MD10G1295800.v1.1

Tetraspanin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014685
Physical Location & Seq
Forward (+)
38393533 .. 38395943
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1295800.v1.1.491

Sequence Viewer

Length: 741 bp
ATGGCGGCAACAGTTGTAAGAATCTGCCTGCAGTCAGTGCTGAAAGCAGTGAACTTACTTTTGGGAATGGTTGGAATTGCAATGATTTTGTATGGTCTCTGGATGGTTAGGGTTTGGCTGAGGGACATTGACGGTTCAACCTTTGATCATCATAATGTTGTTCTTCCATGGTTTACGTGCACTTCTCTTGGCGCTGGATTTACCTTATGCATAGTAACATGCATAGGTCATGTTGCTGCAAAGTATGCACATGGTTGTTGCCTCTCTTTTTACATGTTGATCATCTTTTTGGTGATTCTATTGGAGCTTGCAGTGGCTGCAGATATACTTTTAAATTCAGAATGGGAGAAGGATTTACCATATGACCCGACGGGAAAGTTCAATGATTTCAAAGATTTTGTCGAGTCAAACTTGGACATATTTCAGTGGATAGGTTTGTTCATCGTTTTGGCACAGGGGTTGTCAATCGTACTAGCCACAGCTCTAAGGTCTGCAGGGCCAAACCGAAGATCCAGCTACGACGGCGATGAAGAGTGTCCCCCGGAAAGACTCCCGCTCATAAACCCTAATAGTCACCCGCCGGAATTACATTATCACTGCCAAGAACGTGATGTAGAACAAATGGTCGGGTGGACCAAAGAGGAGATGGACCGACGGAATCTAAAGAATGCAGCGGGAATTTGTATAGTTGGCGTTCGAGCTTCGATTTGGGCCAATGATATCTTTACAGAAGGACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

247

Amino Acids

27.54

Weight (kDa)

5.3

Isoelectric Point (pI)

46.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 13 - 111 4e-09 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 556
AciI CCGC 4 cut(s) 5, 554, 578, 674
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 2 cut(s) 334, 678
AfaI GTAC 1 cut(s) 471
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 3 cut(s) 138, 382, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 4 cut(s) 307, 482, 516, 701
AluI AGCT 4 cut(s) 307, 482, 516, 701
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 178
AlwI GGATC 1 cut(s) 504
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 497, 711
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 236, 317, 671
ApoI RAATTY 2 cut(s) 334, 678
ArsI GACNNNNNNTTYG 2 cut(s) 384, 416
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 4 cut(s) 497, 633, 649, 711
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 304, 566
AvaII GGWCC 2 cut(s) 633, 649
BaeGI GKGCMC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 223, 304, 683
BccI CCATC 2 cut(s) 97, 640
BceAI ACGGC 1 cut(s) 538
BclI TGATCA 2 cut(s) 145, 279
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 473
BfmI CTRYAG 3 cut(s) 29, 318, 492
BfoI RGCGCY 1 cut(s) 195
BisI GCNGC 4 cut(s) 6, 237, 318, 672
BlsI GCNGC 4 cut(s) 7, 238, 319, 673
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 2 cut(s) 633, 649
BmgT120I GGNCC 4 cut(s) 497, 633, 649, 711
BmrFI CCNGG 1 cut(s) 542
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 542
BsaAI YACGTR 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 167, 540
Bse3DI GCAATG 1 cut(s) 87
BseDI CCNNGG 2 cut(s) 167, 540
BseGI GGATG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 656
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 3 cut(s) 223, 304, 683
BshFI GGCC 2 cut(s) 499, 713
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 542, 581
BslFI GGGAC 2 cut(s) 137, 522
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 137, 522
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 2 cut(s) 499, 713
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 182
Bsp143I GATC 3 cut(s) 145, 279, 509
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 4 cut(s) 5, 554, 578, 674
BspANI GGCC 2 cut(s) 499, 713
BspCNI CTCAG 1 cut(s) 111
BspMAI CTGCAG 3 cut(s) 33, 322, 496
BspPI GGATC 1 cut(s) 504
BspTNI GGTCTC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 87
BssECI CCNNGG 2 cut(s) 167, 540
BssMI GATC 3 cut(s) 145, 279, 509
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 13, 134
Bst6I CTCTTC 1 cut(s) 525
BstAPI GCANNNNNTGC 3 cut(s) 37, 245, 317
BstBAI YACGTR 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 29, 309
BstDEI CTNAG 2 cut(s) 119, 485
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 108
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 3 cut(s) 148, 282, 512
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 145, 279, 509
BstMWI GCNNNNNNNGC 4 cut(s) 37, 245, 317, 522
BstNSI RCATGY 2 cut(s) 222, 277
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 3 cut(s) 29, 318, 492
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 3 cut(s) 223, 304, 683
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuRI GGCC 2 cut(s) 499, 713
BtgI CCRYGG 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 3 cut(s) 54, 318, 595
BtsIMutI CAGTG 5 cut(s) 42, 54, 318, 431, 595
Cac8I GCNNGC 2 cut(s) 29, 309
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 4 cut(s) 497, 633, 649, 711
Csp6I GTAC 1 cut(s) 470
CviAII CATG 5 cut(s) 168, 219, 230, 251, 274
CviJI RGCY 9 cut(s) 118, 307, 317, 476, 482, 499, 516, 701, 713
CviKI_1 RGCY 9 cut(s) 118, 307, 317, 476, 482, 499, 516, 701, 713
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 2 cut(s) 119, 485
DpnI GATC 3 cut(s) 147, 281, 511
DpnII GATC 3 cut(s) 145, 279, 509
DraI TTTAAA 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 721
Eco47I GGWCC 2 cut(s) 633, 649
EcoRV GATATC 1 cut(s) 721
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 2 cut(s) 212, 224
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 5 cut(s) 171, 222, 233, 254, 277
FaqI GGGAC 2 cut(s) 137, 522
FatI CATG 5 cut(s) 167, 218, 229, 250, 273
FauI CCCGC 3 cut(s) 561, 585, 667
FauNDI CATATG 1 cut(s) 361
FbaI TGATCA 2 cut(s) 145, 279
Fnu4HI GCNGC 4 cut(s) 6, 237, 318, 672
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 4 cut(s) 6, 237, 318, 672
FspBI CTAG 1 cut(s) 473
GlaI GCGC 1 cut(s) 193
GluI GCNGC 4 cut(s) 6, 237, 318, 672
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 2 cut(s) 499, 713
HapII CCGG 2 cut(s) 542, 581
HhaI GCGC 1 cut(s) 194
Hin1II CATG 5 cut(s) 171, 222, 233, 254, 277
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 5 cut(s) 21, 295, 404, 549, 658
HpaII CCGG 2 cut(s) 542, 581
HphI GGTGA 2 cut(s) 304, 566
Hpy166II GTNNAC 4 cut(s) 52, 174, 180, 633
Hpy188I TCNGA 1 cut(s) 340
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 4 cut(s) 52, 174, 180, 633
Hpy99I CGWCG 3 cut(s) 373, 524, 657
HpyAV CCTTC 2 cut(s) 343, 725
HpyCH4III ACNGT 2 cut(s) 13, 134
HpyCH4IV ACGT 2 cut(s) 176, 607
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 245, 317, 522
HpyF3I CTNAG 2 cut(s) 119, 485
HpySE526I ACGT 2 cut(s) 176, 607
Hsp92II CATG 5 cut(s) 171, 222, 233, 254, 277
HspAI GCGC 1 cut(s) 192
Ksp22I TGATCA 2 cut(s) 145, 279
Kzo9I GATC 3 cut(s) 145, 279, 509
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 8 cut(s) 41, 85, 180, 440, 480, 526, 555, 594
Lsp1109I GCAGC 3 cut(s) 223, 304, 683
MaeI CTAG 1 cut(s) 473
MaeII ACGT 2 cut(s) 176, 607
MaeIII GTNAC 2 cut(s) 214, 572
MalI GATC 3 cut(s) 147, 281, 511
MbiI CCGCTC 1 cut(s) 556
MboI GATC 3 cut(s) 145, 279, 509
MboII GAAGA 3 cut(s) 155, 519, 542
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 182
MluCI AATT 4 cut(s) 75, 334, 584, 678
MlyI GAGTC 2 cut(s) 413, 543
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 114, 272, 634
Mph1103I ATGCAT 2 cut(s) 212, 224
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 2 cut(s) 542, 581
MspR9I CCNGG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 673
MwoI GCNNNNNNNGC 4 cut(s) 37, 245, 317, 522
NciI CCSGG 1 cut(s) 542
NcoI CCATGG 1 cut(s) 167
NdeI CATATG 1 cut(s) 361
NdeII GATC 3 cut(s) 145, 279, 509
NlaIII CATG 5 cut(s) 171, 222, 233, 254, 277
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 2 cut(s) 212, 224
NspI RCATGY 2 cut(s) 222, 277
PciI ACATGT 1 cut(s) 273
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 3 cut(s) 21, 295, 658
PkrI GCNGC 4 cut(s) 7, 238, 319, 673
PleI GAGTC 2 cut(s) 412, 543
PpsI GAGTC 2 cut(s) 412, 543
Ppu21I YACGTR 1 cut(s) 177
PscI ACATGT 1 cut(s) 273
PspPI GGNCC 4 cut(s) 497, 633, 649, 711
PstI CTGCAG 3 cut(s) 33, 322, 496
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 4 cut(s) 6, 237, 318, 672
Sau3AI GATC 3 cut(s) 145, 279, 509
Sau96I GGNCC 4 cut(s) 497, 633, 649, 711
SchI GAGTC 2 cut(s) 413, 543
ScrFI CCNGG 1 cut(s) 542
SduI GDGCHC 1 cut(s) 182
SfcI CTRYAG 3 cut(s) 29, 318, 492
SinI GGWCC 2 cut(s) 633, 649
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 4 cut(s) 75, 334, 584, 678
SsiI CCGC 4 cut(s) 5, 554, 578, 674
SspMI CTAG 1 cut(s) 473
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 13, 134
TaiI ACGT 2 cut(s) 179, 610
TaqI TCGA 3 cut(s) 402, 697, 704
TaqII GACCGA 1 cut(s) 666
TasI AATT 4 cut(s) 75, 334, 584, 678
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 21, 295, 658
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 5 cut(s) 42, 54, 318, 431, 602
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 3 cut(s) 236, 317, 671
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 2 cut(s) 430, 543
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 5 cut(s) 42, 54, 318, 431, 602
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 2 cut(s) 633, 649
XapI RAATTY 2 cut(s) 334, 678
XceI RCATGY 2 cut(s) 222, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XspI CTAG 1 cut(s) 473
Zsp2I ATGCAT 2 cut(s) 212, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.