Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Forward (+)

90470799 .. 90475967

Gene Structure 5169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTCTTGAAGATGTCCATCGCAGAGCCATTAAAGAAATTAGTTTCGTGTGTTATCCTTGATTTGGATGGTACTCTACTACACACAGATGGCATAGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAATATGGAAAGAAATGGGATGGAAGGGAACTTCAAAAGATAGTTGGAAAAACACCACTCGAAGCTGCAGCTGCTATTGTGGAGGATTATGGGCTATCTTGCACAACGAGTGAATTAATCTCAGAGATAAACCCAATGTTCTCCACTCAGTGGTGCAACATCAAAGCGCTTCCAGGTGCCAATCGGCTAATTAAACATTTGAGTGGTCACAGAGTGCCAATAGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAATTTCTTTTCATCAGGGTTGGAAAGAATCCTTCTTAGTCATCATTGGAGGTGACGAAGTAAGATCAGGAAAGCCATCTCCTGAAATATTCCTTGAAGCCGCTAAAAGATTAAATATTGAACCGTCCAGCTGCCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCCGGTAAGGCTGCTGGAATGGAGGTAGTTGCTGTGCCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

213

Amino Acids

23.03

Weight (kDa)

6.22

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	16 - 191	6.7e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	18 - 197	5.8e-25	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	153 - 198	9.3e-07	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	2 cut(s)	276, 340
AfaI	GTAC	1 cut(s)	73
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	64, 276
AgsI	TTSAA	6 cut(s)	10, 161, 360, 485, 509, 533
AjnI	CCWGG	2 cut(s)	298, 544
AluBI	AGCT	3 cut(s)	191, 197, 519
AluI	AGCT	3 cut(s)	191, 197, 519
Aor51HI	AGCGCT	1 cut(s)	294
ApeKI	GCWGC	5 cut(s)	191, 194, 197, 519, 566
ApoI	RAATTY	1 cut(s)	390
AseI	ATTAAT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	302
BbvI	GCAGC	5 cut(s)	178, 184, 206, 506, 553
BccI	CCATC	6 cut(s)	26, 62, 83, 140, 472, 621
BciT130I	CCWGG	2 cut(s)	300, 546
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	6 cut(s)	192, 195, 198, 489, 520, 567
BlsI	GCNGC	6 cut(s)	193, 196, 199, 490, 521, 568
Bme1390I	CCNGG	2 cut(s)	300, 546
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	2 cut(s)	300, 546
BsaBI	GATNNNNATC	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	368
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 276
Bse118I	RCCGGY	1 cut(s)	557
Bse8I	GATNNNNATC	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	300, 546
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	2 cut(s)	73, 151
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	64, 276
BseMII	CTCAG	2 cut(s)	261, 287
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	5 cut(s)	178, 184, 206, 506, 553
BshNI	GGYRCC	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	558
BslI	CCNNNNNNNGG	2 cut(s)	64, 276
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	1 cut(s)	452
BspACI	CCGC	1 cut(s)	489
BspCNI	CTCAG	2 cut(s)	260, 286
BspLI	GGNNCC	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	368
BssMI	GATC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	368
Bst2UI	CCWGG	2 cut(s)	300, 546
Bst4CI	ACNGT	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	247, 273, 424
BstF5I	GGATG	2 cut(s)	73, 151
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	455
BstMBI	GATC	1 cut(s)	452
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 563, 598
BstNI	CCWGG	2 cut(s)	300, 546
BstSCI	CCNGG	2 cut(s)	298, 544
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	5 cut(s)	178, 184, 206, 506, 553
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	2 cut(s)	73, 151
BtsIMutI	CAGTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	557
Csp6I	GTAC	1 cut(s)	72
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	3 cut(s)	247, 273, 424
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
DraIII	CACNNNGTG	2 cut(s)	276, 340
Eco130I	CCWWGG	1 cut(s)	368
Eco47III	AGCGCT	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	298, 544
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
FaiI	YATR	5 cut(s)	95, 132, 216, 380, 621
Fnu4HI	GCNGC	6 cut(s)	192, 195, 198, 489, 520, 567
FokI	GGATG	2 cut(s)	80, 158
Fsp4HI	GCNGC	6 cut(s)	192, 195, 198, 489, 520, 567
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	6 cut(s)	192, 195, 198, 489, 520, 567
HaeII	RGCGCY	1 cut(s)	296
HapII	CCGG	1 cut(s)	558
HhaI	GCGC	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	416, 536
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	1 cut(s)	452
Hpy188I	TCNGA	1 cut(s)	250
Hpy188III	TCNNGA	3 cut(s)	7, 456, 470
HpyAV	CCTTC	2 cut(s)	144, 430
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	3 cut(s)	194, 228, 282
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 563, 598
HpyF3I	CTNAG	3 cut(s)	247, 273, 424
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	452
Lsp1109I	GCAGC	5 cut(s)	178, 184, 206, 506, 553
MaeIII	GTNAC	3 cut(s)	332, 440, 550
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	2 cut(s)	22, 545
MhlI	GDGCHC	1 cut(s)	594
MluCI	AATT	4 cut(s)	38, 239, 315, 390
MmeI	TCCRAC	2 cut(s)	151, 389
MnlI	CCTC	5 cut(s)	202, 431, 571, 604, 628
MseI	TTAA	5 cut(s)	32, 110, 242, 318, 500
MslI	CAYNNNNRTG	2 cut(s)	87, 327
MspA1I	CMGCKG	2 cut(s)	197, 519
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	2 cut(s)	300, 546
MvaI	CCWGG	2 cut(s)	300, 546
MwoI	GCNNNNNNNGC	3 cut(s)	197, 563, 598
NdeII	GATC	1 cut(s)	452
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	3 cut(s)	332, 440, 550
PfeI	GAWTC	2 cut(s)	416, 536
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	6 cut(s)	193, 196, 199, 490, 521, 568
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	298, 544
PspGI	CCWGG	2 cut(s)	298, 544
PspN4I	GGNNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	196
PvuII	CAGCTG	2 cut(s)	197, 519
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	2 cut(s)	87, 327
SaqAI	TTAA	5 cut(s)	32, 110, 242, 318, 500
SatI	GCNGC	6 cut(s)	192, 195, 198, 489, 520, 567
Sau3AI	GATC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	300, 546
SduI	GDGCHC	1 cut(s)	594
SetI	ASST	7 cut(s)	193, 199, 304, 442, 521, 550, 582
SfcI	CTRYAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	87, 327
Sse9I	AATT	4 cut(s)	38, 239, 315, 390
SsiI	CCGC	1 cut(s)	489
SspI	AATATT	2 cut(s)	477, 505
StyD4I	CCNGG	2 cut(s)	298, 544
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	38, 239, 315, 390
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	416, 536
Tru1I	TTAA	5 cut(s)	32, 110, 242, 318, 500
Tru9I	TTAA	5 cut(s)	32, 110, 242, 318, 500
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	3 cut(s)	332, 440, 550
TseI	GCWGC	5 cut(s)	191, 194, 197, 519, 566
Tsp45I	GTSAC	3 cut(s)	332, 440, 550
TspDTI	ATGAA	1 cut(s)	389
TspRI	CASTG	1 cut(s)	281
Van91I	CCANNNNNTGG	1 cut(s)	276
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.