MD10G1303200.v1.1

Telomerase Cajal body protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
38976515 .. 38980933
4419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1303200.v1.1.491

Sequence Viewer

Length: 1314 bp
ATGGCTGATCAGCAAGCCTCAATGGGCGAAGAAGAAGAGCCGCAGCAGCAGCAGCAGCAGCAACCCAATTCGCCTTCCCCAGACGCAGAGATTACAGATAACCCAACCCAGCAACAGCAAGAATACTCTTGGCCGGCGATTCGGTTCGATGTCCATCCGCAGAGAGCCTTCCACTTCCGCCGCCAGTTCCGAACTTCCCCGACCCCCAACAACTTTCTCAAGGGCGTCAAATGGTCGCCGGATGGATCGTGCTTTCTTACCAGTTCCGAGGACAACACGCTTCGGGTTTTTGCATTGCCAGATTATGGGAGTGAGAATGCAAATGGGTGTTCTGTAGCTGCTGATGAAGATTCGTATGCTGCAAACCTTGTTGTGAATGAGGGAGAGTCTGTATACGACTTCTGTTGGTACCCGTACATGTCTGCTGCAGACCCGGTTACCTGTGTTTTTGCAACTACATCTCGTGACCATCCAATTCATCTTTGGGATGCTTCTTCTGGACAGCTACGTTGCACTTATCGTGCTTATGATGCTGTGGATGAAATCACAGCTGCTTTTTCAATTGCCTTTAATCCTACTGGAACAAAGATTTTTGCTGGATACAACAAATCTGTTCGGGTGTTTGATTTACATCGCCCTGGTAGGGATTTTGAACAATATTCTACACTTCAAGGAAACAAAGAAGGACAAACAGGTATAATGTCTGCAATGGCATTTTGTCCAACCCATAGTGGAATGCTAGCTATAGGTTCTTATAGCAAGACTGCTGCAATATATAGGGAAGATAATATGGAACCCTTGTATGTATTGCATGGTCATGAAGGTGGGATTACACATGTCCAGTTTTCAAAAGATGGAAATTATTTATATACTGGAGGCCGAAAGGATCCTTATATATTATGCTGGGATATACGCAAAGCGGTTGATGTTGTGTATAAGTTGTATAGGTCATCGGAAGATACCAACCAGCGGATTTTGTTTGATATTGAGCCACTTGGACGCCATCTTTGTACAGGCGGTCAGGATGGTGTTGTGCATATCTATGATCTGCAAACTGGACAATGGGTAACAGGCTTCCAAGCGGCATTGGATACCGTTAACGGATTCTCCTTTCATCCCTTTCTGCCATTGGCCACCACTTCTTCAGGGCATCGAAGATTTGTTGGTCCTGATGATGGCAATGAGGAATTGCATCTGAGTGGTGACGAAAACTGCGCTTCTGTGTGGAGTTTCTCTGTTGCTTCAATGGTGGAGAATGATGCTGCAATGGACGCCGATGATTATAACAGCCACAACCTCGACCAGCATCCCTAG

Protein Analysis

438

Amino Acids

48.82

Weight (kDa)

4.78

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 74 - 373 3.3e-25 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 75 - 211 4e-06 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 142 - 307 2.9e-14 Echinoderm microtubule-associated protein second beta-propeller
EIF3I PF24805 144 - 306 5.1e-06 EIF3I
WD40_Prp19 PF24814 148 - 373 2e-15 Prp19 WD40 domain
Beta-prop_EML PF23409 149 - 304 7.4e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 151 - 310 2.3e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 203 - 373 1.9e-13 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 217 - 362 1.3e-11 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 229 - 382 1.5e-14 WDR5 beta-propeller domain
WDR55 PF24796 236 - 371 2.1e-08 WDR55
WD40 PF00400 265 - 303 3.8e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1284
Acc65I GGTACC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 305
AccI GTMKAC 1 cut(s) 393
AciI CCGC 8 cut(s) 41, 158, 178, 181, 920, 970, 1017, 1082
AclWI GGATC 3 cut(s) 253, 881, 894
AcoI YGGCCR 2 cut(s) 131, 1131
AcuI CTGAAG 1 cut(s) 1128
AcyI GRCGYC 3 cut(s) 225, 1000, 1272
AfaI GTAC 3 cut(s) 410, 416, 1012
AfiI CCNNNNNNNGG 4 cut(s) 305, 643, 969, 1175
AflIII ACRYGT 2 cut(s) 417, 835
AgsI TTSAA 5 cut(s) 561, 653, 671, 849, 1245
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 4 cut(s) 338, 505, 551, 743
AluI AGCT 4 cut(s) 338, 505, 551, 743
AlwI GGATC 3 cut(s) 253, 881, 894
AoxI GGCC 3 cut(s) 131, 877, 1131
ArsI GACNNNNNNTTYG 2 cut(s) 990, 1022
Asp718I GGTACC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 1217
AspS9I GGNCC 1 cut(s) 1166
AsuC2I CCSGG 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 1214
AsuNHI GCTAGC 1 cut(s) 739
AvaII GGWCC 1 cut(s) 1166
BalI TGGCCA 1 cut(s) 1133
BamHI GGATCC 1 cut(s) 886
BanI GGYRCC 1 cut(s) 408
BauI CACGAG 1 cut(s) 462
BccI CCATC 7 cut(s) 162, 236, 477, 848, 1011, 1019, 1169
BciT130I CCWGG 1 cut(s) 639
BciVI GTATCC 2 cut(s) 593, 1084
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 434
BfaI CTAG 2 cut(s) 740, 1312
BfmI CTRYAG 3 cut(s) 333, 426, 744
BfuI GTATCC 2 cut(s) 593, 1084
Bme1390I CCNGG 2 cut(s) 434, 639
Bme18I GGWCC 1 cut(s) 1166
BmgT120I GGNCC 1 cut(s) 1166
BmiI GGNNCC 3 cut(s) 410, 795, 888
BmrFI CCNGG 2 cut(s) 434, 639
BmsI GCATC 5 cut(s) 478, 520, 1159, 1201, 1249
BmtI GCTAGC 1 cut(s) 743
BpmI CTGGAG 1 cut(s) 894
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 434
BsaBI GATNNNNATC 2 cut(s) 153, 630
BsaHI GRCGYC 3 cut(s) 225, 1000, 1272
BsaJI CCNNGG 2 cut(s) 267, 637
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 1091, 1121
Bsc4I CCNNNNNNNGG 4 cut(s) 305, 643, 969, 1175
Bse118I RCCGGY 1 cut(s) 133
Bse1I ACTGG 6 cut(s) 184, 261, 583, 841, 877, 1060
Bse3DI GCAATG 4 cut(s) 293, 714, 1186, 1272
Bse8I GATNNNNATC 2 cut(s) 153, 630
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 2 cut(s) 267, 637
BseGI GGATG 8 cut(s) 154, 247, 469, 493, 544, 1030, 1114, 1306
BseJI GATNNNNATC 2 cut(s) 153, 630
BseLI CCNNNNNNNGG 4 cut(s) 305, 643, 969, 1175
BseMI GCAATG 4 cut(s) 293, 714, 1186, 1272
BseMII CTCAG 1 cut(s) 1187
BseNI ACTGG 6 cut(s) 184, 261, 583, 841, 877, 1060
BseYI CCCAGC 2 cut(s) 108, 903
BshFI GGCC 3 cut(s) 133, 879, 1133
BshNI GGYRCC 1 cut(s) 408
BsiSI CCGG 3 cut(s) 134, 239, 434
BslI CCNNNNNNNGG 4 cut(s) 305, 643, 969, 1175
BsmI GAATGC 2 cut(s) 322, 741
BsnI GGCC 3 cut(s) 133, 879, 1133
Bsp1407I TGTACA 1 cut(s) 1010
Bsp143I GATC 4 cut(s) 7, 245, 886, 1045
BspACI CCGC 8 cut(s) 41, 158, 178, 181, 920, 970, 1017, 1082
BspANI GGCC 3 cut(s) 133, 879, 1133
BspCNI CTCAG 1 cut(s) 1188
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 3 cut(s) 410, 795, 888
BspMAI CTGCAG 1 cut(s) 430
BspOI GCTAGC 1 cut(s) 743
BspPI GGATC 3 cut(s) 253, 881, 894
BspQI GCTCTTC 1 cut(s) 30
BspT107I GGYRCC 1 cut(s) 408
BsrDI GCAATG 4 cut(s) 293, 714, 1186, 1272
BsrFI RCCGGY 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 1010
BsrI ACTGG 6 cut(s) 184, 261, 583, 841, 877, 1060
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 267, 637
BssMI GATC 4 cut(s) 7, 245, 886, 1045
BssNAI GTATAC 1 cut(s) 394
BssNI GRCGYC 3 cut(s) 225, 1000, 1272
BssSI CACGAG 1 cut(s) 462
Bst1107I GTATAC 1 cut(s) 394
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 1 cut(s) 1096
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 3 cut(s) 225, 1000, 1272
BstAUI TGTACA 1 cut(s) 1010
BstC8I GCNNGC 3 cut(s) 15, 135, 741
BstDEI CTNAG 1 cut(s) 1196
BstEII GGTNACC 1 cut(s) 436
BstF5I GGATG 8 cut(s) 154, 247, 469, 493, 544, 1030, 1114, 1306
BstHHI GCGC 1 cut(s) 1217
BstKTI GATC 4 cut(s) 10, 248, 889, 1048
BstMBI GATC 4 cut(s) 7, 245, 886, 1045
BstMWI GCNNNNNNNGC 7 cut(s) 46, 49, 52, 55, 58, 530, 1271
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 2 cut(s) 421, 839
BstPI GGTNACC 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 432, 637
BstSFI CTRYAG 3 cut(s) 333, 426, 744
BstX2I RGATCY 1 cut(s) 886
BstYI RGATCY 1 cut(s) 886
BstZ17I GTATAC 1 cut(s) 394
BsuI GTATCC 2 cut(s) 593, 1084
BsuRI GGCC 3 cut(s) 133, 879, 1133
BtgZI GCGATG 1 cut(s) 617
BtsCI GGATG 8 cut(s) 154, 247, 469, 493, 544, 1030, 1114, 1306
Cac8I GCNNGC 3 cut(s) 15, 135, 741
CciI TCATGA 1 cut(s) 817
CfoI GCGC 1 cut(s) 1217
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 1166
CseI GACGC 4 cut(s) 92, 214, 1008, 1280
Csp6I GTAC 3 cut(s) 409, 415, 1011
CviAII CATG 4 cut(s) 418, 812, 818, 836
CviQI GTAC 3 cut(s) 409, 415, 1011
DdeI CTNAG 1 cut(s) 1196
DpnI GATC 4 cut(s) 9, 247, 888, 1047
DpnII GATC 4 cut(s) 7, 245, 886, 1045
EaeI YGGCCR 2 cut(s) 131, 1131
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 1166
Eco57I CTGAAG 1 cut(s) 1128
Eco91I GGTNACC 1 cut(s) 436
EcoO65I GGTNACC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 637
FaeI CATG 4 cut(s) 421, 815, 821, 839
FatI CATG 4 cut(s) 417, 811, 817, 835
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 393
FokI GGATG 8 cut(s) 141, 254, 456, 500, 551, 1037, 1101, 1293
FspBI CTAG 2 cut(s) 740, 1312
GlaI GCGC 1 cut(s) 1216
GsaI CCCAGC 2 cut(s) 112, 907
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 3 cut(s) 133, 879, 1133
HapII CCGG 3 cut(s) 134, 239, 434
HgaI GACGC 4 cut(s) 92, 214, 1008, 1280
HhaI GCGC 1 cut(s) 1217
Hin1I GRCGYC 3 cut(s) 225, 1000, 1272
Hin1II CATG 4 cut(s) 421, 815, 821, 839
Hin6I GCGC 1 cut(s) 1215
HinP1I GCGC 1 cut(s) 1215
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HinfI GANTC 4 cut(s) 139, 350, 386, 1104
HpaI GTTAAC 1 cut(s) 1099
HpaII CCGG 3 cut(s) 134, 239, 434
HphI GGTGA 1 cut(s) 1214
Hpy166II GTNNAC 2 cut(s) 394, 1099
Hpy188I TCNGA 4 cut(s) 191, 268, 955, 1197
Hpy188III TCNNGA 5 cut(s) 464, 498, 818, 1022, 1169
Hpy8I GTNNAC 2 cut(s) 394, 1099
HpyAV CCTTC 4 cut(s) 84, 178, 677, 815
HpyCH4III ACNGT 1 cut(s) 1096
HpyCH4IV ACGT 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 7 cut(s) 46, 49, 52, 55, 58, 530, 1271
HpyF3I CTNAG 1 cut(s) 1196
HpySE526I ACGT 1 cut(s) 508
Hsp92I GRCGYC 3 cut(s) 225, 1000, 1272
Hsp92II CATG 4 cut(s) 421, 815, 821, 839
HspAI GCGC 1 cut(s) 1215
KpnI GGTACC 1 cut(s) 412
KroI GCCGGC 1 cut(s) 133
KroNI GCCGGC 1 cut(s) 135
Ksp22I TGATCA 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 1099
Kzo9I GATC 4 cut(s) 7, 245, 886, 1045
LguI GCTCTTC 1 cut(s) 30
LweI GCATC 5 cut(s) 478, 520, 1159, 1201, 1249
MaeI CTAG 2 cut(s) 740, 1312
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 4 cut(s) 436, 464, 1066, 1202
MalI GATC 4 cut(s) 9, 247, 888, 1047
MboI GATC 4 cut(s) 7, 245, 886, 1045
MboII GAAGA 9 cut(s) 41, 44, 47, 359, 486, 794, 968, 1134, 1167
MfeI CAATTG 1 cut(s) 561
MflI RGATCY 1 cut(s) 886
MlsI TGGCCA 1 cut(s) 1133
MluCI AATT 5 cut(s) 67, 474, 561, 859, 1187
MluNI TGGCCA 1 cut(s) 1133
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 746
MnlI CCTC 6 cut(s) 28, 262, 373, 869, 1177, 1307
Mox20I TGGCCA 1 cut(s) 1133
MroNI GCCGGC 1 cut(s) 133
MscI TGGCCA 1 cut(s) 1133
MseI TTAA 2 cut(s) 570, 1098
MslI CAYNNNNRTG 4 cut(s) 816, 822, 1041, 1197
Msp20I TGGCCA 1 cut(s) 1133
MspA1I CMGCKG 2 cut(s) 551, 970
MspI CCGG 3 cut(s) 134, 239, 434
MspR9I CCNGG 2 cut(s) 434, 639
MunI CAATTG 1 cut(s) 561
Mva1269I GAATGC 2 cut(s) 322, 741
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 7 cut(s) 46, 49, 52, 55, 58, 530, 1271
NaeI GCCGGC 1 cut(s) 135
NciI CCSGG 1 cut(s) 434
NdeII GATC 4 cut(s) 7, 245, 886, 1045
NgoMIV GCCGGC 1 cut(s) 133
NheI GCTAGC 1 cut(s) 739
NlaIII CATG 4 cut(s) 421, 815, 821, 839
NlaIV GGNNCC 3 cut(s) 410, 795, 888
NmuCI GTSAC 2 cut(s) 464, 1202
NspI RCATGY 2 cut(s) 421, 839
PagI TCATGA 1 cut(s) 817
PciI ACATGT 2 cut(s) 417, 835
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 2 cut(s) 322, 741
PdiI GCCGGC 1 cut(s) 135
PfeI GAWTC 3 cut(s) 139, 350, 1104
PflMI CCANNNNNTGG 1 cut(s) 305
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
PscI ACATGT 2 cut(s) 417, 835
PsiI TTATAA 1 cut(s) 1284
Psp6I CCWGG 1 cut(s) 637
PspEI GGTNACC 1 cut(s) 436
PspFI CCCAGC 2 cut(s) 108, 903
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 3 cut(s) 410, 795, 888
PspPI GGNCC 1 cut(s) 1166
PstI CTGCAG 1 cut(s) 430
PsuI RGATCY 1 cut(s) 886
PvuII CAGCTG 1 cut(s) 551
RsaI GTAC 3 cut(s) 410, 416, 1012
RsaNI GTAC 3 cut(s) 409, 415, 1011
RseI CAYNNNNRTG 4 cut(s) 816, 822, 1041, 1197
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 570, 1098
Sau3AI GATC 4 cut(s) 7, 245, 886, 1045
Sau96I GGNCC 1 cut(s) 1166
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 434, 639
SfaNI GCATC 5 cut(s) 478, 520, 1159, 1201, 1249
SfcI CTRYAG 3 cut(s) 333, 426, 744
SinI GGWCC 1 cut(s) 1166
SmiMI CAYNNNNRTG 4 cut(s) 816, 822, 1041, 1197
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 5 cut(s) 67, 474, 561, 859, 1187
SsiI CCGC 8 cut(s) 41, 158, 178, 181, 920, 970, 1017, 1082
SspI AATATT 1 cut(s) 659
SspMI CTAG 2 cut(s) 740, 1312
StyD4I CCNGG 2 cut(s) 432, 637
TaaI ACNGT 1 cut(s) 1096
TaiI ACGT 1 cut(s) 511
TaqI TCGA 3 cut(s) 147, 1153, 1299
TasI AATT 5 cut(s) 67, 474, 561, 859, 1187
TatI WGTACW 1 cut(s) 1010
TauI GCSGC 3 cut(s) 43, 183, 1085
TfiI GAWTC 3 cut(s) 139, 350, 1104
Tru1I TTAA 2 cut(s) 570, 1098
Tru9I TTAA 2 cut(s) 570, 1098
TseFI GTSAC 2 cut(s) 464, 1202
Tsp45I GTSAC 2 cut(s) 464, 1202
TspDTI ATGAA 5 cut(s) 360, 467, 555, 834, 1103
TspGWI ACGGA 1 cut(s) 1116
Van91I CCANNNNNTGG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 1166
XceI RCATGY 2 cut(s) 421, 839
XcmI CCANNNNNNNNNTGG 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 740, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.