Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0007972

Physical Location & Seq

Genomic Coordinates Forward (+)

30243693 .. 30246958

Gene Structure 3266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCCGAAGAAGAAGAGCGGCAGCAGTACCAACCCAATTTGCCCTCTCCAGATACAGAAATTACAGAAAACCCAACCCATCAACGGCAAGAAGATTACTCTTGGCCGGCGATTCGGTTCGATGTTCATCCGCACAGAGCCTTCCATTTCCGCCACCAGTTCCGAACTTCCCCAATTCCGAACAACTTTCTCGAGGGCGTCAAATGGTCGCCGGATGGGTCGTGCTTTCTTACCAGTTCCGAGGACAACACGCTTCGTGTTTTCGCATTACCGGATTATGGGAGTGAGAATGCTAATGATTGTTCTGTAGCTGCTGATGAAGCTGCAGATTCGTACGCTGCAAACCTTGTTGTGAACGAGGGAGAGTCTGTATACGACTTCTGTTGGTACCCGTACATGTCTGCTTCAGACCCAATTACCTGTGTTTTTGCAACTACATCTCGTGACCATCCAATTCATCTTTGGGATGCTTCTTCTGGACAGCTACGTTGCACTTATCGTGCTTATGATGCCGTGGATGAAATCACAGCTGCTTTTTCAATTGCCTTTAATCCTACTGGAACAAAGATTTTTGCTGGATACAACAAATCTGTTCGGGTGTTTGATTTACACAACCCTGGTAGGGATTTTGAACAATATTCGACCCTTCAAGGAAACAAAGAAGGCCAAACAGGTATTATGTCCGCAATGGCTTTTTGTCCAACCCATAGTGGAATGCTTGCTATAGGTTCTTATAGCAAGACTGCTGCAATATATAGAGAAGATAATATGGAACCCTTGTATGTATTGCATGGTCATGAAGGCGGGATTACACATGTCCAGTTTTCAAAGGATGGAAATTATTTATATACTGGAGGCAGAAAGGATCCTTATATATTATGCTGGGATATACGCAAAACGGTTGATGTTGTGTACAAGTTATATAGGTCATCGGAAGATACCAACCAACGGATTTTGTTTGATATTGAGCCACTTGGACGCCATCTTTGTACAGGTGGTCAGGATGGTGTTGTGCATATCTATGATCTGCAAACTGGACAATGGGTATCAGGCTTCCAAGCGGCATTGGATACTGTTAACGGATTCTCCTTTCATCCCTTTCTGCCAATGGCTACCACTTCTTCGGGGCATCGAAGATTTGTTGATCCTGATGATGGCAATGACGAGTTTCATCTGAGTGCTGACGAAAACTGTGCTTCCGTGTGGAGCTTCTCTGTTGCTTCAATGGTGGAGAATGATGGTGCAATGGACGGCGATGATTATAACAGCCACAACCTTGACCAGCATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005697 GO:0006996 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0015030 GO:0016043 GO:0016604 GO:0019219 GO:0019222 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032200 GO:0032202 GO:0032203 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051276 GO:0051338 GO:0051347 GO:0051972 GO:0051973 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

431

Amino Acids

48.32

Weight (kDa)

4.76

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21520 AT4G21520
fragaria_vesca	FvH4_3g04030 FvH4_3g04030 FvH4_3g04030 FvH4_3g04030 FvH4_3g04030 FvH4_3g04030
malus_domestica	MD05G1325300.v1.1 MD10G1303200.v1.1
prunus_persica	Prupe.4G036600_v2.0.a1
pyrus_communis	pycom05g29930 pycom10g25570
rosa_chinensis	RchiOBHm_Chr5g0006371
rosa_laevigata	RLG00000031362
rosa_multiflora	Rmu_sc0037704.1_g000001
rosa_roxburghii	Rroxscaffold_1G00069560
rosa_rugosa	Rorug04G0421200 Rorug04G0421200
rosa_samantha	Rh5AG049200 Rh5BG048500 Rh5CG056700 Rh5DG047800
rosa_wichuraiana	Rw5G004900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1263
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	19
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	6 cut(s)	19, 131, 151, 684, 804, 1061
AclWI	GGATC	3 cut(s)	860, 873, 1139
AcoI	YGGCCR	2 cut(s)	3, 104
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	2 cut(s)	198, 979
AfaI	GTAC	6 cut(s)	29, 335, 389, 395, 914, 991
AfiI	CCNNNNNNNGG	5 cut(s)	84, 278, 622, 948, 1154
AflIII	ACRYGT	2 cut(s)	396, 814
AgsI	TTSAA	5 cut(s)	540, 632, 650, 828, 1224
AjnI	CCWGG	1 cut(s)	616
AluBI	AGCT	5 cut(s)	311, 323, 484, 530, 1209
AluI	AGCT	5 cut(s)	311, 323, 484, 530, 1209
AlwI	GGATC	3 cut(s)	860, 873, 1139
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	3, 104, 664
ApeKI	GCWGC	6 cut(s)	22, 311, 323, 338, 530, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	969, 1001
Asp718I	GGTACC	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	441
BbvI	GCAGC	6 cut(s)	34, 298, 310, 325, 517, 733
BccI	CCATC	8 cut(s)	87, 209, 456, 827, 990, 998, 1148, 1232
BceAI	ACGGC	3 cut(s)	101, 497, 1267
BcgI	CGANNNNNNTGC	2 cut(s)	1175, 1209
BciT130I	CCWGG	1 cut(s)	618
BciVI	GTATCC	2 cut(s)	572, 1063
BfaI	CTAG	1 cut(s)	1291
BfmI	CTRYAG	3 cut(s)	306, 324, 723
BfuI	GTATCC	2 cut(s)	572, 1063
BisI	GCNGC	8 cut(s)	20, 23, 312, 324, 339, 531, 747, 1062
BlsI	GCNGC	8 cut(s)	21, 24, 313, 325, 340, 532, 748, 1063
Bme1390I	CCNGG	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	3 cut(s)	389, 774, 867
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	3 cut(s)	457, 499, 1138
BpmI	CTGGAG	2 cut(s)	33, 873
BsaBI	GATNNNNATC	1 cut(s)	126
BsaHI	GRCGYC	2 cut(s)	198, 979
BsaJI	CCNNGG	3 cut(s)	240, 513, 616
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 1070, 1100
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 278, 622, 948, 1154
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	6 cut(s)	157, 234, 562, 820, 856, 1039
Bse3DI	GCAATG	3 cut(s)	693, 1165, 1251
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	3 cut(s)	240, 513, 616
BseGI	GGATG	9 cut(s)	127, 220, 448, 472, 523, 838, 1009, 1093, 1285
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	5 cut(s)	84, 278, 622, 948, 1154
BseMI	GCAATG	3 cut(s)	693, 1165, 1251
BseMII	CTCAG	1 cut(s)	1166
BseNI	ACTGG	6 cut(s)	157, 234, 562, 820, 856, 1039
BseXI	GCAGC	6 cut(s)	34, 298, 310, 325, 517, 733
BseYI	CCCAGC	1 cut(s)	882
BshFI	GGCC	3 cut(s)	5, 106, 666
BshNI	GGYRCC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	107, 212, 272
BsiWI	CGTACG	1 cut(s)	333
BslI	CCNNNNNNNGG	5 cut(s)	84, 278, 622, 948, 1154
BsmI	GAATGC	2 cut(s)	295, 720
BsnI	GGCC	3 cut(s)	5, 106, 666
BsoBI	CYCGRG	1 cut(s)	191
Bsp1407I	TGTACA	2 cut(s)	912, 989
Bsp143I	GATC	3 cut(s)	865, 1024, 1144
BspACI	CCGC	6 cut(s)	19, 131, 151, 684, 804, 1061
BspANI	GGCC	3 cut(s)	5, 106, 666
BspCNI	CTCAG	1 cut(s)	1167
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	3 cut(s)	389, 774, 867
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	3 cut(s)	860, 873, 1139
BspQI	GCTCTTC	1 cut(s)	9
BspT107I	GGYRCC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	19
BsrDI	GCAATG	3 cut(s)	693, 1165, 1251
BsrFI	RCCGGY	1 cut(s)	106
BsrGI	TGTACA	2 cut(s)	912, 989
BsrI	ACTGG	6 cut(s)	157, 234, 562, 820, 856, 1039
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	240, 513, 616
BssMI	GATC	3 cut(s)	865, 1024, 1144
BssNAI	GTATAC	1 cut(s)	373
BssNI	GRCGYC	2 cut(s)	198, 979
BssSI	CACGAG	1 cut(s)	441
Bst1107I	GTATAC	1 cut(s)	373
Bst2BI	CACGAG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	901, 1075, 1193
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	198, 979
BstAUI	TGTACA	2 cut(s)	912, 989
BstC8I	GCNNGC	2 cut(s)	108, 720
BstDEI	CTNAG	1 cut(s)	1175
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	9 cut(s)	127, 220, 448, 472, 523, 838, 1009, 1093, 1285
BstKTI	GATC	3 cut(s)	868, 1027, 1147
BstMBI	GATC	3 cut(s)	865, 1024, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 509
BstNI	CCWGG	1 cut(s)	618
BstNSI	RCATGY	2 cut(s)	400, 818
BstSCI	CCNGG	1 cut(s)	616
BstSFI	CTRYAG	3 cut(s)	306, 324, 723
BstV1I	GCAGC	6 cut(s)	34, 298, 310, 325, 517, 733
BstX2I	RGATCY	1 cut(s)	865
BstYI	RGATCY	1 cut(s)	865
BstZ17I	GTATAC	1 cut(s)	373
BsuI	GTATCC	2 cut(s)	572, 1063
BsuRI	GGCC	3 cut(s)	5, 106, 666
BtgI	CCRYGG	1 cut(s)	513
BtgZI	GCGATG	1 cut(s)	1269
BtsCI	GGATG	9 cut(s)	127, 220, 448, 472, 523, 838, 1009, 1093, 1285
Cac8I	GCNNGC	2 cut(s)	108, 720
CciI	TCATGA	1 cut(s)	796
Cfr10I	RCCGGY	1 cut(s)	106
CseI	GACGC	2 cut(s)	187, 987
Csp6I	GTAC	6 cut(s)	28, 334, 388, 394, 913, 990
CviAII	CATG	4 cut(s)	397, 791, 797, 815
CviQI	GTAC	6 cut(s)	28, 334, 388, 394, 913, 990
DdeI	CTNAG	1 cut(s)	1175
DpnI	GATC	3 cut(s)	867, 1026, 1146
DpnII	GATC	3 cut(s)	865, 1024, 1144
EaeI	YGGCCR	2 cut(s)	3, 104
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	616
FaeI	CATG	4 cut(s)	400, 794, 800, 818
FatI	CATG	4 cut(s)	396, 790, 796, 814
FauI	CCCGC	1 cut(s)	797
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	8 cut(s)	20, 23, 312, 324, 339, 531, 747, 1062
FokI	GGATG	9 cut(s)	114, 227, 435, 479, 530, 845, 1016, 1080, 1272
Fsp4HI	GCNGC	8 cut(s)	20, 23, 312, 324, 339, 531, 747, 1062
FspBI	CTAG	1 cut(s)	1291
GluI	GCNGC	8 cut(s)	20, 23, 312, 324, 339, 531, 747, 1062
GsaI	CCCAGC	1 cut(s)	886
GsuI	CTGGAG	2 cut(s)	33, 873
HaeIII	GGCC	3 cut(s)	5, 106, 666
HapII	CCGG	3 cut(s)	107, 212, 272
HgaI	GACGC	2 cut(s)	187, 987
Hin1I	GRCGYC	2 cut(s)	198, 979
Hin1II	CATG	4 cut(s)	400, 794, 800, 818
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HinfI	GANTC	4 cut(s)	112, 329, 365, 1083
HpaI	GTTAAC	1 cut(s)	1078
HpaII	CCGG	3 cut(s)	107, 212, 272
Hpy166II	GTNNAC	4 cut(s)	355, 373, 913, 1078
Hpy188I	TCNGA	6 cut(s)	164, 180, 241, 409, 934, 1176
Hpy188III	TCNNGA	7 cut(s)	50, 191, 443, 477, 797, 1001, 1148
Hpy8I	GTNNAC	4 cut(s)	355, 373, 913, 1078
HpyAV	CCTTC	4 cut(s)	151, 656, 656, 794
HpyCH4III	ACNGT	3 cut(s)	901, 1075, 1193
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	9 cut(s)	326, 341, 431, 492, 749, 790, 1015, 1030, 1244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 509
HpyF3I	CTNAG	1 cut(s)	1175
HpySE526I	ACGT	1 cut(s)	487
Hsp92I	GRCGYC	2 cut(s)	198, 979
Hsp92II	CATG	4 cut(s)	400, 794, 800, 818
KpnI	GGTACC	1 cut(s)	391
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
KspAI	GTTAAC	1 cut(s)	1078
Kzo9I	GATC	3 cut(s)	865, 1024, 1144
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	1206
Lsp1109I	GCAGC	6 cut(s)	34, 298, 310, 325, 517, 733
LweI	GCATC	3 cut(s)	457, 499, 1138
MaeI	CTAG	1 cut(s)	1291
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	3 cut(s)	867, 1026, 1146
MbiI	CCGCTC	1 cut(s)	19
MboI	GATC	3 cut(s)	865, 1024, 1144
MboII	GAAGA	9 cut(s)	20, 23, 26, 104, 465, 773, 947, 1113, 1146
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	865
MluCI	AATT	7 cut(s)	37, 60, 174, 414, 453, 540, 838
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	725
MnlI	CCTC	5 cut(s)	55, 187, 235, 352, 848
MroNI	GCCGGC	1 cut(s)	106
MseI	TTAA	2 cut(s)	549, 1077
MslI	CAYNNNNRTG	3 cut(s)	795, 1020, 1176
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	3 cut(s)	107, 212, 272
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	540
Mva1269I	GAATGC	2 cut(s)	295, 720
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	320, 509
NaeI	GCCGGC	1 cut(s)	108
NdeII	GATC	3 cut(s)	865, 1024, 1144
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	4 cut(s)	400, 794, 800, 818
NlaIV	GGNNCC	3 cut(s)	389, 774, 867
NmuCI	GTSAC	1 cut(s)	443
NspI	RCATGY	2 cut(s)	400, 818
PaeR7I	CTCGAG	1 cut(s)	191
PagI	TCATGA	1 cut(s)	796
PciI	ACATGT	2 cut(s)	396, 814
PciSI	GCTCTTC	1 cut(s)	9
PctI	GAATGC	2 cut(s)	295, 720
PdiI	GCCGGC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	112, 329, 1083
Pfl23II	CGTACG	1 cut(s)	333
PkrI	GCNGC	8 cut(s)	21, 24, 313, 325, 340, 532, 748, 1063
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PscI	ACATGT	2 cut(s)	396, 814
PsiI	TTATAA	1 cut(s)	1263
Psp6I	CCWGG	1 cut(s)	616
PspFI	CCCAGC	1 cut(s)	882
PspGI	CCWGG	1 cut(s)	616
PspLI	CGTACG	1 cut(s)	333
PspN4I	GGNNCC	3 cut(s)	389, 774, 867
PstI	CTGCAG	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	865
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	6 cut(s)	29, 335, 389, 395, 914, 991
RsaNI	GTAC	6 cut(s)	28, 334, 388, 394, 913, 990
RseI	CAYNNNNRTG	3 cut(s)	795, 1020, 1176
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	549, 1077
SatI	GCNGC	8 cut(s)	20, 23, 312, 324, 339, 531, 747, 1062
Sau3AI	GATC	3 cut(s)	865, 1024, 1144
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	1 cut(s)	618
SfaNI	GCATC	3 cut(s)	457, 499, 1138
SfcI	CTRYAG	3 cut(s)	306, 324, 723
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	3 cut(s)	795, 1020, 1176
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	7 cut(s)	37, 60, 174, 414, 453, 540, 838
SsiI	CCGC	6 cut(s)	19, 131, 151, 684, 804, 1061
SspI	AATATT	1 cut(s)	638
SspMI	CTAG	1 cut(s)	1291
StyD4I	CCNGG	1 cut(s)	616
TaaI	ACNGT	3 cut(s)	901, 1075, 1193
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	4 cut(s)	120, 192, 641, 1132
TasI	AATT	7 cut(s)	37, 60, 174, 414, 453, 540, 838
TatI	WGTACW	2 cut(s)	912, 989
TauI	GCSGC	2 cut(s)	22, 1064
TfiI	GAWTC	3 cut(s)	112, 329, 1083
Tru1I	TTAA	2 cut(s)	549, 1077
Tru9I	TTAA	2 cut(s)	549, 1077
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	6 cut(s)	22, 311, 323, 338, 530, 746
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	7 cut(s)	116, 333, 446, 534, 813, 1082, 1160
TspGWI	ACGGA	3 cut(s)	964, 1095, 1189
XceI	RCATGY	2 cut(s)	400, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	1291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.