Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

4122304 .. 4126865

Gene Structure 4562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG056800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTCTTGAAGATGTCCATCGCAGAGCCATTAAAGAAATTAGTTTCATGTGTTATCCTTGATTTGGATGGTACACTGCTATATACAGATGGCATAATAAGTGATGTTTTAAGAGTATATTTGGGGAAGTATGGAAAGAAATGGGATGGGAGGGAAGTTCAAAAGATAGTTGGAAAAACACCATTTGAAGCTGCAACTGCTATTGTGGAGGATTATGGGCTATCTTGCACAACGAGTGAATTAATCTCAGAGCTAAACCCAATGTTCTCCAATCAGTGGTGCAACATCAAAGCGCTTCCAGGTGCCAATCGGCTAATTAAACATTTGAGTGGTCACAGAGTGCCAATAGCATTGGCTTCAAACTCTCCAAGGGAAAACATAGAAACCAAAATTTCTTTTCATCAGGGTTGGAAAGAATCCTTCTTAGTCATCATTGGAGGTGACGAAGTAAGATCAGGAAAGCCATCTCCTGAAATATTCCTTGAAGCTGCTAAAAGATTAAATATTGAACCGTCCAGCTGCCTTGTCATTGAAGATTCTCTGCCAGGTGTGACAGCCGGTAAGGCTGCTGGAATGGAGGTAGTTGCTGTACCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACTTGATTTGCATCCTGAAAAGTGGGGCCTACCTCCTTTCAAAGATTGGATAAAAGACACTTTACCAATAGAACCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGCTAATCTATCCACTGAGCAATATTCAACTCTCCTTTCAGAACATCCCTCGGGAGTATATTTCGGTTGGGCTGGATTACGAACGCGAGGTGTCTTTAAAATGGTCATGAGTATTGGTTGGAATCCTTATTTCAACAACACTGAAAAGACTTTAGTGAGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

318

Amino Acids

34.9

Weight (kDa)

7.01

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	16 - 191	9.1e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	18 - 197	3.5e-24	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	153 - 199	6.9e-07	HAD-hyrolase-like
Flavokinase	PF01687	241 - 314	8.5e-18	Riboflavin kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccII	CGCG	1 cut(s)	877
AclWI	GGATC	2 cut(s)	778, 791
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	1 cut(s)	340
AfaI	GTAC	3 cut(s)	73, 591, 777
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	64, 276
AjnI	CCWGG	2 cut(s)	298, 544
AluBI	AGCT	5 cut(s)	191, 253, 488, 519, 794
AluI	AGCT	5 cut(s)	191, 253, 488, 519, 794
AlwI	GGATC	2 cut(s)	778, 791
Ama87I	CYCGRG	1 cut(s)	841
Aor51HI	AGCGCT	1 cut(s)	294
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	4 cut(s)	191, 488, 519, 566
ApoI	RAATTY	1 cut(s)	390
ArsI	GACNNNNNNTTYG	2 cut(s)	724, 756
AseI	ATTAAT	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	676, 740
AsuHPI	GGTGA	2 cut(s)	452, 649
AvaI	CYCGRG	1 cut(s)	841
AvaII	GGWCC	1 cut(s)	740
BamHI	GGATCC	1 cut(s)	783
BanI	GGYRCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	770
BbvI	GCAGC	4 cut(s)	178, 475, 506, 553
BccI	CCATC	6 cut(s)	26, 62, 83, 140, 472, 621
BciT130I	CCWGG	2 cut(s)	300, 546
BclI	TGATCA	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	789
BfoI	RGCGCY	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	192, 489, 520, 567
BlsI	GCNGC	4 cut(s)	193, 490, 521, 568
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	2 cut(s)	300, 546
Bme18I	GGWCC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	841
BmgT120I	GGNCC	2 cut(s)	676, 740
BmiI	GGNNCC	3 cut(s)	304, 677, 785
BmrFI	CCNGG	2 cut(s)	300, 546
BmsI	GCATC	1 cut(s)	670
BsaBI	GATNNNNATC	2 cut(s)	17, 660
BsaJI	CCNNGG	3 cut(s)	368, 725, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 276
Bse118I	RCCGGY	1 cut(s)	557
Bse8I	GATNNNNATC	2 cut(s)	17, 660
BseBI	CCWGG	2 cut(s)	300, 546
BseDI	CCNNGG	3 cut(s)	368, 725, 840
BseGI	GGATG	4 cut(s)	73, 151, 661, 835
BseJI	GATNNNNATC	2 cut(s)	17, 660
BseLI	CCNNNNNNNGG	2 cut(s)	64, 276
BseMII	CTCAG	2 cut(s)	261, 798
BseXI	GCAGC	4 cut(s)	178, 475, 506, 553
Bsh1236I	CGCG	1 cut(s)	877
BshFI	GGCC	1 cut(s)	678
BshNI	GGYRCC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	841
BsiSI	CCGG	1 cut(s)	558
BslI	CCNNNNNNNGG	2 cut(s)	64, 276
BsnI	GGCC	1 cut(s)	678
BsoBI	CYCGRG	1 cut(s)	841
Bsp1286I	GDGCHC	1 cut(s)	770
Bsp143I	GATC	3 cut(s)	452, 639, 783
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	2 cut(s)	260, 799
BspFNI	CGCG	1 cut(s)	877
BspHI	TCATGA	1 cut(s)	897
BspLI	GGNNCC	3 cut(s)	304, 677, 785
BspPI	GGATC	2 cut(s)	778, 791
BspT107I	GGYRCC	1 cut(s)	302
BsrFI	RCCGGY	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	3 cut(s)	368, 725, 840
BssMI	GATC	3 cut(s)	452, 639, 783
BssT1I	CCWWGG	2 cut(s)	368, 725
Bst2UI	CCWGG	2 cut(s)	300, 546
Bst4CI	ACNGT	1 cut(s)	513
BstDEI	CTNAG	3 cut(s)	247, 424, 807
BstF5I	GGATG	4 cut(s)	73, 151, 661, 835
BstFNI	CGCG	1 cut(s)	877
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	3 cut(s)	455, 642, 786
BstMBI	GATC	3 cut(s)	452, 639, 783
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 563
BstNI	CCWGG	2 cut(s)	300, 546
BstSCI	CCNGG	2 cut(s)	298, 544
BstSFI	CTRYAG	1 cut(s)	789
BstUI	CGCG	1 cut(s)	877
BstV1I	GCAGC	4 cut(s)	178, 475, 506, 553
BstX2I	RGATCY	1 cut(s)	783
BstYI	RGATCY	1 cut(s)	783
BsuRI	GGCC	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	4 cut(s)	73, 151, 661, 835
BtsI	GCAGTG	1 cut(s)	74
BtsIMutI	CAGTG	4 cut(s)	74, 281, 804, 930
CciI	TCATGA	1 cut(s)	897
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	676, 740
Csp6I	GTAC	3 cut(s)	72, 590, 776
CviAII	CATG	2 cut(s)	48, 898
CviQI	GTAC	3 cut(s)	72, 590, 776
DdeI	CTNAG	3 cut(s)	247, 424, 807
DpnI	GATC	3 cut(s)	454, 641, 785
DpnII	GATC	3 cut(s)	452, 639, 783
DraI	TTTAAA	1 cut(s)	889
DraIII	CACNNNGTG	1 cut(s)	340
Eco130I	CCWWGG	2 cut(s)	368, 725
Eco24I	GRGCYC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	740
Eco47III	AGCGCT	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	841
EcoO109I	RGGNCCY	1 cut(s)	676
EcoRII	CCWGG	2 cut(s)	298, 544
EcoT14I	CCWWGG	2 cut(s)	368, 725
EcoT38I	GRGCYC	1 cut(s)	770
ErhI	CCWWGG	2 cut(s)	368, 725
FaeI	CATG	2 cut(s)	51, 901
FatI	CATG	2 cut(s)	47, 897
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	192, 489, 520, 567
FokI	GGATG	4 cut(s)	80, 158, 648, 822
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	4 cut(s)	192, 489, 520, 567
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	4 cut(s)	192, 489, 520, 567
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	558
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	51, 901
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	416, 536, 913, 949
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	2 cut(s)	452, 649
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	250, 832
Hpy188III	TCNNGA	6 cut(s)	7, 456, 470, 665, 843, 898
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	4 cut(s)	194, 228, 282, 661
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 563
HpyF3I	CTNAG	3 cut(s)	247, 424, 807
Hsp92II	CATG	2 cut(s)	51, 901
HspAI	GCGC	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	452, 639, 783
Lsp1109I	GCAGC	4 cut(s)	178, 475, 506, 553
LweI	GCATC	1 cut(s)	670
MaeIII	GTNAC	3 cut(s)	332, 440, 550
MalI	GATC	3 cut(s)	454, 641, 785
MboI	GATC	3 cut(s)	452, 639, 783
MboII	GAAGA	2 cut(s)	22, 545
MflI	RGATCY	1 cut(s)	783
MhlI	GDGCHC	1 cut(s)	770
MluCI	AATT	5 cut(s)	38, 239, 315, 390, 732
MmeI	TCCRAC	3 cut(s)	151, 389, 890
MnlI	CCTC	9 cut(s)	144, 202, 431, 571, 604, 628, 693, 850, 872
MseI	TTAA	7 cut(s)	32, 110, 242, 318, 500, 750, 888
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	519
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	2 cut(s)	300, 546
MvaI	CCWGG	2 cut(s)	300, 546
MvnI	CGCG	1 cut(s)	877
MwoI	GCNNNNNNNGC	2 cut(s)	197, 563
NdeII	GATC	3 cut(s)	452, 639, 783
NlaIII	CATG	2 cut(s)	51, 901
NlaIV	GGNNCC	3 cut(s)	304, 677, 785
NmuCI	GTSAC	3 cut(s)	332, 440, 550
PagI	TCATGA	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	416, 536, 913
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	193, 490, 521, 568
PshBI	ATTAAT	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	298, 544
PspGI	CCWGG	2 cut(s)	298, 544
PspN4I	GGNNCC	3 cut(s)	304, 677, 785
PspPI	GGNCC	2 cut(s)	676, 740
PsuI	RGATCY	1 cut(s)	783
PvuII	CAGCTG	1 cut(s)	519
RsaI	GTAC	3 cut(s)	73, 591, 777
RsaNI	GTAC	3 cut(s)	72, 590, 776
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	7 cut(s)	32, 110, 242, 318, 500, 750, 888
SatI	GCNGC	4 cut(s)	192, 489, 520, 567
Sau3AI	GATC	3 cut(s)	452, 639, 783
Sau96I	GGNCC	2 cut(s)	676, 740
ScaI	AGTACT	1 cut(s)	777
ScrFI	CCNGG	2 cut(s)	300, 546
SduI	GDGCHC	1 cut(s)	770
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	789
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	5 cut(s)	38, 239, 315, 390, 732
SspI	AATATT	3 cut(s)	477, 505, 815
StyD4I	CCNGG	2 cut(s)	298, 544
StyI	CCWWGG	2 cut(s)	368, 725
TaaI	ACNGT	1 cut(s)	513
TasI	AATT	5 cut(s)	38, 239, 315, 390, 732
TatI	WGTACW	1 cut(s)	775
TfiI	GAWTC	3 cut(s)	416, 536, 913
Tru1I	TTAA	7 cut(s)	32, 110, 242, 318, 500, 750, 888
Tru9I	TTAA	7 cut(s)	32, 110, 242, 318, 500, 750, 888
TscAI	CASTG	4 cut(s)	81, 281, 811, 937
TseFI	GTSAC	3 cut(s)	332, 440, 550
TseI	GCWGC	4 cut(s)	191, 488, 519, 566
Tsp45I	GTSAC	3 cut(s)	332, 440, 550
TspDTI	ATGAA	2 cut(s)	36, 389
TspRI	CASTG	4 cut(s)	81, 281, 811, 937
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.