Rh5DG047800

Telomerase Cajal body protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
3984987 .. 3988434
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG047800.1

Sequence Viewer

Length: 1281 bp
ATGGGAGAAGAAGAAGAGCAGCAACACCTATCCAATTCGCCCAACCCAGATACCGAAATTACCGAAAACCCAAGCCACCAGCAAGAAGAGTACTCATGGCCAGCGATTCGGTTCGATGTTCCTCCACAGAGAACCTACCACTTCTCCCAGCAGTTCAGAACTCCCTCAAAACCTAACAATTTTCTTAAGGCTGTCAAATGGTCGCCGGATGGTTCTTGCTTTCTCACCAGTTCGGAGGACAACACCCTCCGTGTTTTCGCTATACCGGAAAGTGGGAATGAATATGTTAACGGCTATTCTGCGCCAGCTGATGAAGACTCCTATGCTGCGAGCCTTGTTATCAATGAGGGAGAGTCGGTATATGACTATTGTTGGTACCCTTACATGTCTGCTTCAGACCCAGTTACCTGTGTTTTCGCAAGTACAGCTCGTGATCATCCGATTCATCTTTGGGATGCTTCTTCTGGTCAGCTACGTTGCACGTACCGTGCTTATGATGCTGTGGATGAAATCACAGCTGCCTTTTCAATTGCCTTTAATCCCGGTGGAACAAAGATTTTTGCTGGATACAACAAACTAGTCAGGGTGTTTGATTTACATCGCCCTGGTAGAGATTACAACCAGTATTCGACGGTTCAAGGAAATAAAGAAGGCCAAACAGGTATAATGTCTGCAATGGCTTTTTCTCCAACCCATAATGGAATGCTAGCTATAGGCTCTTACAGCAAGACTACTGCAATATATAGAGAAGATAATATGGAACTTTTATATGTATTACATGGACATGAAGGTGGGATTACACATGTCCAGTTCTCAAAGGATGGAAATTACTTGTATACTGGAGGTCGGAAGGATCCTTATATACTATGCTGGGATATACGCAAATCTGTTGATGTTGTCTACAAGTTATATAGGTCTGCAGAACATACCAACCAGCGGATTCTGTTTGATATTGAGCCACTTGGCCGCCATCTTTGTACAGGTGGTCAGGATGGTTTTGTTCATATATATGATCTTCAAACTGGACAATGGGTGTCCGGCTTCCAAGCTGCATTGGATACTGTTAATGGATTCTCTTTTCATCCCTTTCTGCCAATGGCTACAACTTCTTCGGGCCACCGAAGATTTCTTCCTCCTGATGATGGCATTGACGAATTGCATTTGAGTGGTCATGAAAACTGTGCTTCTGTGTGGAGTTTCTCTGTTGCTTCAATGGAAGAGAACGTTGTTGAAATTAATGGCGATGATCACAACAGCCAGAACCGGCTCCAGAATCTGTAG

Protein Analysis

426

Amino Acids

47.92

Weight (kDa)

5.04

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 62 - 362 5.2e-25 THOC3 beta-propeller domain
Beta-prop_EML_2 PF23414 132 - 297 1e-12 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 138 - 363 8.8e-15 Prp19 WD40 domain
Beta-prop_EML PF23409 139 - 293 5e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 142 - 299 6.7e-08 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 217 - 363 1.8e-14 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 218 - 371 8.9e-17 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 219 - 365 1.2e-10 CDC20/Fizzy WD40 domain
WDR55 PF24796 224 - 360 4.6e-09 WDR55
Beta-prop_TEP1_2nd PF25047 237 - 351 5.1e-10 TEP-1 second beta-propeller
WD40 PF00400 254 - 292 6.2e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 375
AccI GTMKAC 2 cut(s) 836, 900
AciI CCGC 2 cut(s) 937, 967
AclI AACGTT 1 cut(s) 1224
AclWI GGATC 2 cut(s) 848, 861
AcoI YGGCCR 2 cut(s) 98, 964
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 5 cut(s) 92, 377, 424, 485, 979
AfiI CCNNNNNNNGG 3 cut(s) 272, 936, 1142
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 2 cut(s) 384, 802
AgsI TTSAA 5 cut(s) 528, 638, 1019, 1212, 1232
AhlI ACTAGT 1 cut(s) 577
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 6 cut(s) 308, 428, 472, 518, 710, 1049
AluI AGCT 6 cut(s) 308, 428, 472, 518, 710, 1049
AlwI GGATC 2 cut(s) 848, 861
AlwNI CAGNNNCTG 1 cut(s) 1276
AoxI GGCC 4 cut(s) 98, 652, 964, 1114
ApeKI GCWGC 4 cut(s) 19, 326, 518, 1049
AseI ATTAAT 1 cut(s) 1236
Asp718I GGTACC 1 cut(s) 375
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 1114
AsuC2I CCSGG 1 cut(s) 543
AsuHPI GGTGA 1 cut(s) 217
AsuNHI GCTAGC 1 cut(s) 706
BalI TGGCCA 1 cut(s) 100
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 375
BauI CACGAG 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 4 cut(s) 31, 313, 505, 1036
BccI CCATC 5 cut(s) 203, 815, 978, 986, 1136
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 606
BciVI GTATCC 2 cut(s) 560, 1051
BclI TGATCA 2 cut(s) 433, 1246
BcnI CCSGG 1 cut(s) 543
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 2 cut(s) 578, 707
BfmI CTRYAG 3 cut(s) 711, 918, 1277
BfrI CTTAAG 1 cut(s) 185
BfuI GTATCC 2 cut(s) 560, 1051
BisI GCNGC 5 cut(s) 20, 327, 519, 967, 1050
BlsI GCNGC 5 cut(s) 21, 328, 520, 968, 1051
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 543, 606
BmgT120I GGNCC 1 cut(s) 1114
BmiI GGNNCC 3 cut(s) 377, 855, 1268
BmrFI CCNGG 2 cut(s) 543, 606
BmrI ACTGGG 1 cut(s) 395
BmsI GCATC 2 cut(s) 445, 487
BmtI GCTAGC 1 cut(s) 710
BmuI ACTGGG 1 cut(s) 395
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 2 cut(s) 861, 1253
BpuMI CCSGG 1 cut(s) 543
BsaAI YACGTR 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 597
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 342, 372
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 936, 1142
Bse118I RCCGGY 1 cut(s) 1263
Bse1I ACTGG 6 cut(s) 228, 401, 622, 808, 844, 1027
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 597
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 7 cut(s) 214, 436, 460, 511, 826, 997, 1081
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 3 cut(s) 272, 936, 1142
BseMI GCAATG 1 cut(s) 681
BseNI ACTGG 6 cut(s) 228, 401, 622, 808, 844, 1027
BseXI GCAGC 4 cut(s) 31, 313, 505, 1036
BseYI CCCAGC 2 cut(s) 147, 870
BshFI GGCC 4 cut(s) 100, 654, 966, 1116
BshNI GGYRCC 1 cut(s) 375
BsiSI CCGG 5 cut(s) 206, 266, 543, 1038, 1264
BslI CCNNNNNNNGG 3 cut(s) 272, 936, 1142
BsmI GAATGC 1 cut(s) 708
BsnI GGCC 4 cut(s) 100, 654, 966, 1116
Bsp1407I TGTACA 1 cut(s) 977
Bsp143I GATC 4 cut(s) 433, 853, 1012, 1246
BspACI CCGC 2 cut(s) 937, 967
BspANI GGCC 4 cut(s) 100, 654, 966, 1116
BspHI TCATGA 1 cut(s) 1171
BspLI GGNNCC 3 cut(s) 377, 855, 1268
BspMAI CTGCAG 1 cut(s) 922
BspOI GCTAGC 1 cut(s) 710
BspPI GGATC 2 cut(s) 848, 861
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 375
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 1263
BsrGI TGTACA 1 cut(s) 977
BsrI ACTGG 6 cut(s) 228, 401, 622, 808, 844, 1027
BssAI RCCGGY 1 cut(s) 1263
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 4 cut(s) 433, 853, 1012, 1246
BssNAI GTATAC 1 cut(s) 837
BssSI CACGAG 1 cut(s) 429
Bst1107I GTATAC 1 cut(s) 837
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 4 cut(s) 488, 634, 1063, 1181
Bst6I CTCTTC 3 cut(s) 9, 81, 1212
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 977
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 4 cut(s) 102, 306, 331, 708
BstF5I GGATG 7 cut(s) 214, 436, 460, 511, 826, 997, 1081
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 4 cut(s) 436, 856, 1015, 1249
BstMBI GATC 4 cut(s) 433, 853, 1012, 1246
BstMWI GCNNNNNNNGC 3 cut(s) 425, 497, 723
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 2 cut(s) 388, 806
BstSCI CCNGG 2 cut(s) 541, 604
BstSFI CTRYAG 3 cut(s) 711, 918, 1277
BstV1I GCAGC 4 cut(s) 31, 313, 505, 1036
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
BstZ17I GTATAC 1 cut(s) 837
BsuI GTATCC 2 cut(s) 560, 1051
BsuRI GGCC 4 cut(s) 100, 654, 966, 1116
BtgZI GCGATG 2 cut(s) 584, 1257
BtsCI GGATG 7 cut(s) 214, 436, 460, 511, 826, 997, 1081
Cac8I GCNNGC 4 cut(s) 102, 306, 331, 708
CaiI CAGNNNCTG 1 cut(s) 1276
CciI TCATGA 1 cut(s) 1171
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 1263
Cfr13I GGNCC 1 cut(s) 1114
Csp6I GTAC 5 cut(s) 91, 376, 423, 484, 978
CviAII CATG 6 cut(s) 96, 385, 779, 785, 803, 1172
CviQI GTAC 5 cut(s) 91, 376, 423, 484, 978
DpnI GATC 4 cut(s) 435, 855, 1014, 1248
DpnII GATC 4 cut(s) 433, 853, 1012, 1246
EaeI YGGCCR 2 cut(s) 98, 964
Eam1104I CTCTTC 3 cut(s) 9, 81, 1212
EarI CTCTTC 3 cut(s) 9, 81, 1212
Eco57I CTGAAG 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 604
FaeI CATG 6 cut(s) 99, 388, 782, 788, 806, 1175
FatI CATG 6 cut(s) 95, 384, 778, 784, 802, 1171
FbaI TGATCA 2 cut(s) 433, 1246
FblI GTMKAC 2 cut(s) 836, 900
Fnu4HI GCNGC 5 cut(s) 20, 327, 519, 967, 1050
FokI GGATG 7 cut(s) 221, 423, 467, 518, 833, 1004, 1068
Fsp4HI GCNGC 5 cut(s) 20, 327, 519, 967, 1050
FspBI CTAG 2 cut(s) 578, 707
GlaI GCGC 1 cut(s) 303
GluI GCNGC 5 cut(s) 20, 327, 519, 967, 1050
GsaI CCCAGC 2 cut(s) 151, 874
GsuI CTGGAG 2 cut(s) 861, 1253
HaeIII GGCC 4 cut(s) 100, 654, 966, 1116
HapII CCGG 5 cut(s) 206, 266, 543, 1038, 1264
HhaI GCGC 1 cut(s) 304
Hin1II CATG 6 cut(s) 99, 388, 782, 788, 806, 1175
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 7 cut(s) 106, 317, 353, 442, 940, 1071, 1273
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 5 cut(s) 206, 266, 543, 1038, 1264
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 3 cut(s) 289, 837, 901
Hpy188I TCNGA 5 cut(s) 158, 235, 397, 441, 849
Hpy188III TCNNGA 5 cut(s) 431, 989, 1136, 1172, 1270
Hpy8I GTNNAC 3 cut(s) 289, 837, 901
Hpy99I CGWCG 1 cut(s) 634
HpyAV CCTTC 3 cut(s) 644, 782, 844
HpyCH4III ACNGT 4 cut(s) 488, 634, 1063, 1181
HpyCH4IV ACGT 3 cut(s) 475, 482, 1224
HpyCH4V TGCA 6 cut(s) 480, 674, 737, 920, 1052, 1159
HpyF10VI GCNNNNNNNGC 3 cut(s) 425, 497, 723
HpySE526I ACGT 3 cut(s) 475, 482, 1224
Hsp92II CATG 6 cut(s) 99, 388, 782, 788, 806, 1175
HspAI GCGC 1 cut(s) 302
KpnI GGTACC 1 cut(s) 379
Ksp22I TGATCA 2 cut(s) 433, 1246
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 4 cut(s) 433, 853, 1012, 1246
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 1272
Lsp1109I GCAGC 4 cut(s) 31, 313, 505, 1036
LweI GCATC 2 cut(s) 445, 487
MaeI CTAG 2 cut(s) 578, 707
MaeII ACGT 3 cut(s) 475, 482, 1224
MaeIII GTNAC 1 cut(s) 403
MalI GATC 4 cut(s) 435, 855, 1014, 1248
MboI GATC 4 cut(s) 433, 853, 1012, 1246
MfeI CAATTG 1 cut(s) 528
MflI RGATCY 1 cut(s) 853
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 7 cut(s) 34, 57, 178, 528, 826, 1154, 1233
MluNI TGGCCA 1 cut(s) 100
MlyI GAGTC 2 cut(s) 311, 362
MmeI TCCRAC 2 cut(s) 713, 827
MnlI CCTC 7 cut(s) 132, 175, 229, 257, 340, 836, 1143
Mox20I TGGCCA 1 cut(s) 100
MscI TGGCCA 1 cut(s) 100
MseI TTAA 5 cut(s) 186, 288, 537, 1065, 1236
MslI CAYNNNNRTG 4 cut(s) 783, 789, 1008, 1164
Msp20I TGGCCA 1 cut(s) 100
MspA1I CMGCKG 3 cut(s) 308, 518, 937
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 5 cut(s) 206, 266, 543, 1038, 1264
MspR9I CCNGG 2 cut(s) 543, 606
MunI CAATTG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 708
MvaI CCWGG 1 cut(s) 606
MwoI GCNNNNNNNGC 3 cut(s) 425, 497, 723
NciI CCSGG 1 cut(s) 543
NdeII GATC 4 cut(s) 433, 853, 1012, 1246
NheI GCTAGC 1 cut(s) 706
NlaIII CATG 6 cut(s) 99, 388, 782, 788, 806, 1175
NlaIV GGNNCC 3 cut(s) 377, 855, 1268
NspI RCATGY 2 cut(s) 388, 806
PagI TCATGA 1 cut(s) 1171
PciI ACATGT 2 cut(s) 384, 802
PciSI GCTCTTC 1 cut(s) 9
PctI GAATGC 1 cut(s) 708
PfeI GAWTC 5 cut(s) 106, 442, 940, 1071, 1273
PkrI GCNGC 5 cut(s) 21, 328, 520, 968, 1051
PleI GAGTC 2 cut(s) 311, 361
PpsI GAGTC 2 cut(s) 311, 361
Ppu21I YACGTR 1 cut(s) 483
PscI ACATGT 2 cut(s) 384, 802
PshBI ATTAAT 1 cut(s) 1236
Psp1406I AACGTT 1 cut(s) 1224
Psp6I CCWGG 1 cut(s) 604
PspFI CCCAGC 2 cut(s) 147, 870
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 3 cut(s) 377, 855, 1268
PspPI GGNCC 1 cut(s) 1114
PstI CTGCAG 1 cut(s) 922
PstNI CAGNNNCTG 1 cut(s) 1276
PsuI RGATCY 1 cut(s) 853
PvuII CAGCTG 2 cut(s) 308, 518
RsaI GTAC 5 cut(s) 92, 377, 424, 485, 979
RsaNI GTAC 5 cut(s) 91, 376, 423, 484, 978
RseI CAYNNNNRTG 4 cut(s) 783, 789, 1008, 1164
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 5 cut(s) 186, 288, 537, 1065, 1236
SatI GCNGC 5 cut(s) 20, 327, 519, 967, 1050
Sau3AI GATC 4 cut(s) 433, 853, 1012, 1246
Sau96I GGNCC 1 cut(s) 1114
ScaI AGTACT 1 cut(s) 92
SchI GAGTC 2 cut(s) 311, 362
ScrFI CCNGG 2 cut(s) 543, 606
SfaNI GCATC 2 cut(s) 445, 487
SfcI CTRYAG 3 cut(s) 711, 918, 1277
SmiMI CAYNNNNRTG 4 cut(s) 783, 789, 1008, 1164
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 577
Sse9I AATT 7 cut(s) 34, 57, 178, 528, 826, 1154, 1233
SsiI CCGC 2 cut(s) 937, 967
SspMI CTAG 2 cut(s) 578, 707
StyD4I CCNGG 2 cut(s) 541, 604
TaaI ACNGT 4 cut(s) 488, 634, 1063, 1181
TaiI ACGT 3 cut(s) 478, 485, 1227
TaqI TCGA 2 cut(s) 114, 629
TasI AATT 7 cut(s) 34, 57, 178, 528, 826, 1154, 1233
TatI WGTACW 3 cut(s) 90, 422, 977
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 5 cut(s) 106, 442, 940, 1071, 1273
Tru1I TTAA 5 cut(s) 186, 288, 537, 1065, 1236
Tru9I TTAA 5 cut(s) 186, 288, 537, 1065, 1236
TseI GCWGC 4 cut(s) 19, 326, 518, 1049
TspDTI ATGAA 8 cut(s) 294, 327, 434, 522, 801, 992, 1070, 1188
TspGWI ACGGA 1 cut(s) 239
Vha464I CTTAAG 1 cut(s) 185
VspI ATTAAT 1 cut(s) 1236
XceI RCATGY 2 cut(s) 388, 806
XmiI GTMKAC 2 cut(s) 836, 900
XspI CTAG 2 cut(s) 578, 707
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.