Prupe.4G044700_v2.0.a1

Tetraspanin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014685
Physical Location & Seq
Reverse (-)
2143981 .. 2145845
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G044700.1

Sequence Viewer

Length: 636 bp
ATGGTAACAATTGCAAGAATATGCCTGCAGTCACTACTTAAATTAGTGAATTCAGTTTTGGGAATGGTTGGAATTGCAATGGTTTTGTATGGTCTTTGGATGGTTAGAGTTTGGCTGAGGGACATGGACAGTTCATCCGTTGATCAATATGATGCTGCTGCTGCTGCTGCTCCATGGTTTATATGCACTTTTCTTGGCGCTGGTGTTTTCTTGTGTGCCATTACATGCATAGGCTATCTTGCTGCAAAATTTGCACATGGTTGTTGCCTCTCTTGCTATATGTTGATCATCTTTATTGTTCTTCTGTTGGAGACTGCGATGACTGCAGATATACTCCTAAATTCAGACTGGGAGAAGGATTTACCCTATGACACTACAGGAAAGTTCCATGATTTCAAAGATTTCGTGAAGTCAAATTTCGACATGTTTAAGTGGATAGGCTTGTTGATCGTATTAGCACAGGGGTTTTCAATCTTATTGGCATTGGCTCTAAGGTCAGTAGAGCCAAACCAAGGATCCAGCTATGATAGCGATGAAGAGTGTCCCCCAGCAAGACTCCCACTCATAAACCCTAATGGTCAACCGCCGGAATATATCGTTGCAGCCAAGAATAATAATTGGAATTCAAACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

212

Amino Acids

23.38

Weight (kDa)

4.91

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 584
AclWI GGATC 2 cut(s) 510, 523
AcsI RAATTY 5 cut(s) 49, 248, 340, 415, 622
AfiI CCNNNNNNNGG 1 cut(s) 512
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 3 cut(s) 397, 471, 627
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 1 cut(s) 522
AluI AGCT 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 2 cut(s) 510, 523
ApeKI GCWGC 7 cut(s) 155, 158, 161, 164, 167, 242, 602
ApoI RAATTY 5 cut(s) 49, 248, 340, 415, 622
AspLEI GCGC 1 cut(s) 200
BamHI GGATCC 1 cut(s) 515
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 7 cut(s) 142, 145, 148, 151, 154, 229, 614
BccI CCATC 1 cut(s) 94
BclI TGATCA 2 cut(s) 142, 285
BcoDI GTCTC 1 cut(s) 305
BfmI CTRYAG 3 cut(s) 26, 324, 375
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 7 cut(s) 156, 159, 162, 165, 168, 243, 603
BlsI GCNGC 7 cut(s) 157, 160, 163, 166, 169, 244, 604
BmiI GGNNCC 1 cut(s) 517
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 173, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 173, 511
BseGI GGATG 2 cut(s) 105, 134
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 353
BseXI GCAGC 7 cut(s) 142, 145, 148, 151, 154, 229, 614
BseYI CCCAGC 1 cut(s) 547
BsiSI CCGG 1 cut(s) 587
BslFI GGGAC 2 cut(s) 134, 528
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 1 cut(s) 305
BsmFI GGGAC 2 cut(s) 134, 528
Bsp143I GATC 4 cut(s) 142, 285, 447, 515
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 1 cut(s) 584
BspCNI CTCAG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 517
BspMAI CTGCAG 2 cut(s) 30, 328
BspPI GGATC 2 cut(s) 510, 523
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 173, 511
BssMI GATC 4 cut(s) 142, 285, 447, 515
BssT1I CCWWGG 2 cut(s) 173, 511
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 531
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 116, 491
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 105, 134
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 4 cut(s) 145, 288, 450, 518
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 4 cut(s) 142, 285, 447, 515
BstMWI GCNNNNNNNGC 7 cut(s) 161, 164, 167, 251, 273, 323, 528
BstNSI RCATGY 2 cut(s) 228, 427
BstSFI CTRYAG 3 cut(s) 26, 324, 375
BstV1I GCAGC 7 cut(s) 142, 145, 148, 151, 154, 229, 614
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 173
BtgZI GCGATG 2 cut(s) 332, 546
BtsCI GGATG 2 cut(s) 105, 134
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 1 cut(s) 200
CviAII CATG 6 cut(s) 124, 174, 225, 257, 389, 424
CviJI RGCY 7 cut(s) 115, 234, 441, 488, 505, 522, 605
CviKI_1 RGCY 7 cut(s) 115, 234, 441, 488, 505, 522, 605
DdeI CTNAG 2 cut(s) 116, 491
DpnI GATC 4 cut(s) 144, 287, 449, 517
DpnII GATC 4 cut(s) 142, 285, 447, 515
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 173, 511
EcoRI GAATTC 2 cut(s) 49, 622
EcoT14I CCWWGG 2 cut(s) 173, 511
EcoT22I ATGCAT 1 cut(s) 230
ErhI CCWWGG 2 cut(s) 173, 511
FaeI CATG 6 cut(s) 127, 177, 228, 260, 392, 427
FaqI GGGAC 2 cut(s) 134, 528
FatI CATG 6 cut(s) 123, 173, 224, 256, 388, 423
FbaI TGATCA 2 cut(s) 142, 285
Fnu4HI GCNGC 7 cut(s) 156, 159, 162, 165, 168, 243, 603
FokI GGATG 2 cut(s) 112, 121
Fsp4HI GCNGC 7 cut(s) 156, 159, 162, 165, 168, 243, 603
GlaI GCGC 1 cut(s) 199
GluI GCNGC 7 cut(s) 156, 159, 162, 165, 168, 243, 603
GsaI CCCAGC 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 201
HapII CCGG 1 cut(s) 587
HhaI GCGC 1 cut(s) 200
Hin1II CATG 6 cut(s) 127, 177, 228, 260, 392, 427
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HincII GTYRAC 1 cut(s) 581
HindII GTYRAC 1 cut(s) 581
HinfI GANTC 1 cut(s) 555
HpaII CCGG 1 cut(s) 587
Hpy166II GTNNAC 1 cut(s) 581
Hpy188I TCNGA 1 cut(s) 346
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 581
HpyAV CCTTC 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 9 cut(s) 14, 28, 77, 186, 228, 245, 254, 326, 602
HpyF10VI GCNNNNNNNGC 7 cut(s) 161, 164, 167, 251, 273, 323, 528
HpyF3I CTNAG 2 cut(s) 116, 491
Hsp92II CATG 6 cut(s) 127, 177, 228, 260, 392, 427
HspAI GCGC 1 cut(s) 198
Ksp22I TGATCA 2 cut(s) 142, 285
Kzo9I GATC 4 cut(s) 142, 285, 447, 515
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 8 cut(s) 38, 186, 334, 363, 446, 532, 561, 600
Lsp1109I GCAGC 7 cut(s) 142, 145, 148, 151, 154, 229, 614
LweI GCATC 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 4, 30
MalI GATC 4 cut(s) 144, 287, 449, 517
MboI GATC 4 cut(s) 142, 285, 447, 515
MboII GAAGA 2 cut(s) 293, 548
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 515
MluCI AATT 9 cut(s) 9, 41, 49, 72, 248, 340, 415, 616, 622
MlyI GAGTC 1 cut(s) 549
MmeI TCCRAC 2 cut(s) 49, 288
MnlI CCTC 2 cut(s) 111, 278
Mph1103I ATGCAT 1 cut(s) 230
MseI TTAA 2 cut(s) 39, 429
MspI CCGG 1 cut(s) 587
MunI CAATTG 1 cut(s) 9
MwoI GCNNNNNNNGC 7 cut(s) 161, 164, 167, 251, 273, 323, 528
NcoI CCATGG 1 cut(s) 173
NdeII GATC 4 cut(s) 142, 285, 447, 515
NlaIII CATG 6 cut(s) 127, 177, 228, 260, 392, 427
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 2 cut(s) 228, 427
PciI ACATGT 1 cut(s) 423
PkrI GCNGC 7 cut(s) 157, 160, 163, 166, 169, 244, 604
PleI GAGTC 1 cut(s) 549
PpsI GAGTC 1 cut(s) 549
PscI ACATGT 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 547
PspN4I GGNNCC 1 cut(s) 517
PstI CTGCAG 2 cut(s) 30, 328
PsuI RGATCY 1 cut(s) 515
SaqAI TTAA 2 cut(s) 39, 429
SatI GCNGC 7 cut(s) 156, 159, 162, 165, 168, 243, 603
Sau3AI GATC 4 cut(s) 142, 285, 447, 515
SchI GAGTC 1 cut(s) 549
SetI ASST 2 cut(s) 497, 524
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 3 cut(s) 26, 324, 375
Sse9I AATT 9 cut(s) 9, 41, 49, 72, 248, 340, 415, 616, 622
SsiI CCGC 1 cut(s) 584
StyI CCWWGG 2 cut(s) 173, 511
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 420
TasI AATT 9 cut(s) 9, 41, 49, 72, 248, 340, 415, 616, 622
Tru1I TTAA 2 cut(s) 39, 429
Tru9I TTAA 2 cut(s) 39, 429
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 7 cut(s) 155, 158, 161, 164, 167, 242, 602
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 123, 549
TspGWI ACGGA 1 cut(s) 127
XapI RAATTY 5 cut(s) 49, 248, 340, 415, 622
XceI RCATGY 2 cut(s) 228, 427
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.