Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Forward (+)

11431104 .. 11433322

Gene Structure 2219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTCGATGAGCAATTCCTTGAAAAAGCTCTCTTCTTGTGTTCTTATTGATCTCGATGGTACCTTAATCAACACAGATGGTGTTGTTGGTGACATTTTGAGGAAATACTTGTGTAAATATGGTAAACAGTGGGATGGAAGAGAATCATTGAAAATAGTTGGCAAAACTCCAGTAGAAGCTGCTACTACTATTGTTGAAGATTATGAACTTCCTTGTAAAGTTGATGAATTCAATTCTGAATTCTACCCTTTGTTCTCTGCTCAGATGGACAAAATCAAATCTCTTCCTGGTGCCAATAGGTTGATTCGACATTTGAAGTGTCATGGAGTACCTGTGGCTTTGGCTTCCAATTCTTCAAGAGCAAATATTGAATCCAAAATTTCATATCATGAAGGGTGGAAGGAATGCTTCTCGGTTATTGTTGGTAGTGATGAAGTCTCTAAAGGAAAGCCTTCTCCTGATATTTTTCTCGAAGCAGCGAAAAGATTGAAGAAAGATCCAGCTGACTGTTTGGTTATTGAAGATTCTGTGCCTGGTGTTATGGCTGGTAAAGCTGCTGGGACAAAAGTGATTGCTGTTCCTTCTCTGCCTAAGCAAACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGACTTGAAAAATGGGGACTTCCTCCATTCCAAGACTGGATAGAGAACACTTTACCAATTGATCCATGGCATATTGGAGGTCCAGTCATCAAAGGATTTGGCCGTGGCTCTAAAGTACTCGGAATCCCCACCGCTAACTTGTCAACAAAGGATTATGCGGATGAGCTAGTGGAACATCCTTCGGGAGTGTACTTTGGTTGGGCAGGCTTGGCAAAGAGAGGTGTCTTTAAAATGGTCATGAGCATTGGTTGGAATCCTTATTTCAATAACAAGGAGAAAACTATTGAACCATGGCTGCTTCACGATTTCACTGAGGATTTCTACGGAGAAGAGCTACGTCTTATTATCGTTGGCTATATACGCCCTGAGGCTAATTTCTCTTCACTGGAGAGTCTCATTGCAAAGATTCACGAGGACAGGGAAGTTGCAGAGAAAGCTCTTGATCTTCCTTCGTATGCTAAGTTTAAGGGTGATCCTTATCTGACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

379

Amino Acids

42.11

Weight (kDa)

5.97

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	13 - 187	5.1e-27	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	14 - 193	9.4e-27	Haloacid dehalogenase-like hydrolase
Flavokinase	PF01687	238 - 362	7.7e-37	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	2 cut(s)	59, 290
AciI	CCGC	2 cut(s)	780, 806
AclWI	GGATC	3 cut(s)	491, 704, 1115
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	3 cut(s)	227, 239, 378
AfaI	GTAC	4 cut(s)	61, 330, 765, 839
AjnI	CCWGG	2 cut(s)	286, 532
AluBI	AGCT	7 cut(s)	28, 179, 503, 554, 814, 982, 1085
AluI	AGCT	7 cut(s)	28, 179, 503, 554, 814, 982, 1085
Alw26I	GTCTC	2 cut(s)	442, 1046
AlwI	GGATC	3 cut(s)	491, 704, 1115
AoxI	GGCC	1 cut(s)	748
ApeKI	GCWGC	4 cut(s)	179, 476, 554, 943
ApoI	RAATTY	3 cut(s)	227, 239, 378
Asp700I	GAANNNNTTC	1 cut(s)	451
Asp718I	GGTACC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	728
AsuHPI	GGTGA	2 cut(s)	101, 1130
AvaII	GGWCC	1 cut(s)	728
AxyI	CCTNAGG	1 cut(s)	1014
BanI	GGYRCC	2 cut(s)	59, 290
BauI	CACGAG	1 cut(s)	1058
BbvI	GCAGC	4 cut(s)	166, 488, 541, 930
BccI	CCATC	4 cut(s)	50, 71, 128, 259
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	2 cut(s)	288, 534
BcoDI	GTCTC	2 cut(s)	442, 1046
BfaI	CTAG	1 cut(s)	815
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	4 cut(s)	180, 477, 555, 944
BlsI	GCNGC	4 cut(s)	181, 478, 556, 945
BmcAI	AGTACT	1 cut(s)	765
Bme1390I	CCNGG	2 cut(s)	288, 534
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	2 cut(s)	61, 292
BmrFI	CCNGG	2 cut(s)	288, 534
BpmI	CTGGAG	2 cut(s)	153, 1055
Bpu10I	CCTNAGC	1 cut(s)	591
BsaBI	GATNNNNATC	1 cut(s)	1125
BsaJI	CCNNGG	3 cut(s)	713, 751, 938
BsaXI	ACNNNNNCTCC	4 cut(s)	318, 348, 717, 747
Bse1I	ACTGG	4 cut(s)	170, 689, 731, 1038
Bse21I	CCTNAGG	1 cut(s)	1014
Bse3DI	GCAATG	1 cut(s)	1044
Bse8I	GATNNNNATC	1 cut(s)	1125
BseBI	CCWGG	2 cut(s)	288, 534
BseDI	CCNNGG	3 cut(s)	713, 751, 938
BseGI	GGATG	3 cut(s)	139, 814, 823
BseJI	GATNNNNATC	1 cut(s)	1125
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	3 cut(s)	275, 951, 1005
BseNI	ACTGG	4 cut(s)	170, 689, 731, 1038
BseXI	GCAGC	4 cut(s)	166, 488, 541, 930
BseYI	CCCAGC	1 cut(s)	557
BshFI	GGCC	1 cut(s)	750
BshNI	GGYRCC	2 cut(s)	59, 290
BslFI	GGGAC	2 cut(s)	574, 678
BsmAI	GTCTC	2 cut(s)	442, 1046
BsmFI	GGGAC	2 cut(s)	574, 678
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	750
Bsp143I	GATC	5 cut(s)	49, 496, 709, 1090, 1120
Bsp19I	CCATGG	2 cut(s)	713, 938
BspACI	CCGC	2 cut(s)	780, 806
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	3 cut(s)	274, 952, 1006
BspHI	TCATGA	2 cut(s)	388, 885
BspLI	GGNNCC	2 cut(s)	61, 292
BspMAI	CTGCAG	1 cut(s)	619
BspPI	GGATC	3 cut(s)	491, 704, 1115
BspQI	GCTCTTC	1 cut(s)	972
BspT107I	GGYRCC	2 cut(s)	59, 290
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	4 cut(s)	170, 689, 731, 1038
BssECI	CCNNGG	3 cut(s)	713, 751, 938
BssMI	GATC	5 cut(s)	49, 496, 709, 1090, 1120
BssSI	CACGAG	1 cut(s)	1058
BssT1I	CCWWGG	2 cut(s)	713, 938
Bst2BI	CACGAG	1 cut(s)	1058
Bst2UI	CCWGG	2 cut(s)	288, 534
Bst4CI	ACNGT	2 cut(s)	129, 509
Bst6I	CTCTTC	5 cut(s)	37, 133, 288, 972, 1033
BstC8I	GCNNGC	1 cut(s)	853
BstDEI	CTNAG	5 cut(s)	261, 591, 960, 1014, 1107
BstDSI	CCRYGG	3 cut(s)	713, 751, 938
BstF5I	GGATG	3 cut(s)	139, 814, 823
BstKTI	GATC	5 cut(s)	52, 499, 712, 1093, 1123
BstMAI	GTCTC	2 cut(s)	442, 1046
BstMBI	GATC	5 cut(s)	49, 496, 709, 1090, 1120
BstMWI	GCNNNNNNNGC	4 cut(s)	551, 857, 1008, 1082
BstNI	CCWGG	2 cut(s)	288, 534
BstSCI	CCNGG	2 cut(s)	286, 532
BstSFI	CTRYAG	1 cut(s)	615
BstV1I	GCAGC	4 cut(s)	166, 488, 541, 930
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
Bsu36I	CCTNAGG	1 cut(s)	1014
BsuRI	GGCC	1 cut(s)	750
BtgI	CCRYGG	3 cut(s)	713, 751, 938
BtsCI	GGATG	3 cut(s)	139, 814, 823
BtsIMutI	CAGTG	3 cut(s)	134, 957, 1031
Cac8I	GCNNGC	1 cut(s)	853
CciI	TCATGA	2 cut(s)	388, 885
Cfr13I	GGNCC	1 cut(s)	728
Csp6I	GTAC	4 cut(s)	60, 329, 764, 838
CviAII	CATG	5 cut(s)	323, 389, 714, 886, 939
CviQI	GTAC	4 cut(s)	60, 329, 764, 838
DdeI	CTNAG	5 cut(s)	261, 591, 960, 1014, 1107
DpnI	GATC	5 cut(s)	51, 498, 711, 1092, 1122
DpnII	GATC	5 cut(s)	49, 496, 709, 1090, 1120
DraI	TTTAAA	1 cut(s)	877
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	5 cut(s)	37, 133, 288, 972, 1033
EarI	CTCTTC	5 cut(s)	37, 133, 288, 972, 1033
Eco130I	CCWWGG	2 cut(s)	713, 938
Eco47I	GGWCC	1 cut(s)	728
Eco81I	CCTNAGG	1 cut(s)	1014
EcoRI	GAATTC	2 cut(s)	227, 239
EcoRII	CCWGG	2 cut(s)	286, 532
EcoT14I	CCWWGG	2 cut(s)	713, 938
ErhI	CCWWGG	2 cut(s)	713, 938
FaeI	CATG	5 cut(s)	326, 392, 717, 889, 942
FalI	AAGNNNNNCTT	2 cut(s)	392, 424
FaqI	GGGAC	2 cut(s)	574, 678
FatI	CATG	5 cut(s)	322, 388, 713, 885, 938
Fnu4HI	GCNGC	4 cut(s)	180, 477, 555, 944
FokI	GGATG	3 cut(s)	146, 810, 821
Fsp4HI	GCNGC	4 cut(s)	180, 477, 555, 944
FspBI	CTAG	1 cut(s)	815
GluI	GCNGC	4 cut(s)	180, 477, 555, 944
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	2 cut(s)	153, 1055
HaeIII	GGCC	1 cut(s)	750
Hin1II	CATG	5 cut(s)	326, 392, 717, 889, 942
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	8 cut(s)	143, 304, 371, 524, 771, 901, 1039, 1054
HphI	GGTGA	2 cut(s)	101, 1130
Hpy166II	GTNNAC	3 cut(s)	125, 792, 838
Hpy188I	TCNGA	4 cut(s)	238, 264, 770, 1131
Hpy8I	GTNNAC	3 cut(s)	125, 792, 838
HpyAV	CCTTC	6 cut(s)	386, 394, 462, 591, 837, 1107
HpyCH4III	ACNGT	2 cut(s)	129, 509
HpyCH4IV	ACGT	1 cut(s)	985
HpyCH4V	TGCA	3 cut(s)	617, 1049, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	551, 857, 1008, 1082
HpyF3I	CTNAG	5 cut(s)	261, 591, 960, 1014, 1107
HpySE526I	ACGT	1 cut(s)	985
Hsp92II	CATG	5 cut(s)	326, 392, 717, 889, 942
KpnI	GGTACC	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	49, 496, 709, 1090, 1120
LguI	GCTCTTC	1 cut(s)	972
Lsp1109I	GCAGC	4 cut(s)	166, 488, 541, 930
MaeI	CTAG	1 cut(s)	815
MaeII	ACGT	1 cut(s)	985
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	5 cut(s)	51, 498, 711, 1092, 1122
MboI	GATC	5 cut(s)	49, 496, 709, 1090, 1120
MfeI	CAATTG	1 cut(s)	705
MflI	RGATCY	1 cut(s)	496
MluCI	AATT	9 cut(s)	13, 227, 232, 239, 349, 378, 631, 705, 1021
MlyI	GAGTC	1 cut(s)	1048
MmeI	TCCRAC	1 cut(s)	878
MnlI	CCTC	7 cut(s)	93, 681, 719, 860, 955, 1009, 1054
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	3 cut(s)	65, 876, 1113
MspA1I	CMGCKG	1 cut(s)	503
MspR9I	CCNGG	2 cut(s)	288, 534
MunI	CAATTG	1 cut(s)	705
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	2 cut(s)	288, 534
MwoI	GCNNNNNNNGC	4 cut(s)	551, 857, 1008, 1082
NcoI	CCATGG	2 cut(s)	713, 938
NdeII	GATC	5 cut(s)	49, 496, 709, 1090, 1120
NlaIII	CATG	5 cut(s)	326, 392, 717, 889, 942
NlaIV	GGNNCC	2 cut(s)	61, 292
NmuCI	GTSAC	1 cut(s)	89
PagI	TCATGA	2 cut(s)	388, 885
PciSI	GCTCTTC	1 cut(s)	972
PctI	GAATGC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	7 cut(s)	143, 304, 371, 524, 771, 901, 1054
PkrI	GCNGC	4 cut(s)	181, 478, 556, 945
PleI	GAGTC	1 cut(s)	1047
PpsI	GAGTC	1 cut(s)	1047
Psp6I	CCWGG	2 cut(s)	286, 532
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	2 cut(s)	286, 532
PspN4I	GGNNCC	2 cut(s)	61, 292
PspPI	GGNCC	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	4 cut(s)	61, 330, 765, 839
RsaNI	GTAC	4 cut(s)	60, 329, 764, 838
SapI	GCTCTTC	1 cut(s)	972
SaqAI	TTAA	3 cut(s)	65, 876, 1113
SatI	GCNGC	4 cut(s)	180, 477, 555, 944
Sau3AI	GATC	5 cut(s)	49, 496, 709, 1090, 1120
Sau96I	GGNCC	1 cut(s)	728
ScaI	AGTACT	1 cut(s)	765
SchI	GAGTC	1 cut(s)	1048
ScrFI	CCNGG	2 cut(s)	288, 534
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	1 cut(s)	728
Sse9I	AATT	9 cut(s)	13, 227, 232, 239, 349, 378, 631, 705, 1021
SsiI	CCGC	2 cut(s)	780, 806
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	1 cut(s)	815
StyD4I	CCNGG	2 cut(s)	286, 532
StyI	CCWWGG	2 cut(s)	713, 938
TaaI	ACNGT	2 cut(s)	129, 509
TaiI	ACGT	1 cut(s)	988
TaqI	TCGA	5 cut(s)	5, 54, 307, 471, 642
TasI	AATT	9 cut(s)	13, 227, 232, 239, 349, 378, 631, 705, 1021
TatI	WGTACW	2 cut(s)	763, 837
TfiI	GAWTC	7 cut(s)	143, 304, 371, 524, 771, 901, 1054
Tru1I	TTAA	3 cut(s)	65, 876, 1113
Tru9I	TTAA	3 cut(s)	65, 876, 1113
TscAI	CASTG	3 cut(s)	134, 964, 1038
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	4 cut(s)	179, 476, 554, 943
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	6 cut(s)	219, 240, 372, 405, 447, 636
TspGWI	ACGGA	1 cut(s)	987
TspRI	CASTG	3 cut(s)	134, 964, 1038
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	3 cut(s)	227, 239, 378
XcmI	CCANNNNNNNNNTGG	2 cut(s)	681, 711
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	1 cut(s)	815
ZrmI	AGTACT	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.