Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001978

Physical Location & Seq

Genomic Coordinates Reverse (-)

3572193 .. 3575108

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03220.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTCAACTGCACGGCCTTTAAAGAAATTGGTGTCCTGCATTATCCTTGATTTGGATGGTACACTACTGAACACAGATGGTATTGTAAGTGAAGTTTTGAAAGTTTATTTGGGTAAGTATGGAAAGCAGTGGGATGGGCGGGAAGTTCAAAAAATAGCTGGAAAAACACCATTTGAAGCTGCAAGTGCTGTTGTGGAAGATTATGGGTGGTGCAACATTAAAGCGCTTCCAGGTTCCAATCGGCTAATTAAACATTTGAGTGGTCATAGAGTGCCAATGGCATTGGCTTCAAACTCTCCAAAGGAAAACATTGAAACCAAACTTTCTGTTCATCAGGGCTGGAAGGAATCTTTTTCAGTTGTCATTGGTGGTGATGAAGTAAGTTCGGGGAAGCCATCTCCTGAAATATTCCTTGAAGCTGCTAAAAGGCTCAATGTTGAACCTTCCAGCTGCCTTGTCATTGAAGATTCTCTACCGGGTGTTACAGCTGGAAAGGCTGCTGGAATGGAGGTGGTCGCTGTACCCTCCATCCCAAAGCAGTCCAATCTCTATACATCAGCGGATGAGGTGATAAACTCTCTACTTGATTTGCGACCTGAATTGTGGGGCCTACCTCCTTTCCAAGACTGGATAAAAGATACTTTACCAATAGAACCTTGGCATATTGGTGGTCCGGTTGTAAAGGGATTTGGTCGGGGCTCAAAAGTACTCGGGATCCCTACAGCAAATTTATCCACAGAAGGATATGCATCTCTTCTTTCCGAACATCCCTCGGGAGTATATTTTGGTTGGGCTGGATTATCAACACGGGGTGTCTTCAAAATGGTCATGAGTATTGGTTCGAATCCTTATTTCAACAACACCGAAAAGACTATAGAGCCATGGCTGCTTCATGACTTCGATGAGGATTTTTATGGGGAAGAACTGCGTCTTGTTATAGTTGGCTACATACGGCCTGAGGAAGCTCTTGAACTTCCATTGTACTCAAAGTACAAGGACGACTCGTATCTCAAAATTTCTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0003919 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0006915 GO:0006950 GO:0008150 GO:0008152 GO:0008219 GO:0008531 GO:0009611 GO:0009893 GO:0009987 GO:0012501 GO:0016301 GO:0016310 GO:0016311 GO:0016740 GO:0016772 GO:0016773 GO:0016779 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0033860 GO:0033864 GO:0042060 GO:0042578 GO:0043085 GO:0043167 GO:0043169 GO:0044093 GO:0044237 GO:0044424 GO:0044464 GO:0046872 GO:0048518 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0065007 GO:0065009 GO:0070566 GO:0072593

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Flavokinase HAD_2

Protein Analysis

342

Amino Acids

37.37

Weight (kDa)

5.4

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21470
fragaria_vesca	FvH4_3g04040 FvH4_3g04040 FvH4_3g04040
malus_domestica	MD10G1046000.v1.1
prunus_persica	Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.6G138200_v2.0.a1 Prupe.8G053000_v2.0.a1
pyrus_communis	pycom10g03220
rosa_chinensis	RchiOBHm_Chr5g0006401 RchiOBHm_Chr5g0006411 RchiOBHm_Chr5g0006461 RchiOBHm_Chr5g0006481 RchiOBHm_Chr5g0006511
rosa_laevigata	RLG00000031355 RLG00000031356 RLG00000031361 RLG00000031394 RLG00000031395
rosa_multiflora	Rmu_sc0003884.1_g000006 Rmu_sc0008991.1_g000002 Rmu_sc0008991.1_g000014
rosa_roxburghii	Rroxscaffold_1G00031820 Rroxscaffold_1G00069540
rosa_rugosa	Rorug04G0421200 Rorug04G0421600
rosa_samantha	Rh5AG049300 Rh5BG048600 Rh5BG060500 Rh5CG056800 Rh5CG056900 Rh5DG047900
rosa_wichuraiana	Rw5G004910 Rw5G004930 Rw5G004940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	139, 560
AclWI	GGATC	2 cut(s)	709, 722
AcsI	RAATTY	2 cut(s)	727, 1014
AdeI	CACNNNGTG	1 cut(s)	812
AfaI	GTAC	5 cut(s)	61, 522, 708, 983, 992
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	6 cut(s)	158, 179, 419, 450, 488, 965
AluI	AGCT	6 cut(s)	158, 179, 419, 450, 488, 965
AlwI	GGATC	2 cut(s)	709, 722
Ama87I	CYCGRG	2 cut(s)	710, 772
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	3 cut(s)	14, 607, 953
ApeKI	GCWGC	5 cut(s)	179, 419, 450, 497, 886
ApoI	RAATTY	2 cut(s)	727, 1014
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	607, 671
AsuC2I	CCSGG	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	383, 580
AsuII	TTCGAA	1 cut(s)	842
AvaI	CYCGRG	2 cut(s)	710, 772
AvaII	GGWCC	1 cut(s)	671
AxyI	CCTNAGG	1 cut(s)	957
BamHI	GGATCC	1 cut(s)	714
BanII	GRGCYC	1 cut(s)	701
BarI	GAAGNNNNNNTAC	2 cut(s)	456, 488
BbsI	GAAGAC	1 cut(s)	808
BbvI	GCAGC	5 cut(s)	166, 406, 437, 484, 873
BccI	CCATC	5 cut(s)	50, 71, 128, 403, 536
BceAI	ACGGC	2 cut(s)	29, 968
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	477
BfmI	CTRYAG	2 cut(s)	720, 873
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	5 cut(s)	180, 420, 451, 498, 887
BlsI	GCNGC	5 cut(s)	181, 421, 452, 499, 888
BmcAI	AGTACT	1 cut(s)	708
Bme1390I	CCNGG	2 cut(s)	231, 477
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	2 cut(s)	710, 772
BmgT120I	GGNCC	2 cut(s)	607, 671
BmiI	GGNNCC	3 cut(s)	235, 608, 716
BmrFI	CCNGG	2 cut(s)	231, 477
BmsI	GCATC	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	808
Bpu14I	TTCGAA	1 cut(s)	842
BpuMI	CCSGG	1 cut(s)	477
BsaBI	GATNNNNATC	1 cut(s)	748
BsaJI	CCNNGG	3 cut(s)	656, 771, 881
BsaWI	WCCGGW	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	632
Bse21I	CCTNAGG	1 cut(s)	957
Bse8I	GATNNNNATC	1 cut(s)	748
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	656, 771, 881
BseGI	GGATG	5 cut(s)	61, 139, 528, 568, 766
BseJI	GATNNNNATC	1 cut(s)	748
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	948
BseNI	ACTGG	1 cut(s)	632
BseXI	GCAGC	5 cut(s)	166, 406, 437, 484, 873
BshFI	GGCC	3 cut(s)	16, 609, 955
BsiHKCI	CYCGRG	2 cut(s)	710, 772
BsiSI	CCGG	2 cut(s)	476, 674
BslI	CCNNNNNNNGG	1 cut(s)	52
BsnI	GGCC	3 cut(s)	16, 609, 955
BsoBI	CYCGRG	2 cut(s)	710, 772
Bsp119I	TTCGAA	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	701
Bsp143I	GATC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	881
BspACI	CCGC	2 cut(s)	139, 560
BspANI	GGCC	3 cut(s)	16, 609, 955
BspCNI	CTCAG	1 cut(s)	949
BspHI	TCATGA	2 cut(s)	828, 892
BspLI	GGNNCC	3 cut(s)	235, 608, 716
BspPI	GGATC	2 cut(s)	709, 722
BspT104I	TTCGAA	1 cut(s)	842
BsrI	ACTGG	1 cut(s)	632
BssECI	CCNNGG	3 cut(s)	656, 771, 881
BssMI	GATC	1 cut(s)	714
BssT1I	CCWWGG	2 cut(s)	656, 881
Bst2UI	CCWGG	1 cut(s)	231
Bst6I	CTCTTC	1 cut(s)	759
BstBI	TTCGAA	1 cut(s)	842
BstDEI	CTNAG	1 cut(s)	957
BstDSI	CCRYGG	1 cut(s)	881
BstF5I	GGATG	5 cut(s)	61, 139, 528, 568, 766
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	1 cut(s)	717
BstMBI	GATC	1 cut(s)	714
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 494, 886
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	229, 475
BstSFI	CTRYAG	2 cut(s)	720, 873
BstV1I	GCAGC	5 cut(s)	166, 406, 437, 484, 873
BstV2I	GAAGAC	1 cut(s)	808
BstX2I	RGATCY	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	714
Bsu36I	CCTNAGG	1 cut(s)	957
BsuRI	GGCC	3 cut(s)	16, 609, 955
BtgI	CCRYGG	1 cut(s)	881
BtsCI	GGATG	5 cut(s)	61, 139, 528, 568, 766
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	134
CciI	TCATGA	2 cut(s)	828, 892
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	607, 671
CseI	GACGC	1 cut(s)	917
Csp6I	GTAC	5 cut(s)	60, 521, 707, 982, 991
CviAII	CATG	3 cut(s)	829, 882, 893
CviQI	GTAC	5 cut(s)	60, 521, 707, 982, 991
DdeI	CTNAG	1 cut(s)	957
DpnI	GATC	1 cut(s)	716
DpnII	GATC	1 cut(s)	714
DraI	TTTAAA	1 cut(s)	21
DraIII	CACNNNGTG	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco130I	CCWWGG	2 cut(s)	656, 881
Eco24I	GRGCYC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	671
Eco47III	AGCGCT	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	957
Eco88I	CYCGRG	2 cut(s)	710, 772
EcoO109I	RGGNCCY	1 cut(s)	607
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	656, 881
EcoT22I	ATGCAT	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	701
ErhI	CCWWGG	2 cut(s)	656, 881
FaeI	CATG	3 cut(s)	832, 885, 896
FatI	CATG	3 cut(s)	828, 881, 892
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	5 cut(s)	180, 420, 451, 498, 887
FokI	GGATG	5 cut(s)	68, 146, 515, 575, 753
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	5 cut(s)	180, 420, 451, 498, 887
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	5 cut(s)	180, 420, 451, 498, 887
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	16, 609, 955
HapII	CCGG	2 cut(s)	476, 674
HgaI	GACGC	1 cut(s)	917
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	832, 885, 896
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	4 cut(s)	347, 467, 844, 1001
HpaII	CCGG	2 cut(s)	476, 674
HphI	GGTGA	2 cut(s)	383, 580
Hpy166II	GTNNAC	2 cut(s)	6, 62
Hpy188I	TCNGA	1 cut(s)	763
Hpy188III	TCNNGA	6 cut(s)	401, 712, 774, 829, 893, 968
Hpy8I	GTNNAC	2 cut(s)	6, 62
HpyAV	CCTTC	3 cut(s)	337, 453, 734
HpyCH4V	TGCA	5 cut(s)	11, 39, 182, 213, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 494, 886
HpyF3I	CTNAG	1 cut(s)	957
Hsp92II	CATG	3 cut(s)	832, 885, 896
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	1 cut(s)	714
Lsp1109I	GCAGC	5 cut(s)	166, 406, 437, 484, 873
LweI	GCATC	1 cut(s)	758
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	1 cut(s)	716
MboI	GATC	1 cut(s)	714
MboII	GAAGA	5 cut(s)	209, 476, 746, 808, 932
MflI	RGATCY	1 cut(s)	714
MhlI	GDGCHC	1 cut(s)	701
MluCI	AATT	5 cut(s)	26, 246, 599, 727, 1014
MlyI	GAGTC	1 cut(s)	995
MnlI	CCTC	7 cut(s)	502, 535, 559, 624, 781, 898, 952
Mph1103I	ATGCAT	1 cut(s)	751
MseI	TTAA	3 cut(s)	20, 219, 249
MslI	CAYNNNNRTG	2 cut(s)	258, 666
MspA1I	CMGCKG	3 cut(s)	450, 488, 560
MspI	CCGG	2 cut(s)	476, 674
MspR9I	CCNGG	2 cut(s)	231, 477
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	185, 494, 886
NciI	CCSGG	1 cut(s)	477
NcoI	CCATGG	1 cut(s)	881
NdeII	GATC	1 cut(s)	714
NlaIII	CATG	3 cut(s)	832, 885, 896
NlaIV	GGNNCC	3 cut(s)	235, 608, 716
NsiI	ATGCAT	1 cut(s)	751
NspV	TTCGAA	1 cut(s)	842
PagI	TCATGA	2 cut(s)	828, 892
PfeI	GAWTC	3 cut(s)	347, 467, 844
PkrI	GCNGC	5 cut(s)	181, 421, 452, 499, 888
PleI	GAGTC	1 cut(s)	995
PpsI	GAGTC	1 cut(s)	995
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	235, 608, 716
PspPI	GGNCC	2 cut(s)	607, 671
PsuI	RGATCY	1 cut(s)	714
PvuII	CAGCTG	2 cut(s)	450, 488
RsaI	GTAC	5 cut(s)	61, 522, 708, 983, 992
RsaNI	GTAC	5 cut(s)	60, 521, 707, 982, 991
RseI	CAYNNNNRTG	2 cut(s)	258, 666
SaqAI	TTAA	3 cut(s)	20, 219, 249
SatI	GCNGC	5 cut(s)	180, 420, 451, 498, 887
Sau3AI	GATC	1 cut(s)	714
Sau96I	GGNCC	2 cut(s)	607, 671
ScaI	AGTACT	1 cut(s)	708
SchI	GAGTC	1 cut(s)	995
ScrFI	CCNGG	2 cut(s)	231, 477
SduI	GDGCHC	1 cut(s)	701
SfaNI	GCATC	1 cut(s)	758
SfcI	CTRYAG	2 cut(s)	720, 873
SfuI	TTCGAA	1 cut(s)	842
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	2 cut(s)	258, 666
Sse9I	AATT	5 cut(s)	26, 246, 599, 727, 1014
SsiI	CCGC	2 cut(s)	139, 560
SspI	AATATT	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	229, 475
StyI	CCWWGG	2 cut(s)	656, 881
TaqI	TCGA	2 cut(s)	842, 900
TasI	AATT	5 cut(s)	26, 246, 599, 727, 1014
TatI	WGTACW	3 cut(s)	706, 981, 990
TfiI	GAWTC	3 cut(s)	347, 467, 844
Tru1I	TTAA	3 cut(s)	20, 219, 249
Tru9I	TTAA	3 cut(s)	20, 219, 249
TscAI	CASTG	1 cut(s)	134
TseI	GCWGC	5 cut(s)	179, 419, 450, 497, 886
TspDTI	ATGAA	3 cut(s)	320, 390, 881
TspRI	CASTG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	2 cut(s)	727, 1014
XcmI	CCANNNNNNNNNTGG	1 cut(s)	654
ZrmI	AGTACT	1 cut(s)	708
Zsp2I	ATGCAT	1 cut(s)	751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.