Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008991.1

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

3169 .. 6252

Gene Structure 3084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008991.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgtccatcgcagagccattaaagaaattagtttcatgtgttatccttgatttggatggtactctactacacacagatggcataataagtgatgttttaagagtatatttggggaagtatggaaagaaatgggatgggagggaagttcaaaagatagttggaaaaacaccattggaagctgcaactgctattgtggaggattatgggctatcttgcacaacgagtgaattaatctcagagctaaacccaatgccaggtgtgacagccggtaaggctgctggaatgggggtagttgctgtaccctctctgccaaagcaatcccatctctatacttcagcagatgaggtgatcaactctctacttgatttgcatcctgaaaagtggggcctacctcctttcaaagattggataaaagacactttaccaatagaaccttggcaaattggtggtcctgtcattaagggatttggtcggggctcaaaagtacttgggatccctacagctaatctatccaccgagcgatattcaactctcctttcagaacatccctcgggagtatatttcggttgggctggattacgaacgcgaggtgtctttaaaatggtcatgagtattggttggaatccttatttcaacaacactgaaaagactatagagccatggctacttcatgactttggtgaggacttctatggggaggaattgcatcttatcatagttggctacatacggcctgaggccaatttcccatctctcgagagcttgatcgaaaagatccatgaggacaggaaaattgcagaggaagctcttgatcttccaatgtactcaaaattcaaggatgacccatatcttaaaaggccaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

288

Amino Acids

32.04

Weight (kDa)

5.45

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	586
AclWI	GGATC	3 cut(s)	487, 500, 769
AcsI	RAATTY	1 cut(s)	830
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	4 cut(s)	61, 300, 486, 824
AfiI	CCNNNNNNNGG	2 cut(s)	52, 254
AgsI	TTSAA	5 cut(s)	149, 400, 528, 634, 835
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	5 cut(s)	179, 241, 503, 762, 806
AluI	AGCT	5 cut(s)	179, 241, 503, 762, 806
AlwI	GGATC	3 cut(s)	487, 500, 769
Ama87I	CYCGRG	2 cut(s)	550, 755
AoxI	GGCC	4 cut(s)	385, 731, 738, 857
ApeKI	GCWGC	2 cut(s)	179, 275
ApoI	RAATTY	1 cut(s)	830
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AseI	ATTAAT	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	385, 449
AsuHPI	GGTGA	2 cut(s)	358, 692
AvaI	CYCGRG	2 cut(s)	550, 755
AvaII	GGWCC	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	735
BamHI	GGATCC	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	166, 262
BccI	CCATC	6 cut(s)	14, 50, 71, 128, 330, 757
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	498, 651
BglI	GCCNNNNNGGC	1 cut(s)	272
BisI	GCNGC	2 cut(s)	180, 276
BlsI	GCNGC	2 cut(s)	181, 277
BmcAI	AGTACT	1 cut(s)	486
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	2 cut(s)	550, 755
BmgT120I	GGNCC	2 cut(s)	385, 449
BmiI	GGNNCC	2 cut(s)	386, 494
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	379, 715
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	434, 549, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 254
Bse118I	RCCGGY	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	735
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	434, 549, 659
BseGI	GGATG	5 cut(s)	61, 139, 370, 544, 844
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	52, 254
BseMII	CTCAG	2 cut(s)	249, 726
BseXI	GCAGC	2 cut(s)	166, 262
Bsh1236I	CGCG	1 cut(s)	586
BshFI	GGCC	4 cut(s)	387, 733, 740, 859
BsiHKCI	CYCGRG	2 cut(s)	550, 755
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	52, 254
BsnI	GGCC	4 cut(s)	387, 733, 740, 859
BsoBI	CYCGRG	2 cut(s)	550, 755
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	5 cut(s)	348, 492, 765, 774, 811
Bsp19I	CCATGG	1 cut(s)	659
BspANI	GGCC	4 cut(s)	387, 733, 740, 859
BspCNI	CTCAG	2 cut(s)	248, 727
BspFNI	CGCG	1 cut(s)	586
BspHI	TCATGA	2 cut(s)	606, 670
BspLI	GGNNCC	2 cut(s)	386, 494
BspPI	GGATC	3 cut(s)	487, 500, 769
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	434, 549, 659
BssMI	GATC	5 cut(s)	348, 492, 765, 774, 811
BssT1I	CCWWGG	2 cut(s)	434, 659
Bst2UI	CCWGG	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	235, 735
BstDSI	CCRYGG	1 cut(s)	659
BstF5I	GGATG	5 cut(s)	61, 139, 370, 544, 844
BstFNI	CGCG	1 cut(s)	586
BstKTI	GATC	5 cut(s)	351, 495, 768, 777, 814
BstMBI	GATC	5 cut(s)	348, 492, 765, 774, 811
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 272, 803
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	2 cut(s)	498, 651
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	2 cut(s)	166, 262
BstX2I	RGATCY	2 cut(s)	492, 774
BstYI	RGATCY	2 cut(s)	492, 774
Bsu36I	CCTNAGG	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	387, 733, 740, 859
BtgI	CCRYGG	1 cut(s)	659
BtsCI	GGATG	5 cut(s)	61, 139, 370, 544, 844
BtsIMutI	CAGTG	1 cut(s)	639
CciI	TCATGA	2 cut(s)	606, 670
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	385, 449
Csp6I	GTAC	4 cut(s)	60, 299, 485, 823
CviAII	CATG	5 cut(s)	36, 607, 660, 671, 779
CviQI	GTAC	4 cut(s)	60, 299, 485, 823
DdeI	CTNAG	2 cut(s)	235, 735
DpnI	GATC	5 cut(s)	350, 494, 767, 776, 813
DpnII	GATC	5 cut(s)	348, 492, 765, 774, 811
DraI	TTTAAA	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	434, 659
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	1 cut(s)	318
Eco81I	CCTNAGG	1 cut(s)	735
Eco88I	CYCGRG	2 cut(s)	550, 755
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	434, 659
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	2 cut(s)	434, 659
FaeI	CATG	5 cut(s)	39, 610, 663, 674, 782
FatI	CATG	5 cut(s)	35, 606, 659, 670, 778
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	180, 276
FokI	GGATG	5 cut(s)	68, 146, 357, 531, 851
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	180, 276
GluI	GCNGC	2 cut(s)	180, 276
HaeIII	GGCC	4 cut(s)	387, 733, 740, 859
HapII	CCGG	1 cut(s)	267
Hin1II	CATG	5 cut(s)	39, 610, 663, 674, 782
HinfI	GANTC	1 cut(s)	622
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	358, 692
Hpy188I	TCNGA	2 cut(s)	238, 541
Hpy188III	TCNNGA	7 cut(s)	374, 552, 607, 671, 755, 757, 809
HpyCH4V	TGCA	5 cut(s)	182, 216, 370, 706, 797
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 272, 803
HpyF3I	CTNAG	2 cut(s)	235, 735
Hsp92II	CATG	5 cut(s)	39, 610, 663, 674, 782
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	5 cut(s)	348, 492, 765, 774, 811
LpnPI	CCDG	9 cut(s)	240, 264, 267, 280, 387, 465, 558, 747, 772
Lsp1109I	GCAGC	2 cut(s)	166, 262
LweI	GCATC	2 cut(s)	379, 715
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	5 cut(s)	350, 494, 767, 776, 813
MboI	GATC	5 cut(s)	348, 492, 765, 774, 811
MboII	GAAGA	1 cut(s)	806
MflI	RGATCY	2 cut(s)	492, 774
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	7 cut(s)	26, 227, 441, 701, 742, 792, 830
MmeI	TCCRAC	2 cut(s)	139, 599
MseI	TTAA	6 cut(s)	20, 98, 230, 459, 597, 852
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	586
MwoI	GCNNNNNNNGC	3 cut(s)	185, 272, 803
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	5 cut(s)	348, 492, 765, 774, 811
NlaIII	CATG	5 cut(s)	39, 610, 663, 674, 782
NlaIV	GGNNCC	2 cut(s)	386, 494
NmuCI	GTSAC	1 cut(s)	259
PaeR7I	CTCGAG	1 cut(s)	755
PagI	TCATGA	2 cut(s)	606, 670
PfeI	GAWTC	1 cut(s)	622
PkrI	GCNGC	2 cut(s)	181, 277
PshBI	ATTAAT	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	386, 494
PspPI	GGNCC	2 cut(s)	385, 449
PsuI	RGATCY	2 cut(s)	492, 774
RsaI	GTAC	4 cut(s)	61, 300, 486, 824
RsaNI	GTAC	4 cut(s)	60, 299, 485, 823
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	6 cut(s)	20, 98, 230, 459, 597, 852
SatI	GCNGC	2 cut(s)	180, 276
Sau3AI	GATC	5 cut(s)	348, 492, 765, 774, 811
Sau96I	GGNCC	2 cut(s)	385, 449
ScaI	AGTACT	1 cut(s)	486
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	479
SfaNI	GCATC	2 cut(s)	379, 715
SfcI	CTRYAG	2 cut(s)	498, 651
Sfr274I	CTCGAG	1 cut(s)	755
SinI	GGWCC	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	7 cut(s)	26, 227, 441, 701, 742, 792, 830
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	434, 659
TaqI	TCGA	2 cut(s)	756, 768
TasI	AATT	7 cut(s)	26, 227, 441, 701, 742, 792, 830
TatI	WGTACW	2 cut(s)	484, 822
TfiI	GAWTC	1 cut(s)	622
Tru1I	TTAA	6 cut(s)	20, 98, 230, 459, 597, 852
Tru9I	TTAA	6 cut(s)	20, 98, 230, 459, 597, 852
TscAI	CASTG	1 cut(s)	646
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	179, 275
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	24, 659
TspRI	CASTG	1 cut(s)	646
VpaK11BI	GGWCC	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	230
XapI	RAATTY	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	755
ZrmI	AGTACT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.