MD05G1325300.v1.1

Telomerase Cajal body protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
45152164 .. 45155702
3539 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1325300.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGGCCGAAGAAGAAGAGCGGCAGCAGCACCAACCCAATTCGCCTTCCCCAGACGCAGAAATTACAGAACACCCAACCCAGCAACAGCAAGACGGCTACTCTTGGCCGGCGATTCGGTTCGATGTTCATCCGCACAGAGCCTTCCACTTCCGCCACCAGTTCCGAACTTCCCCAATTCCCAACAGCTTTCTCAAGGGCGTCACATGGTCGCCGGATGGGTCGTGCTTTCTTACCAGTTCCGAGGACAACACGCTTCGGGTTTTCGCATTACCAGATTATGGGAGTGAGAATGATCATGGGTGTTCTGTAGCTGCTGATGAAGATTCGTATGCTGCAAACCTTGTTGTGAACGAGGGAGAGTCTGTATACGACTTCTGTTGGTACCCATACATGTCTGCTTCAGACCCGGTTACCTGTGTTTTTGCAACTACATCTCGTGACCATCCCATTCATCTTTGGGATGCTTCTTCTGGACAGCTACGTTGCACTTATCGTGCTTATGATGCTGTGGATGAAATCACGGCTGCTTTTTCAATTGCCTTTCCTTTTCAATATTCTACTGGAACAAAGATTTTTGCTGGATACAACAAATCCGTTCGGGTGTTTGATTTACATAACCCTGGTAGGGATTTTGAACAATATTCGACACTTCAAGGAAACAAAGAAGGCCAAACGGGTATAGTGTCCGCAATGTCTTTTTGTCCAACCCATAGTGGAATGCTTGCTATAGGTTCTTACAGCAAAACTGCTGCAATATATAGCGAAGATAATATGGAACCCTTGTATGTATTGCATGGTCATGAAGGTGGGATTACACATGTCCAGTTTTCAAAGGATGGAAATTATTTATATACTGGAGCCCGAAAGGATCCTTATATATTATGCTGGGATATACGCAAAGCAGTTGATGTTGTGTACAAGTTATATAGGTCATCGGAAGATACCAACCAACGGATTTTGTTTGATATTGAGCCACTTGGACGCCATCTTTGTACAGGTGGTCAGGACGGTGTTGTGCATATCTATGATCTGCAAACTGGACAATGGGTATCAGGCTTCCAAGCGGCATTGGATACTGTTAATGGAATCTCCTTTCATCCCTTTCTGCCAATGGCTACCACTTCTTCAGGGCATCGAAGATTTGTTGATCCTGATGGTGGCAATGACAAATTGCATCTGAGTGGTGATGAAAACTGTGCTTCTGTGTGGAGTTTCTCTGTTGCTTCAATGGTGGAGAATGATGGTGCAATGGACGGTGATGATTATAACAGCCACAACCTTGACCAGCATCCCTAG

Protein Analysis

432

Amino Acids

48.12

Weight (kDa)

4.92

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 65 - 301 1.2e-16 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 134 - 301 5.9e-12 Echinoderm microtubule-associated protein second beta-propeller
EIF3I PF24805 136 - 301 4e-06 EIF3I
WD40_Prp19 PF24814 140 - 322 1.6e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 184 - 371 5.4e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 193 - 367 6e-14 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 195 - 365 1.1e-13 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 198 - 304 2.2e-06 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 211 - 362 1.2e-11 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 222 - 376 2.2e-16 WDR5 beta-propeller domain
WDR55 PF24796 228 - 368 2e-09 WDR55
WD40 PF00400 259 - 297 6.6e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1266
Acc65I GGTACC 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 381
AccB7I CCANNNNNTGG 1 cut(s) 278
AccBSI CCGCTC 1 cut(s) 19
AccI GTMKAC 1 cut(s) 366
AciI CCGC 5 cut(s) 19, 131, 151, 687, 1064
AclWI GGATC 3 cut(s) 863, 876, 1142
AcoI YGGCCR 2 cut(s) 3, 104
AcuI CTGAAG 2 cut(s) 384, 1110
AcyI GRCGYC 2 cut(s) 198, 982
AfaI GTAC 3 cut(s) 383, 917, 994
AfiI CCNNNNNNNGG 4 cut(s) 278, 625, 951, 1157
AflIII ACRYGT 2 cut(s) 390, 817
AgsI TTSAA 6 cut(s) 534, 551, 635, 653, 831, 1227
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 3 cut(s) 186, 311, 478
AluI AGCT 3 cut(s) 186, 311, 478
AlwI GGATC 3 cut(s) 863, 876, 1142
AoxI GGCC 3 cut(s) 3, 104, 667
ApeKI GCWGC 6 cut(s) 22, 25, 311, 332, 524, 749
ArsI GACNNNNNNTTYG 2 cut(s) 972, 1004
Asp718I GGTACC 1 cut(s) 381
AsuC2I CCSGG 1 cut(s) 407
AsuHPI GGTGA 2 cut(s) 1196, 1268
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 1 cut(s) 381
BanII GRGCYC 1 cut(s) 862
BauI CACGAG 1 cut(s) 435
BbvI GCAGC 6 cut(s) 34, 37, 298, 319, 511, 736
BccI CCATC 6 cut(s) 209, 450, 830, 993, 1148, 1235
BceAI ACGGC 2 cut(s) 109, 537
BciT130I CCWGG 1 cut(s) 621
BciVI GTATCC 2 cut(s) 575, 1066
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 407
BfaI CTAG 1 cut(s) 1294
BfmI CTRYAG 2 cut(s) 306, 726
BfuI GTATCC 2 cut(s) 575, 1066
BisI GCNGC 8 cut(s) 20, 23, 26, 312, 333, 525, 750, 1065
BlsI GCNGC 8 cut(s) 21, 24, 27, 313, 334, 526, 751, 1066
Bme1390I CCNGG 2 cut(s) 407, 621
BmiI GGNNCC 4 cut(s) 383, 777, 859, 870
BmrFI CCNGG 2 cut(s) 407, 621
BmsI GCATC 4 cut(s) 451, 493, 1141, 1183
BpmI CTGGAG 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 407
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 2 cut(s) 198, 982
BsaJI CCNNGG 2 cut(s) 240, 619
BsaXI ACNNNNNCTCC 2 cut(s) 348, 378
Bsc4I CCNNNNNNNGG 4 cut(s) 278, 625, 951, 1157
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 6 cut(s) 157, 234, 565, 823, 859, 1042
Bse3DI GCAATG 3 cut(s) 696, 1168, 1254
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 240, 619
BseGI GGATG 8 cut(s) 127, 220, 442, 466, 517, 841, 1096, 1288
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 4 cut(s) 278, 625, 951, 1157
BseMI GCAATG 3 cut(s) 696, 1168, 1254
BseMII CTCAG 1 cut(s) 1169
BseNI ACTGG 6 cut(s) 157, 234, 565, 823, 859, 1042
BseXI GCAGC 6 cut(s) 34, 37, 298, 319, 511, 736
BseYI CCCAGC 2 cut(s) 78, 885
BshFI GGCC 3 cut(s) 5, 106, 669
BshNI GGYRCC 1 cut(s) 381
BsiSI CCGG 3 cut(s) 107, 212, 407
BslI CCNNNNNNNGG 4 cut(s) 278, 625, 951, 1157
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 3 cut(s) 5, 106, 669
Bsp1286I GDGCHC 1 cut(s) 862
Bsp1407I TGTACA 2 cut(s) 915, 992
Bsp143I GATC 4 cut(s) 292, 868, 1027, 1147
BspACI CCGC 5 cut(s) 19, 131, 151, 687, 1064
BspANI GGCC 3 cut(s) 5, 106, 669
BspCNI CTCAG 1 cut(s) 1170
BspHI TCATGA 1 cut(s) 799
BspLI GGNNCC 4 cut(s) 383, 777, 859, 870
BspPI GGATC 3 cut(s) 863, 876, 1142
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 381
BsrBI CCGCTC 1 cut(s) 19
BsrDI GCAATG 3 cut(s) 696, 1168, 1254
BsrFI RCCGGY 1 cut(s) 106
BsrGI TGTACA 2 cut(s) 915, 992
BsrI ACTGG 6 cut(s) 157, 234, 565, 823, 859, 1042
BssAI RCCGGY 1 cut(s) 106
BssECI CCNNGG 2 cut(s) 240, 619
BssMI GATC 4 cut(s) 292, 868, 1027, 1147
BssNAI GTATAC 1 cut(s) 367
BssNI GRCGYC 2 cut(s) 198, 982
BssSI CACGAG 1 cut(s) 435
Bst1107I GTATAC 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 4 cut(s) 1010, 1078, 1196, 1256
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 2 cut(s) 198, 982
BstAUI TGTACA 2 cut(s) 915, 992
BstC8I GCNNGC 2 cut(s) 108, 723
BstDEI CTNAG 1 cut(s) 1178
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 8 cut(s) 127, 220, 442, 466, 517, 841, 1096, 1288
BstKTI GATC 4 cut(s) 295, 871, 1030, 1150
BstMBI GATC 4 cut(s) 292, 868, 1027, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 25, 503
BstNI CCWGG 1 cut(s) 621
BstNSI RCATGY 2 cut(s) 394, 821
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 2 cut(s) 405, 619
BstSFI CTRYAG 2 cut(s) 306, 726
BstV1I GCAGC 6 cut(s) 34, 37, 298, 319, 511, 736
BstX2I RGATCY 1 cut(s) 868
BstYI RGATCY 1 cut(s) 868
BstZ17I GTATAC 1 cut(s) 367
BsuI GTATCC 2 cut(s) 575, 1066
BsuRI GGCC 3 cut(s) 5, 106, 669
BtsCI GGATG 8 cut(s) 127, 220, 442, 466, 517, 841, 1096, 1288
Cac8I GCNNGC 2 cut(s) 108, 723
CciI TCATGA 1 cut(s) 799
Cfr10I RCCGGY 1 cut(s) 106
CseI GACGC 3 cut(s) 62, 187, 990
Csp6I GTAC 3 cut(s) 382, 916, 993
CviAII CATG 6 cut(s) 204, 296, 391, 794, 800, 818
CviQI GTAC 3 cut(s) 382, 916, 993
DdeI CTNAG 1 cut(s) 1178
DpnI GATC 4 cut(s) 294, 870, 1029, 1149
DpnII GATC 4 cut(s) 292, 868, 1027, 1147
EaeI YGGCCR 2 cut(s) 3, 104
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 862
Eco57I CTGAAG 2 cut(s) 384, 1110
Eco91I GGTNACC 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 862
FaeI CATG 6 cut(s) 207, 299, 394, 797, 803, 821
FatI CATG 6 cut(s) 203, 295, 390, 793, 799, 817
FbaI TGATCA 1 cut(s) 292
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 8 cut(s) 20, 23, 26, 312, 333, 525, 750, 1065
FokI GGATG 8 cut(s) 114, 227, 429, 473, 524, 848, 1083, 1275
FriOI GRGCYC 1 cut(s) 862
Fsp4HI GCNGC 8 cut(s) 20, 23, 26, 312, 333, 525, 750, 1065
FspBI CTAG 1 cut(s) 1294
GluI GCNGC 8 cut(s) 20, 23, 26, 312, 333, 525, 750, 1065
GsaI CCCAGC 2 cut(s) 82, 889
GsuI CTGGAG 1 cut(s) 876
HaeIII GGCC 3 cut(s) 5, 106, 669
HapII CCGG 3 cut(s) 107, 212, 407
HgaI GACGC 3 cut(s) 62, 187, 990
Hin1I GRCGYC 2 cut(s) 198, 982
Hin1II CATG 6 cut(s) 207, 299, 394, 797, 803, 821
HinfI GANTC 4 cut(s) 112, 323, 359, 1086
HpaII CCGG 3 cut(s) 107, 212, 407
HphI GGTGA 2 cut(s) 1196, 1268
Hpy166II GTNNAC 3 cut(s) 349, 367, 916
Hpy188I TCNGA 5 cut(s) 164, 241, 403, 937, 1179
Hpy188III TCNNGA 5 cut(s) 437, 471, 800, 1004, 1151
Hpy8I GTNNAC 3 cut(s) 349, 367, 916
HpyAV CCTTC 4 cut(s) 54, 151, 659, 797
HpyCH4III ACNGT 4 cut(s) 1010, 1078, 1196, 1256
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 9 cut(s) 335, 425, 486, 752, 793, 1018, 1033, 1174, 1247
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 503
HpyF3I CTNAG 1 cut(s) 1178
HpySE526I ACGT 1 cut(s) 481
Hsp92I GRCGYC 2 cut(s) 198, 982
Hsp92II CATG 6 cut(s) 207, 299, 394, 797, 803, 821
KpnI GGTACC 1 cut(s) 385
KroI GCCGGC 1 cut(s) 106
KroNI GCCGGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 292, 868, 1027, 1147
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 857
Lsp1109I GCAGC 6 cut(s) 34, 37, 298, 319, 511, 736
LweI GCATC 4 cut(s) 451, 493, 1141, 1183
MaeI CTAG 1 cut(s) 1294
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 3 cut(s) 199, 409, 437
MalI GATC 4 cut(s) 294, 870, 1029, 1149
MbiI CCGCTC 1 cut(s) 19
MboI GATC 4 cut(s) 292, 868, 1027, 1147
MboII GAAGA 9 cut(s) 20, 23, 26, 332, 459, 776, 950, 1116, 1149
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 6 cut(s) 37, 60, 174, 534, 841, 1169
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 728
MnlI CCTC 2 cut(s) 235, 346
MroNI GCCGGC 1 cut(s) 106
MseI TTAA 1 cut(s) 1080
MslI CAYNNNNRTG 4 cut(s) 798, 804, 1023, 1179
MspI CCGG 3 cut(s) 107, 212, 407
MspR9I CCNGG 2 cut(s) 407, 621
MunI CAATTG 1 cut(s) 534
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 2 cut(s) 25, 503
NaeI GCCGGC 1 cut(s) 108
NciI CCSGG 1 cut(s) 407
NdeII GATC 4 cut(s) 292, 868, 1027, 1147
NgoMIV GCCGGC 1 cut(s) 106
NlaIII CATG 6 cut(s) 207, 299, 394, 797, 803, 821
NlaIV GGNNCC 4 cut(s) 383, 777, 859, 870
NmuCI GTSAC 2 cut(s) 199, 437
NspI RCATGY 2 cut(s) 394, 821
PagI TCATGA 1 cut(s) 799
PciI ACATGT 2 cut(s) 390, 817
PciSI GCTCTTC 1 cut(s) 9
PctI GAATGC 1 cut(s) 723
PdiI GCCGGC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 112, 323, 1086
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 8 cut(s) 21, 24, 27, 313, 334, 526, 751, 1066
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PscI ACATGT 2 cut(s) 390, 817
PsiI TTATAA 1 cut(s) 1266
Psp6I CCWGG 1 cut(s) 619
PspEI GGTNACC 1 cut(s) 409
PspFI CCCAGC 2 cut(s) 78, 885
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 4 cut(s) 383, 777, 859, 870
PsuI RGATCY 1 cut(s) 868
RsaI GTAC 3 cut(s) 383, 917, 994
RsaNI GTAC 3 cut(s) 382, 916, 993
RseI CAYNNNNRTG 4 cut(s) 798, 804, 1023, 1179
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 1080
SatI GCNGC 8 cut(s) 20, 23, 26, 312, 333, 525, 750, 1065
Sau3AI GATC 4 cut(s) 292, 868, 1027, 1147
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 407, 621
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 4 cut(s) 451, 493, 1141, 1183
SfcI CTRYAG 2 cut(s) 306, 726
SmiMI CAYNNNNRTG 4 cut(s) 798, 804, 1023, 1179
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 6 cut(s) 37, 60, 174, 534, 841, 1169
SsiI CCGC 5 cut(s) 19, 131, 151, 687, 1064
SspI AATATT 2 cut(s) 554, 641
SspMI CTAG 1 cut(s) 1294
StyD4I CCNGG 2 cut(s) 405, 619
TaaI ACNGT 4 cut(s) 1010, 1078, 1196, 1256
TaiI ACGT 1 cut(s) 484
TaqI TCGA 3 cut(s) 120, 644, 1135
TasI AATT 6 cut(s) 37, 60, 174, 534, 841, 1169
TatI WGTACW 2 cut(s) 915, 992
TauI GCSGC 2 cut(s) 22, 1067
TfiI GAWTC 3 cut(s) 112, 323, 1086
Tru1I TTAA 1 cut(s) 1080
Tru9I TTAA 1 cut(s) 1080
TseFI GTSAC 2 cut(s) 199, 437
TseI GCWGC 6 cut(s) 22, 25, 311, 332, 524, 749
Tsp45I GTSAC 2 cut(s) 199, 437
TspDTI ATGAA 7 cut(s) 116, 333, 440, 528, 816, 1085, 1203
TspGWI ACGGA 2 cut(s) 583, 967
Van91I CCANNNNNTGG 1 cut(s) 278
XceI RCATGY 2 cut(s) 394, 821
XmiI GTMKAC 1 cut(s) 366
XspI CTAG 1 cut(s) 1294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.