene Structure 4425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG049300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGTCTTGAAGATGTCCATCGCAGAGCCATTAAAGAAATTAGTTTCATGTGTTATCCTTGATTTGGATGGTACACTGCTATATACAGATGGCATAATAAGTGATGTTTTAAGAGTATATTTGGGGAAGTATGGAAAGAAATGGGATGGGAGGGAAGTTCAAAAGATAGTTGGAAAAACACCATTTGAAGCTGCAACTGCTATTGTGGAGGATTATGGGCTATCTTGCACAACGAGTGAATTAATCTCAGAGCTAAACCCAATGTTCTCCAATCAGTGGTGCAACATCAAAGCGCTTCCAGGTGCCAATCGGCTAATTAAACATTTGAGTGGTCACAGAGTGCCAATAGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAATTTCTTTTCATCAGGGTTGGAAAGAATCCTTCTTAGTCATCATTGGAGGTGACGAAGTAAGATCAGGAAAGCCATCTCCTGAAATATTCCTTGAAGCTGCTAAAAGATTAAATATTGAACCGTCCAGCTGCCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCCGGTAAGGCTGCTGGAATGGAGGTAGTTGCTGTACCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACTTGATTTGCATCCTGAAAAGTGGGGCCTACCTCCTTTCAAAGATTGGATAAAAGACACTTTACCAATAGAACCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGAACATCCCTCGGGAGTATATTTCGGTTGGGCTGGATTACGAACGCGAGGTGTCTTTAAAATGGTCATGAGTATTGGTTGGAATCCTTATTTCAACAACACTGAAAAGACTTTAGAGCCATGGCTACTTCATGACTTTGGTGAGGACTTCTATGGGGAGGAATTGCATCTTATCATAGTTGGCTACATACGGCCTGAGGCCAATTTCCCATCTCTCGAGAGCTTGATCGAAAAGATCCATGAGGACAGGAAAATTGCAGAGGAAGCTCTTGATCTTCCAATGTACTCAAAATTCAAGGATGACCCATATCTTAAAAGCCCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

372

Amino Acids

41.43

Weight (kDa)

5.68

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	16 - 191	1.4e-23	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	18 - 197	5.2e-24	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	153 - 199	8.9e-07	HAD-hyrolase-like
Flavokinase	PF01687	241 - 353	2.3e-29	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccII	CGCG	1 cut(s)	838
AclWI	GGATC	3 cut(s)	778, 791, 1021
AcsI	RAATTY	2 cut(s)	390, 1082
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	4 cut(s)	73, 591, 777, 1076
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	64, 276
AjnI	CCWGG	2 cut(s)	298, 544
AluBI	AGCT	6 cut(s)	191, 253, 488, 519, 1014, 1058
AluI	AGCT	6 cut(s)	191, 253, 488, 519, 1014, 1058
AlwI	GGATC	3 cut(s)	778, 791, 1021
Ama87I	CYCGRG	2 cut(s)	802, 1007
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	3 cut(s)	676, 983, 990
ApeKI	GCWGC	4 cut(s)	191, 488, 519, 566
ApoI	RAATTY	2 cut(s)	390, 1082
ArsI	GACNNNNNNTTYG	2 cut(s)	724, 756
AseI	ATTAAT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	676, 740
AsuHPI	GGTGA	3 cut(s)	452, 649, 944
AvaI	CYCGRG	2 cut(s)	802, 1007
AvaII	GGWCC	1 cut(s)	740
AxyI	CCTNAGG	1 cut(s)	987
BamHI	GGATCC	1 cut(s)	783
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	770
BbvI	GCAGC	4 cut(s)	178, 475, 506, 553
BccI	CCATC	7 cut(s)	26, 62, 83, 140, 472, 621, 1009
BceAI	ACGGC	1 cut(s)	998
BciT130I	CCWGG	2 cut(s)	300, 546
BclI	TGATCA	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	789
BfoI	RGCGCY	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	192, 489, 520, 567
BlsI	GCNGC	4 cut(s)	193, 490, 521, 568
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	2 cut(s)	300, 546
Bme18I	GGWCC	1 cut(s)	740
BmeT110I	CYCGRG	2 cut(s)	802, 1007
BmgT120I	GGNCC	2 cut(s)	676, 740
BmiI	GGNNCC	3 cut(s)	304, 677, 785
BmrFI	CCNGG	2 cut(s)	300, 546
BmsI	GCATC	2 cut(s)	670, 967
BsaBI	GATNNNNATC	2 cut(s)	17, 660
BsaJI	CCNNGG	4 cut(s)	368, 725, 801, 911
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 276
Bse118I	RCCGGY	1 cut(s)	557
Bse21I	CCTNAGG	1 cut(s)	987
Bse8I	GATNNNNATC	2 cut(s)	17, 660
BseBI	CCWGG	2 cut(s)	300, 546
BseDI	CCNNGG	4 cut(s)	368, 725, 801, 911
BseGI	GGATG	5 cut(s)	73, 151, 661, 796, 1096
BseJI	GATNNNNATC	2 cut(s)	17, 660
BseLI	CCNNNNNNNGG	2 cut(s)	64, 276
BseMII	CTCAG	2 cut(s)	261, 978
BseXI	GCAGC	4 cut(s)	178, 475, 506, 553
Bsh1236I	CGCG	1 cut(s)	838
BshFI	GGCC	3 cut(s)	678, 985, 992
BshNI	GGYRCC	1 cut(s)	302
BsiHKCI	CYCGRG	2 cut(s)	802, 1007
BsiSI	CCGG	1 cut(s)	558
BslI	CCNNNNNNNGG	2 cut(s)	64, 276
BsnI	GGCC	3 cut(s)	678, 985, 992
BsoBI	CYCGRG	2 cut(s)	802, 1007
Bsp1286I	GDGCHC	1 cut(s)	770
Bsp143I	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
Bsp19I	CCATGG	1 cut(s)	911
BspANI	GGCC	3 cut(s)	678, 985, 992
BspCNI	CTCAG	2 cut(s)	260, 979
BspFNI	CGCG	1 cut(s)	838
BspHI	TCATGA	2 cut(s)	858, 922
BspLI	GGNNCC	3 cut(s)	304, 677, 785
BspPI	GGATC	3 cut(s)	778, 791, 1021
BspT107I	GGYRCC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	4 cut(s)	368, 725, 801, 911
BssMI	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
BssT1I	CCWWGG	3 cut(s)	368, 725, 911
Bst2UI	CCWGG	2 cut(s)	300, 546
Bst4CI	ACNGT	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	247, 424, 987
BstDSI	CCRYGG	1 cut(s)	911
BstF5I	GGATG	5 cut(s)	73, 151, 661, 796, 1096
BstFNI	CGCG	1 cut(s)	838
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	6 cut(s)	455, 642, 786, 1020, 1029, 1066
BstMBI	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 563, 1055
BstNI	CCWGG	2 cut(s)	300, 546
BstSCI	CCNGG	2 cut(s)	298, 544
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	1 cut(s)	838
BstV1I	GCAGC	4 cut(s)	178, 475, 506, 553
BstX2I	RGATCY	2 cut(s)	783, 1026
BstYI	RGATCY	2 cut(s)	783, 1026
Bsu36I	CCTNAGG	1 cut(s)	987
BsuRI	GGCC	3 cut(s)	678, 985, 992
BtgI	CCRYGG	1 cut(s)	911
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	5 cut(s)	73, 151, 661, 796, 1096
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	3 cut(s)	74, 281, 891
CciI	TCATGA	2 cut(s)	858, 922
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	676, 740
Csp6I	GTAC	4 cut(s)	72, 590, 776, 1075
CviAII	CATG	5 cut(s)	48, 859, 912, 923, 1031
CviQI	GTAC	4 cut(s)	72, 590, 776, 1075
DdeI	CTNAG	3 cut(s)	247, 424, 987
DpnI	GATC	6 cut(s)	454, 641, 785, 1019, 1028, 1065
DpnII	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
DraI	TTTAAA	1 cut(s)	850
DraIII	CACNNNGTG	1 cut(s)	340
Eco130I	CCWWGG	3 cut(s)	368, 725, 911
Eco24I	GRGCYC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	740
Eco47III	AGCGCT	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	987
Eco88I	CYCGRG	2 cut(s)	802, 1007
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	2 cut(s)	298, 544
EcoT14I	CCWWGG	3 cut(s)	368, 725, 911
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	3 cut(s)	368, 725, 911
FaeI	CATG	5 cut(s)	51, 862, 915, 926, 1034
FatI	CATG	5 cut(s)	47, 858, 911, 922, 1030
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	192, 489, 520, 567
FokI	GGATG	5 cut(s)	80, 158, 648, 783, 1103
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	4 cut(s)	192, 489, 520, 567
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	4 cut(s)	192, 489, 520, 567
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	678, 985, 992
HapII	CCGG	1 cut(s)	558
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	5 cut(s)	51, 862, 915, 926, 1034
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	3 cut(s)	416, 536, 874
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	3 cut(s)	452, 649, 944
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	6 cut(s)	194, 228, 282, 661, 958, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 563, 1055
HpyF3I	CTNAG	3 cut(s)	247, 424, 987
Hsp92II	CATG	5 cut(s)	51, 862, 915, 926, 1034
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
Lsp1109I	GCAGC	4 cut(s)	178, 475, 506, 553
LweI	GCATC	2 cut(s)	670, 967
MaeIII	GTNAC	3 cut(s)	332, 440, 550
MalI	GATC	6 cut(s)	454, 641, 785, 1019, 1028, 1065
MboI	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
MboII	GAAGA	3 cut(s)	22, 545, 1058
MflI	RGATCY	2 cut(s)	783, 1026
MhlI	GDGCHC	1 cut(s)	770
MluCI	AATT	9 cut(s)	38, 239, 315, 390, 732, 953, 994, 1044, 1082
MmeI	TCCRAC	3 cut(s)	151, 389, 851
MseI	TTAA	8 cut(s)	32, 110, 242, 318, 500, 750, 849, 1104
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	519
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	2 cut(s)	300, 546
MvaI	CCWGG	2 cut(s)	300, 546
MvnI	CGCG	1 cut(s)	838
MwoI	GCNNNNNNNGC	3 cut(s)	197, 563, 1055
NcoI	CCATGG	1 cut(s)	911
NdeII	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
NlaIII	CATG	5 cut(s)	51, 862, 915, 926, 1034
NlaIV	GGNNCC	3 cut(s)	304, 677, 785
NmuCI	GTSAC	3 cut(s)	332, 440, 550
PaeR7I	CTCGAG	1 cut(s)	1007
PagI	TCATGA	2 cut(s)	858, 922
PfeI	GAWTC	3 cut(s)	416, 536, 874
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	193, 490, 521, 568
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	298, 544
PspGI	CCWGG	2 cut(s)	298, 544
PspN4I	GGNNCC	3 cut(s)	304, 677, 785
PspPI	GGNCC	2 cut(s)	676, 740
PsuI	RGATCY	2 cut(s)	783, 1026
PvuII	CAGCTG	1 cut(s)	519
RsaI	GTAC	4 cut(s)	73, 591, 777, 1076
RsaNI	GTAC	4 cut(s)	72, 590, 776, 1075
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	8 cut(s)	32, 110, 242, 318, 500, 750, 849, 1104
SatI	GCNGC	4 cut(s)	192, 489, 520, 567
Sau3AI	GATC	6 cut(s)	452, 639, 783, 1017, 1026, 1063
Sau96I	GGNCC	2 cut(s)	676, 740
ScaI	AGTACT	1 cut(s)	777
ScrFI	CCNGG	2 cut(s)	300, 546
SduI	GDGCHC	1 cut(s)	770
SfaNI	GCATC	2 cut(s)	670, 967
SfcI	CTRYAG	1 cut(s)	789
Sfr274I	CTCGAG	1 cut(s)	1007
SinI	GGWCC	1 cut(s)	740
SlaI	CTCGAG	1 cut(s)	1007
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	1007
SmoI	CTYRAG	1 cut(s)	1007
Sse9I	AATT	9 cut(s)	38, 239, 315, 390, 732, 953, 994, 1044, 1082
SspI	AATATT	2 cut(s)	477, 505
StyD4I	CCNGG	2 cut(s)	298, 544
StyI	CCWWGG	3 cut(s)	368, 725, 911
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	2 cut(s)	1008, 1020
TasI	AATT	9 cut(s)	38, 239, 315, 390, 732, 953, 994, 1044, 1082
TatI	WGTACW	2 cut(s)	775, 1074
TfiI	GAWTC	3 cut(s)	416, 536, 874
Tru1I	TTAA	8 cut(s)	32, 110, 242, 318, 500, 750, 849, 1104
Tru9I	TTAA	8 cut(s)	32, 110, 242, 318, 500, 750, 849, 1104
TscAI	CASTG	3 cut(s)	81, 281, 898
TseFI	GTSAC	3 cut(s)	332, 440, 550
TseI	GCWGC	4 cut(s)	191, 488, 519, 566
Tsp45I	GTSAC	3 cut(s)	332, 440, 550
TspDTI	ATGAA	3 cut(s)	36, 389, 911
TspRI	CASTG	3 cut(s)	81, 281, 898
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	2 cut(s)	390, 1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XhoI	CTCGAG	1 cut(s)	1007
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.