Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

6150615 .. 6156683

Gene Structure 6069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1046000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTCAACTGCACGGCCTTTAAAGAAATTGGTGTCCTGCATTATCCTTGATTTGGATGGTACACTACTGAACACAGATGGTATTGTAAGTGAAGTTTTGAAAGTTTATTTGGGTAAGTATGGAAAGCAGTGGGATGGGCGGGAAGTTCAAAAAATAGCTGGAAAAACACCACTTGAAGCTGCAAGTGCTGTTGTGGAAGATTATGGGTTATCGTGTACAACGAATGAATTACTTTCAGAGATTACCCCATTGTTCTCCAATCAGTGGTGCAACATTAAAGCGCTTCCAGGTTCCTATCGGCTACTTAAACATTTGAGTGGTCATAGAGTGCCAATGGCATTGGCTTCAAACTCTCCAAAGGAAAACATTGAAACCAAACTTTCTTTTCATCAGGGCTGGAAGGAATCTTTTTCAGTCATCATTGGTGGTGATGAAGTAAGTTTGGGGAAGCCATCTCCTGAAATATTCCTTGAAGCTGCTAAAAGGCTCAATGTTGAACCTTCCAGCTGCCTTGTCATTGAAGATTCTCTACCAGGTGTTACAGCTGGAAAGGCTGCTGGAATGGAGGTGGTCGCTGTACCCTCCATCCCAAAGCAGTCACATCTCTATACATCAGCGGATGAGGTGATAAACTCTCTGCTTGATTTGCGACCTGAAATGTGGGGCCTACCTCCTTTCCAAGATTGGATAAAAGATACTTTACCTATAGAACCTTGGCATATTGGTGGTCCAGTTGTTAAGGGATTTGGTCGGGGCTCAAAAGTACTCGGGATCCCTACAGCAAATTTATCCACAGAAGGATATGCATCTCTTCTTTCCGAACATCCCTCGGGAGTATATTTTGGTTGGGCTGGATTATCAACACGGGGTGTCTTCAAAATGGTCATGAGTATTGGTTGGAATCCTTATTTCAACAACACCGAAAAGACCATAGAGCCATGGCTGCTTCATGACTTCGATGAGGATTTTTATGGGGAAGAACTGCGTCTTATCATAGTTGGCTACATACGGCCTGAGGCGAATTTCTCATCGCTTGAGAGCTTGATAGAAAAGATTCATGAGGACGGGCGAATTGCGGAGGAAGCTCTTGAACTTCCGTTGTACTCAAAGTACAAGGGCGACTCATATCTCAAAATTTCTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

382

Amino Acids

41.97

Weight (kDa)

5.26

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	12 - 187	1.1e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	14 - 193	4.1e-26	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	148 - 195	6.3e-07	HAD-hyrolase-like
Flavokinase	PF01687	237 - 362	4.5e-36	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	264
AciI	CCGC	3 cut(s)	139, 617, 1076
AclWI	GGATC	2 cut(s)	766, 779
AcsI	RAATTY	3 cut(s)	784, 1021, 1134
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	6 cut(s)	61, 217, 579, 765, 1103, 1112
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	52, 264
AjnI	CCWGG	2 cut(s)	286, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	7 cut(s)	158, 179, 476, 507, 545, 1041, 1085
AluI	AGCT	7 cut(s)	158, 179, 476, 507, 545, 1041, 1085
AlwI	GGATC	2 cut(s)	766, 779
Ama87I	CYCGRG	2 cut(s)	767, 829
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	3 cut(s)	14, 664, 1010
ApeKI	GCWGC	5 cut(s)	179, 476, 507, 554, 943
ApoI	RAATTY	3 cut(s)	784, 1021, 1134
Asp700I	GAANNNNTTC	1 cut(s)	1053
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	664, 728
AsuHPI	GGTGA	2 cut(s)	440, 637
AvaI	CYCGRG	2 cut(s)	767, 829
AvaII	GGWCC	1 cut(s)	728
AxyI	CCTNAGG	1 cut(s)	1014
BamHI	GGATCC	1 cut(s)	771
BanII	GRGCYC	1 cut(s)	758
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
BbsI	GAAGAC	1 cut(s)	865
BbvI	GCAGC	5 cut(s)	166, 463, 494, 541, 930
BccI	CCATC	5 cut(s)	50, 71, 128, 460, 593
BceAI	ACGGC	2 cut(s)	29, 1025
BciT130I	CCWGG	2 cut(s)	288, 534
BfmI	CTRYAG	2 cut(s)	705, 777
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
BlsI	GCNGC	5 cut(s)	181, 478, 509, 556, 945
BmcAI	AGTACT	1 cut(s)	765
Bme1390I	CCNGG	2 cut(s)	288, 534
Bme18I	GGWCC	1 cut(s)	728
BmeT110I	CYCGRG	2 cut(s)	767, 829
BmgT120I	GGNCC	2 cut(s)	664, 728
BmiI	GGNNCC	3 cut(s)	292, 665, 773
BmrFI	CCNGG	2 cut(s)	288, 534
BmsI	GCATC	1 cut(s)	815
BpiI	GAAGAC	1 cut(s)	865
BpuEI	CTTGAG	1 cut(s)	1055
BsaBI	GATNNNNATC	1 cut(s)	805
BsaJI	CCNNGG	3 cut(s)	713, 828, 938
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 264
Bse1I	ACTGG	1 cut(s)	731
Bse21I	CCTNAGG	1 cut(s)	1014
Bse8I	GATNNNNATC	1 cut(s)	805
BseBI	CCWGG	2 cut(s)	288, 534
BseDI	CCNNGG	3 cut(s)	713, 828, 938
BseGI	GGATG	5 cut(s)	61, 139, 585, 625, 823
BseJI	GATNNNNATC	1 cut(s)	805
BseLI	CCNNNNNNNGG	2 cut(s)	52, 264
BseMII	CTCAG	1 cut(s)	1005
BseNI	ACTGG	1 cut(s)	731
BseXI	GCAGC	5 cut(s)	166, 463, 494, 541, 930
BshFI	GGCC	3 cut(s)	16, 666, 1012
BsiHKCI	CYCGRG	2 cut(s)	767, 829
BslI	CCNNNNNNNGG	2 cut(s)	52, 264
BsnI	GGCC	3 cut(s)	16, 666, 1012
BsoBI	CYCGRG	2 cut(s)	767, 829
Bsp1286I	GDGCHC	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	771
Bsp19I	CCATGG	1 cut(s)	938
BspACI	CCGC	3 cut(s)	139, 617, 1076
BspANI	GGCC	3 cut(s)	16, 666, 1012
BspCNI	CTCAG	1 cut(s)	1006
BspHI	TCATGA	3 cut(s)	885, 949, 1057
BspLI	GGNNCC	3 cut(s)	292, 665, 773
BspPI	GGATC	2 cut(s)	766, 779
BsrGI	TGTACA	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	731
BssECI	CCNNGG	3 cut(s)	713, 828, 938
BssMI	GATC	1 cut(s)	771
BssT1I	CCWWGG	2 cut(s)	713, 938
Bst2UI	CCWGG	2 cut(s)	288, 534
Bst6I	CTCTTC	1 cut(s)	816
BstAUI	TGTACA	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	1014
BstDSI	CCRYGG	1 cut(s)	938
BstF5I	GGATG	5 cut(s)	61, 139, 585, 625, 823
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	1 cut(s)	774
BstMBI	GATC	1 cut(s)	771
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 551, 646, 943, 1082
BstNI	CCWGG	2 cut(s)	288, 534
BstSCI	CCNGG	2 cut(s)	286, 532
BstSFI	CTRYAG	2 cut(s)	705, 777
BstV1I	GCAGC	5 cut(s)	166, 463, 494, 541, 930
BstV2I	GAAGAC	1 cut(s)	865
BstX2I	RGATCY	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	771
Bsu36I	CCTNAGG	1 cut(s)	1014
BsuRI	GGCC	3 cut(s)	16, 666, 1012
BtgI	CCRYGG	1 cut(s)	938
BtgZI	GCGATG	1 cut(s)	1014
BtsCI	GGATG	5 cut(s)	61, 139, 585, 625, 823
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	134, 269
CciI	TCATGA	3 cut(s)	885, 949, 1057
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	664, 728
CseI	GACGC	1 cut(s)	974
CsiI	ACCWGGT	1 cut(s)	532
Csp6I	GTAC	6 cut(s)	60, 216, 578, 764, 1102, 1111
CviAII	CATG	4 cut(s)	886, 939, 950, 1058
CviQI	GTAC	6 cut(s)	60, 216, 578, 764, 1102, 1111
DdeI	CTNAG	1 cut(s)	1014
DpnI	GATC	1 cut(s)	773
DpnII	GATC	1 cut(s)	771
DraI	TTTAAA	1 cut(s)	21
DraIII	CACNNNGTG	1 cut(s)	869
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	713, 938
Eco24I	GRGCYC	1 cut(s)	758
Eco47I	GGWCC	1 cut(s)	728
Eco47III	AGCGCT	1 cut(s)	282
Eco81I	CCTNAGG	1 cut(s)	1014
Eco88I	CYCGRG	2 cut(s)	767, 829
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	286, 532
EcoT14I	CCWWGG	2 cut(s)	713, 938
EcoT22I	ATGCAT	1 cut(s)	808
EcoT38I	GRGCYC	1 cut(s)	758
ErhI	CCWWGG	2 cut(s)	713, 938
FaeI	CATG	4 cut(s)	889, 942, 953, 1061
FatI	CATG	4 cut(s)	885, 938, 949, 1057
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
FokI	GGATG	5 cut(s)	68, 146, 572, 632, 810
FriOI	GRGCYC	1 cut(s)	758
Fsp4HI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	16, 666, 1012
HgaI	GACGC	1 cut(s)	974
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	889, 942, 953, 1061
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	404, 524, 901, 1054, 1121
HphI	GGTGA	2 cut(s)	440, 637
Hpy166II	GTNNAC	3 cut(s)	6, 62, 216
Hpy188I	TCNGA	2 cut(s)	238, 820
Hpy188III	TCNNGA	7 cut(s)	458, 769, 831, 886, 950, 1058, 1088
Hpy8I	GTNNAC	3 cut(s)	6, 62, 216
HpyAV	CCTTC	3 cut(s)	394, 510, 791
HpyCH4V	TGCA	5 cut(s)	11, 39, 182, 270, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 551, 646, 943, 1082
HpyF3I	CTNAG	1 cut(s)	1014
Hsp92II	CATG	4 cut(s)	889, 942, 953, 1061
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	1 cut(s)	771
Lsp1109I	GCAGC	5 cut(s)	166, 463, 494, 541, 930
LweI	GCATC	1 cut(s)	815
MabI	ACCWGGT	1 cut(s)	532
MaeIII	GTNAC	2 cut(s)	538, 597
MalI	GATC	1 cut(s)	773
MboI	GATC	1 cut(s)	771
MboII	GAAGA	5 cut(s)	209, 533, 803, 865, 989
MflI	RGATCY	1 cut(s)	771
MhlI	GDGCHC	1 cut(s)	758
MluCI	AATT	6 cut(s)	26, 227, 784, 1021, 1071, 1134
MlyI	GAGTC	1 cut(s)	1115
MmeI	TCCRAC	1 cut(s)	878
MnlI	CCTC	9 cut(s)	559, 592, 616, 681, 838, 955, 1009, 1054, 1072
Mph1103I	ATGCAT	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	1053
MseI	TTAA	4 cut(s)	20, 276, 306, 738
MslI	CAYNNNNRTG	2 cut(s)	315, 723
MspA1I	CMGCKG	3 cut(s)	507, 545, 617
MspR9I	CCNGG	2 cut(s)	288, 534
MvaI	CCWGG	2 cut(s)	288, 534
MwoI	GCNNNNNNNGC	5 cut(s)	185, 551, 646, 943, 1082
NcoI	CCATGG	1 cut(s)	938
NdeII	GATC	1 cut(s)	771
NlaIII	CATG	4 cut(s)	889, 942, 953, 1061
NlaIV	GGNNCC	3 cut(s)	292, 665, 773
NmuCI	GTSAC	1 cut(s)	597
NsiI	ATGCAT	1 cut(s)	808
PagI	TCATGA	3 cut(s)	885, 949, 1057
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PdmI	GAANNNNTTC	1 cut(s)	1053
PfeI	GAWTC	4 cut(s)	404, 524, 901, 1054
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	5 cut(s)	181, 478, 509, 556, 945
PleI	GAGTC	1 cut(s)	1115
PpsI	GAGTC	1 cut(s)	1115
Psp6I	CCWGG	2 cut(s)	286, 532
PspGI	CCWGG	2 cut(s)	286, 532
PspN4I	GGNNCC	3 cut(s)	292, 665, 773
PspPI	GGNCC	2 cut(s)	664, 728
PsuI	RGATCY	1 cut(s)	771
PvuII	CAGCTG	2 cut(s)	507, 545
RsaI	GTAC	6 cut(s)	61, 217, 579, 765, 1103, 1112
RsaNI	GTAC	6 cut(s)	60, 216, 578, 764, 1102, 1111
RseI	CAYNNNNRTG	2 cut(s)	315, 723
SaqAI	TTAA	4 cut(s)	20, 276, 306, 738
SatI	GCNGC	5 cut(s)	180, 477, 508, 555, 944
Sau3AI	GATC	1 cut(s)	771
Sau96I	GGNCC	2 cut(s)	664, 728
ScaI	AGTACT	1 cut(s)	765
SchI	GAGTC	1 cut(s)	1115
ScrFI	CCNGG	2 cut(s)	288, 534
SduI	GDGCHC	1 cut(s)	758
SexAI	ACCWGGT	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	815
SfcI	CTRYAG	2 cut(s)	705, 777
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	2 cut(s)	315, 723
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
Sse9I	AATT	6 cut(s)	26, 227, 784, 1021, 1071, 1134
SsiI	CCGC	3 cut(s)	139, 617, 1076
SspI	AATATT	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	286, 532
StyI	CCWWGG	2 cut(s)	713, 938
TaqI	TCGA	1 cut(s)	957
TasI	AATT	6 cut(s)	26, 227, 784, 1021, 1071, 1134
TatI	WGTACW	4 cut(s)	215, 763, 1101, 1110
TfiI	GAWTC	4 cut(s)	404, 524, 901, 1054
Tru1I	TTAA	4 cut(s)	20, 276, 306, 738
Tru9I	TTAA	4 cut(s)	20, 276, 306, 738
TscAI	CASTG	2 cut(s)	134, 269
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	5 cut(s)	179, 476, 507, 554, 943
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	5 cut(s)	240, 377, 447, 938, 1046
TspGWI	ACGGA	1 cut(s)	1086
TspRI	CASTG	2 cut(s)	134, 269
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	3 cut(s)	784, 1021, 1134
XmnI	GAANNNNTTC	1 cut(s)	1053
ZrmI	AGTACT	1 cut(s)	765
Zsp2I	ATGCAT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.