Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037704.1

Orthogroup ID

OG0007972

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1787

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037704.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 727 bp

gatttttgctggatacaacaaactagtcagggtgtttgatttacatcgccctggtagagattacaaccagtattcgactgttcaaggaaataaagaaggccaaacaggtataatgtctgcaatggctttttctccaacccataatggaatgctagctataggctcttacagcaagactactgcaatatatagagaagataatatggaacttttatatgtattacatggacatgaaggtgggattacacatgtccagttctcaaaggatggaaattacttgtatactggaggtcggaaggatccttatatactatgctgggatatacgcaaatctgttgatgttgtctacaagttatataggtctgcagaacataccaaccagcggattctgtttgatattgagccacttggccgccatctttgtacaggtggtcaggatggttttgttcatatatatgatcttcaaactggacaatgggtgtcaggcttccaagctgcattggatactgttaatggattctcttttcatccctttctgccaatggctacaacttcttcaggccaccgaagatttcttcctcctgatgatgggattgacgaattgcatttgagtggtcatgaaaactgtgcttctgtgtggagtttctctgttgcttcaatggaagagaacgttgttgaaattaatggcaatgatcacaacagccagaaccggctccagaatctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005697 GO:0006996 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0015030 GO:0016043 GO:0016604 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032202 GO:0032203 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

241

Amino Acids

27.14

Weight (kDa)

5.98

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21520 AT4G21520
fragaria_vesca	FvH4_3g04030 FvH4_3g04030 FvH4_3g04030 FvH4_3g04030 FvH4_3g04030 FvH4_3g04030
malus_domestica	MD05G1325300.v1.1 MD10G1303200.v1.1
prunus_persica	Prupe.4G036600_v2.0.a1
pyrus_communis	pycom05g29930 pycom10g25570
rosa_chinensis	RchiOBHm_Chr5g0006371
rosa_laevigata	RLG00000031362
rosa_multiflora	Rmu_sc0037704.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069560
rosa_rugosa	Rorug04G0421200 Rorug04G0421200
rosa_samantha	Rh5AG049200 Rh5BG048500 Rh5CG056700 Rh5DG047800
rosa_wichuraiana	Rw5G004900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	282, 346
AciI	CCGC	2 cut(s)	383, 413
AclI	AACGTT	1 cut(s)	670
AclWI	GGATC	2 cut(s)	294, 307
AcoI	YGGCCR	1 cut(s)	410
AcuI	CTGAAG	1 cut(s)	541
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	382, 588
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	84, 465, 658, 678
AhlI	ACTAGT	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	156, 495
AluI	AGCT	2 cut(s)	156, 495
AlwI	GGATC	2 cut(s)	294, 307
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	3 cut(s)	98, 410, 560
ApeKI	GCWGC	1 cut(s)	495
AseI	ATTAAT	1 cut(s)	682
AsuNHI	GCTAGC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	4 cut(s)	261, 424, 432, 582
BciT130I	CCWGG	1 cut(s)	52
BciVI	GTATCC	2 cut(s)	6, 497
BclI	TGATCA	1 cut(s)	692
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 153
BfmI	CTRYAG	3 cut(s)	157, 364, 723
BfuI	GTATCC	2 cut(s)	6, 497
BisI	GCNGC	2 cut(s)	413, 496
BlsI	GCNGC	2 cut(s)	414, 497
Bme1390I	CCNGG	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	301, 714
BmrFI	CCNGG	1 cut(s)	52
BmtI	GCTAGC	1 cut(s)	156
BpmI	CTGGAG	2 cut(s)	307, 699
BsaBI	GATNNNNATC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 588
Bse118I	RCCGGY	1 cut(s)	709
Bse1I	ACTGG	4 cut(s)	68, 254, 290, 473
Bse3DI	GCAATG	2 cut(s)	127, 695
Bse8I	GATNNNNATC	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	3 cut(s)	272, 443, 527
BseJI	GATNNNNATC	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	382, 588
BseMI	GCAATG	2 cut(s)	127, 695
BseNI	ACTGG	4 cut(s)	68, 254, 290, 473
BseXI	GCAGC	1 cut(s)	482
BseYI	CCCAGC	1 cut(s)	316
BshFI	GGCC	3 cut(s)	100, 412, 562
BsiSI	CCGG	1 cut(s)	710
BslI	CCNNNNNNNGG	2 cut(s)	382, 588
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	100, 412, 562
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	299, 458, 692
BspACI	CCGC	2 cut(s)	383, 413
BspANI	GGCC	3 cut(s)	100, 412, 562
BspHI	TCATGA	1 cut(s)	617
BspLI	GGNNCC	2 cut(s)	301, 714
BspMAI	CTGCAG	1 cut(s)	368
BspOI	GCTAGC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	294, 307
BsrDI	GCAATG	2 cut(s)	127, 695
BsrFI	RCCGGY	1 cut(s)	709
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	4 cut(s)	68, 254, 290, 473
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	3 cut(s)	299, 458, 692
BssNAI	GTATAC	1 cut(s)	283
Bst1107I	GTATAC	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	3 cut(s)	80, 509, 627
Bst6I	CTCTTC	1 cut(s)	658
BstAUI	TGTACA	1 cut(s)	423
BstC8I	GCNNGC	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	272, 443, 527
BstKTI	GATC	3 cut(s)	302, 461, 695
BstMBI	GATC	3 cut(s)	299, 458, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	3 cut(s)	157, 364, 723
BstV1I	GCAGC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BstZ17I	GTATAC	1 cut(s)	283
BsuI	GTATCC	2 cut(s)	6, 497
BsuRI	GGCC	3 cut(s)	100, 412, 562
BtgZI	GCGATG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	272, 443, 527
Cac8I	GCNNGC	1 cut(s)	154
CaiI	CAGNNNCTG	1 cut(s)	722
CciI	TCATGA	1 cut(s)	617
Cfr10I	RCCGGY	1 cut(s)	709
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	4 cut(s)	225, 231, 249, 618
CviQI	GTAC	1 cut(s)	424
DpnI	GATC	3 cut(s)	301, 460, 694
DpnII	GATC	3 cut(s)	299, 458, 692
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
Eco57I	CTGAAG	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	50
FaeI	CATG	4 cut(s)	228, 234, 252, 621
FatI	CATG	4 cut(s)	224, 230, 248, 617
FbaI	TGATCA	1 cut(s)	692
FblI	GTMKAC	2 cut(s)	282, 346
Fnu4HI	GCNGC	2 cut(s)	413, 496
FokI	GGATG	3 cut(s)	279, 450, 514
Fsp4HI	GCNGC	2 cut(s)	413, 496
FspBI	CTAG	2 cut(s)	24, 153
GluI	GCNGC	2 cut(s)	413, 496
GsaI	CCCAGC	1 cut(s)	320
GsuI	CTGGAG	2 cut(s)	307, 699
HaeIII	GGCC	3 cut(s)	100, 412, 562
HapII	CCGG	1 cut(s)	710
Hin1II	CATG	4 cut(s)	228, 234, 252, 621
HinfI	GANTC	3 cut(s)	386, 517, 719
HpaII	CCGG	1 cut(s)	710
Hpy166II	GTNNAC	2 cut(s)	283, 347
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	4 cut(s)	435, 582, 618, 716
Hpy8I	GTNNAC	2 cut(s)	283, 347
HpyAV	CCTTC	3 cut(s)	90, 228, 290
HpyCH4III	ACNGT	3 cut(s)	80, 509, 627
HpyCH4IV	ACGT	1 cut(s)	670
HpyCH4V	TGCA	5 cut(s)	120, 183, 366, 498, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	670
Hsp92II	CATG	4 cut(s)	228, 234, 252, 621
Ksp22I	TGATCA	1 cut(s)	692
Kzo9I	GATC	3 cut(s)	299, 458, 692
LmnI	GCTCC	1 cut(s)	718
Lsp1109I	GCAGC	1 cut(s)	482
MaeI	CTAG	2 cut(s)	24, 153
MaeII	ACGT	1 cut(s)	670
MalI	GATC	3 cut(s)	301, 460, 694
MboI	GATC	3 cut(s)	299, 458, 692
MboII	GAAGA	6 cut(s)	207, 453, 547, 567, 580, 675
MflI	RGATCY	1 cut(s)	299
MluCI	AATT	3 cut(s)	272, 600, 679
MmeI	TCCRAC	2 cut(s)	159, 273
MnlI	CCTC	2 cut(s)	282, 589
MseI	TTAA	2 cut(s)	511, 682
MslI	CAYNNNNRTG	4 cut(s)	229, 235, 454, 610
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	3 cut(s)	299, 458, 692
NheI	GCTAGC	1 cut(s)	152
NlaIII	CATG	4 cut(s)	228, 234, 252, 621
NlaIV	GGNNCC	2 cut(s)	301, 714
NspI	RCATGY	1 cut(s)	252
PagI	TCATGA	1 cut(s)	617
PciI	ACATGT	1 cut(s)	248
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	386, 517, 719
PkrI	GCNGC	2 cut(s)	414, 497
PscI	ACATGT	1 cut(s)	248
PshBI	ATTAAT	1 cut(s)	682
Psp1406I	AACGTT	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	301, 714
PstI	CTGCAG	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	4 cut(s)	229, 235, 454, 610
SaqAI	TTAA	2 cut(s)	511, 682
SatI	GCNGC	2 cut(s)	413, 496
Sau3AI	GATC	3 cut(s)	299, 458, 692
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	8 cut(s)	110, 158, 239, 293, 363, 431, 497, 673
SfcI	CTRYAG	3 cut(s)	157, 364, 723
SmiMI	CAYNNNNRTG	4 cut(s)	229, 235, 454, 610
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	3 cut(s)	272, 600, 679
SsiI	CCGC	2 cut(s)	383, 413
SspMI	CTAG	2 cut(s)	24, 153
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	3 cut(s)	80, 509, 627
TaiI	ACGT	1 cut(s)	673
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	272, 600, 679
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	1 cut(s)	415
TfiI	GAWTC	3 cut(s)	386, 517, 719
Tru1I	TTAA	2 cut(s)	511, 682
Tru9I	TTAA	2 cut(s)	511, 682
TseI	GCWGC	1 cut(s)	495
TspDTI	ATGAA	4 cut(s)	247, 438, 516, 634
VspI	ATTAAT	1 cut(s)	682
XceI	RCATGY	1 cut(s)	252
XmiI	GTMKAC	2 cut(s)	282, 346
XspI	CTAG	2 cut(s)	24, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.