Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

3861130 .. 3868624

Gene Structure 7495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG048600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAATCATCCAAAACTTTTTATTGGGCAACAGCTCCCGTCCACTTCTTTGGTTTCCCAGTCTCAAAGTTCTCTTCCTCCAATATCTAATTCATTTTCTTCTCTCTCAGTCTACTACTTCACCTTCATCATCGTGAATCCAAAGCTTCGCTTTGCTTTCTGTCAAGCCCACACTTCTCTCTCCCTCCAAAGCCCAGATCACTTCCAAGCAGGTCATATTAGATTTCTATTGAGAAGAGTTTGGGCTGAGTATAGTCGAGAGCAGGATTTCTTTGTCGTTTTCTTTTGTAAAAACAAAACCATATTGATTTGGATTATATGTTCCATTGATCAGAGCATAGTGAATCTCAGTGATCTGTATATGGCCTTGAAGATGTCCATCACAGAGCCATTAAAGAAATTAGTGTCGTGTGTTATCCTTGATTTGGATGGTACACTACTGCACACAGATGGCATAGTAAGTGATGTTTTAAGAGTTTATTTGGGCAAGTATGGAAAGAAATGGGATGGGAGGGAAGTTGAAAAGATAGTTGGAAAAACACCACTCGAAGCTGCAACTGCTGTTGCGGAGGAATATGGGCTATCTTGCACAACGAGTGAATTACTCTCAGAGCTTGACCCAATGTTCTCAAATCAGTGGTGCAACATCAAAGCGCTTCCGGGTGCCAATCGGCTAATTAAGCATCTGAGTGGTCACAGAGTGCCAATGGCATTGGCTTCAAACTCTCCCAGAGAAAACATAGAAACCAAAATTTCTTTTCATCCGGGCTGGAAAGAAACCTTCTTAGTCATCATTGGAGGTGACGAAGTAAGATCAGGGAAGCCATCTCCTGAAATATTCCTTGAAGCTGCTAAAAGACTAAATATTGAACCTTCCAGCTGCCTTGTCATTGAAGATTCTTTGCCAGGTGTGACAGCCGGTAAGGCTGCTGGAATGGAGGTAGTTGTTGTACCCTCTCTGCCAAAGCAATCCCATCTCTATACTTCAGCAGATGAGGTGATCAACTCTCTACTTGATTTGCATCCTGAAAAGTGGGGCCTACCTCCTTTCAAAGATTGGATAAAAGACACTTTACCAATAGAACCTTGGCAAATTGGTGGTCCTGTCATTAAGGGATTTGGTCGGGGCTCAAAAGTACTTGGGATCCCTACAGGTTTGTGGACTAAGGCTGTTTGCTATTGGCTTATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

397

Amino Acids

44.2

Weight (kDa)

7.6

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	136 - 311	3.6e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	138 - 317	4.5e-24	Haloacid dehalogenase-like hydrolase
Hydrolase_like	PF13242	273 - 319	1.3e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	566
AclWI	GGATC	2 cut(s)	1138, 1151
AcsI	RAATTY	1 cut(s)	750
AcuI	CTGAAG	1 cut(s)	969
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	3 cut(s)	433, 951, 1137
AfeI	AGCGCT	1 cut(s)	654
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	7 cut(s)	370, 521, 720, 845, 869, 893, 1051
AjnI	CCWGG	1 cut(s)	904
AjuI	GAANNNNNNNTTGG	4 cut(s)	73, 105, 513, 545
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	6 cut(s)	34, 145, 551, 613, 848, 879
AluI	AGCT	6 cut(s)	34, 145, 551, 613, 848, 879
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	1138, 1151
Aor51HI	AGCGCT	1 cut(s)	654
AoxI	GGCC	2 cut(s)	363, 1036
ApeKI	GCWGC	4 cut(s)	551, 848, 879, 926
ApoI	RAATTY	1 cut(s)	750
ArsI	GACNNNNNNTTYG	2 cut(s)	1084, 1116
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	2 cut(s)	1036, 1100
AsuC2I	CCSGG	2 cut(s)	660, 765
AsuHPI	GGTGA	3 cut(s)	112, 812, 1009
AvaII	GGWCC	1 cut(s)	1100
BamHI	GGATCC	1 cut(s)	1143
BanI	GGYRCC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	1130
BbvI	GCAGC	4 cut(s)	538, 835, 866, 913
BccI	CCATC	6 cut(s)	386, 422, 443, 500, 832, 981
BciT130I	CCWGG	1 cut(s)	906
BclI	TGATCA	2 cut(s)	328, 999
BcnI	CCSGG	2 cut(s)	660, 765
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	1149
BfoI	RGCGCY	1 cut(s)	656
BfuAI	ACCTGC	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	923
BisI	GCNGC	4 cut(s)	552, 849, 880, 927
BlsI	GCNGC	4 cut(s)	553, 850, 881, 928
BmcAI	AGTACT	1 cut(s)	1137
Bme1390I	CCNGG	3 cut(s)	660, 765, 906
Bme18I	GGWCC	1 cut(s)	1100
BmgT120I	GGNCC	2 cut(s)	1036, 1100
BmiI	GGNNCC	3 cut(s)	664, 1037, 1145
BmrFI	CCNGG	3 cut(s)	660, 765, 906
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	2 cut(s)	691, 1030
BmuI	ACTGGG	1 cut(s)	52
BpuMI	CCSGG	2 cut(s)	660, 765
BsaBI	GATNNNNATC	2 cut(s)	377, 1020
BsaJI	CCNNGG	1 cut(s)	1085
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	1 cut(s)	58
Bse8I	GATNNNNATC	2 cut(s)	377, 1020
BseBI	CCWGG	1 cut(s)	906
BseDI	CCNNGG	1 cut(s)	1085
BseGI	GGATG	5 cut(s)	7, 433, 511, 760, 1021
BseJI	GATNNNNATC	2 cut(s)	377, 1020
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	5 cut(s)	120, 237, 361, 621, 677
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	4 cut(s)	538, 835, 866, 913
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	2 cut(s)	365, 1038
BshNI	GGYRCC	1 cut(s)	662
BsiSI	CCGG	3 cut(s)	659, 764, 918
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	2 cut(s)	365, 1038
Bsp1286I	GDGCHC	1 cut(s)	1130
Bsp143I	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	2 cut(s)	365, 1038
BspCNI	CTCAG	5 cut(s)	119, 238, 360, 620, 678
BspLI	GGNNCC	3 cut(s)	664, 1037, 1145
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	2 cut(s)	1138, 1151
BspT107I	GGYRCC	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	1 cut(s)	1085
BssMI	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
BssT1I	CCWWGG	1 cut(s)	1085
Bst2UI	CCWGG	1 cut(s)	906
Bst6I	CTCTTC	2 cut(s)	78, 229
BstDEI	CTNAG	7 cut(s)	106, 246, 347, 607, 686, 784, 1164
BstF5I	GGATG	5 cut(s)	7, 433, 511, 760, 1021
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	6 cut(s)	199, 331, 355, 815, 1002, 1146
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 679, 923
BstNI	CCWGG	1 cut(s)	906
BstSCI	CCNGG	3 cut(s)	658, 763, 904
BstSFI	CTRYAG	1 cut(s)	1149
BstV1I	GCAGC	4 cut(s)	538, 835, 866, 913
BstX2I	RGATCY	1 cut(s)	1143
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	1143
BsuRI	GGCC	2 cut(s)	365, 1038
BtsCI	GGATG	5 cut(s)	7, 433, 511, 760, 1021
BtsIMutI	CAGTG	2 cut(s)	355, 641
BveI	ACCTGC	1 cut(s)	200
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	2 cut(s)	1036, 1100
Csp6I	GTAC	3 cut(s)	432, 950, 1136
CviQI	GTAC	3 cut(s)	432, 950, 1136
DdeI	CTNAG	7 cut(s)	106, 246, 347, 607, 686, 784, 1164
DpnI	GATC	6 cut(s)	198, 330, 354, 814, 1001, 1145
DpnII	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
DraIII	CACNNNGTG	1 cut(s)	700
Eam1104I	CTCTTC	2 cut(s)	78, 229
EarI	CTCTTC	2 cut(s)	78, 229
Eco130I	CCWWGG	1 cut(s)	1085
Eco24I	GRGCYC	1 cut(s)	1130
Eco47I	GGWCC	1 cut(s)	1100
Eco47III	AGCGCT	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	969
EcoO109I	RGGNCCY	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	904
EcoT14I	CCWWGG	1 cut(s)	1085
EcoT38I	GRGCYC	1 cut(s)	1130
ErhI	CCWWGG	1 cut(s)	1085
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FbaI	TGATCA	2 cut(s)	328, 999
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	4 cut(s)	552, 849, 880, 927
FokI	GGATG	4 cut(s)	440, 518, 747, 1008
FriOI	GRGCYC	1 cut(s)	1130
Fsp4HI	GCNGC	4 cut(s)	552, 849, 880, 927
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	4 cut(s)	552, 849, 880, 927
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	365, 1038
HapII	CCGG	3 cut(s)	659, 764, 918
HhaI	GCGC	1 cut(s)	655
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	4 cut(s)	4, 136, 343, 896
HpaII	CCGG	3 cut(s)	659, 764, 918
HphI	GGTGA	3 cut(s)	112, 812, 1009
Hpy166II	GTNNAC	4 cut(s)	42, 112, 434, 1161
Hpy188I	TCNGA	3 cut(s)	333, 610, 687
Hpy188III	TCNNGA	4 cut(s)	133, 257, 830, 1025
Hpy8I	GTNNAC	4 cut(s)	42, 112, 434, 1161
HpyAV	CCTTC	3 cut(s)	133, 790, 882
HpyCH4V	TGCA	5 cut(s)	442, 554, 588, 642, 1021
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 679, 923
HpyF3I	CTNAG	7 cut(s)	106, 246, 347, 607, 686, 784, 1164
HspAI	GCGC	1 cut(s)	653
Ksp22I	TGATCA	2 cut(s)	328, 999
Kzo9I	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
LmnI	GCTCC	1 cut(s)	39
Lsp1109I	GCAGC	4 cut(s)	538, 835, 866, 913
LweI	GCATC	2 cut(s)	691, 1030
MaeIII	GTNAC	3 cut(s)	692, 800, 910
MalI	GATC	6 cut(s)	198, 330, 354, 814, 1001, 1145
MboI	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
MboII	GAAGA	5 cut(s)	65, 90, 246, 382, 905
MflI	RGATCY	1 cut(s)	1143
MhlI	GDGCHC	1 cut(s)	1130
MluCI	AATT	6 cut(s)	88, 398, 599, 675, 750, 1092
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	9 cut(s)	87, 194, 504, 562, 791, 931, 964, 988, 1053
MseI	TTAA	4 cut(s)	392, 470, 678, 1110
MslI	CAYNNNNRTG	3 cut(s)	131, 447, 687
MspA1I	CMGCKG	1 cut(s)	879
MspI	CCGG	3 cut(s)	659, 764, 918
MspR9I	CCNGG	3 cut(s)	660, 765, 906
MvaI	CCWGG	1 cut(s)	906
MwoI	GCNNNNNNNGC	3 cut(s)	557, 679, 923
NciI	CCSGG	2 cut(s)	660, 765
NdeII	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
NlaIV	GGNNCC	3 cut(s)	664, 1037, 1145
NmuCI	GTSAC	3 cut(s)	692, 800, 910
PfeI	GAWTC	4 cut(s)	4, 136, 343, 896
PkrI	GCNGC	4 cut(s)	553, 850, 881, 928
Psp6I	CCWGG	1 cut(s)	904
PspGI	CCWGG	1 cut(s)	904
PspN4I	GGNNCC	3 cut(s)	664, 1037, 1145
PspPI	GGNCC	2 cut(s)	1036, 1100
PsuI	RGATCY	1 cut(s)	1143
PvuII	CAGCTG	1 cut(s)	879
RsaI	GTAC	3 cut(s)	433, 951, 1137
RsaNI	GTAC	3 cut(s)	432, 950, 1136
RseI	CAYNNNNRTG	3 cut(s)	131, 447, 687
SaqAI	TTAA	4 cut(s)	392, 470, 678, 1110
SatI	GCNGC	4 cut(s)	552, 849, 880, 927
Sau3AI	GATC	6 cut(s)	196, 328, 352, 812, 999, 1143
Sau96I	GGNCC	2 cut(s)	1036, 1100
ScaI	AGTACT	1 cut(s)	1137
ScrFI	CCNGG	3 cut(s)	660, 765, 906
SduI	GDGCHC	1 cut(s)	1130
SfaNI	GCATC	2 cut(s)	691, 1030
SfcI	CTRYAG	1 cut(s)	1149
SinI	GGWCC	1 cut(s)	1100
SmiMI	CAYNNNNRTG	3 cut(s)	131, 447, 687
Sse9I	AATT	6 cut(s)	88, 398, 599, 675, 750, 1092
SsiI	CCGC	1 cut(s)	566
SspI	AATATT	2 cut(s)	837, 865
StyD4I	CCNGG	3 cut(s)	658, 763, 904
StyI	CCWWGG	1 cut(s)	1085
TaqI	TCGA	2 cut(s)	256, 546
TasI	AATT	6 cut(s)	88, 398, 599, 675, 750, 1092
TatI	WGTACW	1 cut(s)	1135
TfiI	GAWTC	4 cut(s)	4, 136, 343, 896
Tru1I	TTAA	4 cut(s)	392, 470, 678, 1110
Tru9I	TTAA	4 cut(s)	392, 470, 678, 1110
TscAI	CASTG	2 cut(s)	355, 641
TseFI	GTSAC	3 cut(s)	692, 800, 910
TseI	GCWGC	4 cut(s)	551, 848, 879, 926
Tsp45I	GTSAC	3 cut(s)	692, 800, 910
TspDTI	ATGAA	4 cut(s)	17, 81, 115, 749
TspRI	CASTG	2 cut(s)	355, 641
VpaK11BI	GGWCC	1 cut(s)	1100
XapI	RAATTY	1 cut(s)	750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1083
XmiI	GTMKAC	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.