FvH4_3g04940

Tetraspanin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014685
Physical Location & Seq
Reverse (-)
2846037 .. 2847848
1812 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04940.t1

Sequence Viewer

Length: 630 bp
ATGACGAAAATCGCAAGAGTTGTTCTGCAGGCATTGCTTAAAGCAATGAATTCGATTTTGGGACTGCTTGGAATTGCAATTGTTCTCTATGGTCTTTGGTTGGTTAGAGTTTGGGAGAGGGACATGGATAGCTCATCTTCATTTGATCAATACACTACTGCTCCATGGGTTATCTGCACTTTTATTGGGGCTGGTGTTACCTTGTGCATAATAACAGGCATCGGTCATCTTGCTGCAAACTGTGGCAGTGGTTGTTGCCTCTCTTGTTATACATTGATCATCTGTTTGCTTCTTCTATTGGAGACTGCAATGGCTGCAGATATACTTCTAAATAATGACTGGGAGAAGGATCTCCCCTATGATCCTACTGGAAAGTTCAATGATTTCAAAGATTTTGTGGAGTCAAACTTTGACATGTTCAAGTGGATAGGCCTGCTGATCATCTTAGCTCAGGCTTTTTCAATCTTATTGGCCACGGCTCTAAGGTCGATAGGGCCAGAACAAGTAGAAAACTGTGACAGTGATGAAGAGTATGCCACGGCAAGAGTCCCACTTATGAACCATATTGTTCAGCCACCAGAATACATTGTTGCTGCCAAGAATACCAGTAACTGGAATTTGAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

210

Amino Acids

23.13

Weight (kDa)

4.64

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 11 - 113 8.4e-11 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 612
AclWI GGATC 2 cut(s) 356, 357
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 2 cut(s) 49, 616
AfiI CCNNNNNNNGG 1 cut(s) 612
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 5 cut(s) 379, 388, 421, 462, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 2 cut(s) 132, 449
AluI AGCT 2 cut(s) 132, 449
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 2 cut(s) 356, 357
AlwNI CAGNNNCTG 1 cut(s) 612
AoxI GGCC 3 cut(s) 430, 471, 494
ApeKI GCWGC 3 cut(s) 233, 314, 593
ApoI RAATTY 2 cut(s) 49, 616
AspS9I GGNCC 1 cut(s) 494
BalI TGGCCA 1 cut(s) 473
BbvI GCAGC 3 cut(s) 220, 301, 580
BceAI ACGGC 2 cut(s) 492, 555
BcgI CGANNNNNNTGC 2 cut(s) 33, 67
BclI TGATCA 3 cut(s) 145, 276, 438
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 2 cut(s) 26, 315
BisI GCNGC 3 cut(s) 234, 315, 594
BlsI GCNGC 3 cut(s) 235, 316, 595
BmgT120I GGNCC 1 cut(s) 494
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 228
BmuI ACTGGG 1 cut(s) 349
Bpu10I CCTNAGC 1 cut(s) 450
BsaJI CCNNGG 3 cut(s) 164, 474, 537
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 612
Bse1I ACTGG 4 cut(s) 344, 373, 606, 617
Bse3DI GCAATG 3 cut(s) 32, 51, 315
BseDI CCNNGG 3 cut(s) 164, 474, 537
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMI GCAATG 3 cut(s) 32, 51, 315
BseMII CTCAG 1 cut(s) 464
BseNI ACTGG 4 cut(s) 344, 373, 606, 617
BseXI GCAGC 3 cut(s) 220, 301, 580
BsgI GTGCAG 1 cut(s) 160
BshFI GGCC 3 cut(s) 432, 473, 496
BslFI GGGAC 3 cut(s) 75, 134, 533
BslI CCNNNNNNNGG 1 cut(s) 612
BsmAI GTCTC 1 cut(s) 296
BsmFI GGGAC 3 cut(s) 75, 134, 533
BsnI GGCC 3 cut(s) 432, 473, 496
Bsp143I GATC 5 cut(s) 145, 276, 349, 361, 438
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 3 cut(s) 432, 473, 496
BspCNI CTCAG 1 cut(s) 463
BspMAI CTGCAG 2 cut(s) 30, 319
BspPI GGATC 2 cut(s) 356, 357
BsrDI GCAATG 3 cut(s) 32, 51, 315
BsrI ACTGG 4 cut(s) 344, 373, 606, 617
BssECI CCNNGG 3 cut(s) 164, 474, 537
BssMI GATC 5 cut(s) 145, 276, 349, 361, 438
BssT1I CCWWGG 1 cut(s) 164
Bst4CI ACNGT 3 cut(s) 242, 515, 521
Bst6I CTCTTC 1 cut(s) 522
BstAPI GCANNNNNTGC 2 cut(s) 34, 314
BstC8I GCNNGC 2 cut(s) 30, 434
BstDEI CTNAG 3 cut(s) 445, 450, 482
BstDSI CCRYGG 3 cut(s) 164, 474, 537
BstKTI GATC 5 cut(s) 148, 279, 352, 364, 441
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 5 cut(s) 145, 276, 349, 361, 438
BstMWI GCNNNNNNNGC 2 cut(s) 34, 314
BstNSI RCATGY 1 cut(s) 418
BstSFI CTRYAG 2 cut(s) 26, 315
BstV1I GCAGC 3 cut(s) 220, 301, 580
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 3 cut(s) 432, 473, 496
BtgI CCRYGG 3 cut(s) 164, 474, 537
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 253, 526
Cac8I GCNNGC 2 cut(s) 30, 434
CaiI CAGNNNCTG 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 494
CviAII CATG 3 cut(s) 124, 165, 415
DdeI CTNAG 3 cut(s) 445, 450, 482
DpnI GATC 5 cut(s) 147, 278, 351, 363, 440
DpnII GATC 5 cut(s) 145, 276, 349, 361, 438
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 164
Eco147I AGGCCT 1 cut(s) 432
EcoRI GAATTC 1 cut(s) 49
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 3 cut(s) 127, 168, 418
FaqI GGGAC 3 cut(s) 75, 134, 533
FatI CATG 3 cut(s) 123, 164, 414
FbaI TGATCA 3 cut(s) 145, 276, 438
Fnu4HI GCNGC 3 cut(s) 234, 315, 594
Fsp4HI GCNGC 3 cut(s) 234, 315, 594
GluI GCNGC 3 cut(s) 234, 315, 594
HaeIII GGCC 3 cut(s) 432, 473, 496
Hin1II CATG 3 cut(s) 127, 168, 418
HinfI GANTC 2 cut(s) 401, 546
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 3 cut(s) 242, 515, 521
HpyCH4V TGCA 7 cut(s) 28, 77, 177, 207, 236, 308, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 314
HpyF3I CTNAG 3 cut(s) 445, 450, 482
Hsp92II CATG 3 cut(s) 127, 168, 418
Ksp22I TGATCA 3 cut(s) 145, 276, 438
Kzo9I GATC 5 cut(s) 145, 276, 349, 361, 438
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 3 cut(s) 220, 301, 580
LweI GCATC 1 cut(s) 228
MaeIII GTNAC 3 cut(s) 196, 515, 608
MalI GATC 5 cut(s) 147, 278, 351, 363, 440
MboI GATC 5 cut(s) 145, 276, 349, 361, 438
MboII GAAGA 3 cut(s) 129, 284, 539
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 349
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 4 cut(s) 49, 72, 78, 616
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 2 cut(s) 410, 555
MnlI CCTC 2 cut(s) 111, 269
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MseI TTAA 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 473
MunI CAATTG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 34, 314
NcoI CCATGG 1 cut(s) 164
NdeII GATC 5 cut(s) 145, 276, 349, 361, 438
NlaIII CATG 3 cut(s) 127, 168, 418
NmuCI GTSAC 1 cut(s) 515
NspI RCATGY 1 cut(s) 418
PceI AGGCCT 1 cut(s) 432
PciI ACATGT 1 cut(s) 414
PflMI CCANNNNNTGG 1 cut(s) 612
PkrI GCNGC 3 cut(s) 235, 316, 595
PleI GAGTC 2 cut(s) 409, 554
PpsI GAGTC 2 cut(s) 409, 554
PscI ACATGT 1 cut(s) 414
PspPI GGNCC 1 cut(s) 494
PstI CTGCAG 2 cut(s) 30, 319
PstNI CAGNNNCTG 1 cut(s) 612
PsuI RGATCY 1 cut(s) 349
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 3 cut(s) 234, 315, 594
Sau3AI GATC 5 cut(s) 145, 276, 349, 361, 438
Sau96I GGNCC 1 cut(s) 494
SchI GAGTC 2 cut(s) 410, 555
SetI ASST 4 cut(s) 134, 203, 451, 488
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 2 cut(s) 26, 315
Sse9I AATT 4 cut(s) 49, 72, 78, 616
SseBI AGGCCT 1 cut(s) 432
StuI AGGCCT 1 cut(s) 432
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 242, 515, 521
TaqI TCGA 2 cut(s) 53, 488
TaqII GACCGA 1 cut(s) 212
TasI AATT 4 cut(s) 49, 72, 78, 616
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 2 cut(s) 253, 526
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 3 cut(s) 233, 314, 593
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 4 cut(s) 62, 129, 540, 572
TspRI CASTG 2 cut(s) 253, 526
Van91I CCANNNNNTGG 1 cut(s) 612
XapI RAATTY 2 cut(s) 49, 616
XceI RCATGY 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.