Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022023.1

Orthogroup ID

OG0014685

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 431

Gene Structure 430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022023.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atggcgaaaatcgcaagagtccttctgcagtcactgcttaaagcaatgaattcgattttgggactgcttggaattgcattgattctctatggtctttggatggttagagtttgggagagggacatggatagctcatcatcctttgatcaatatactactgctccatgggttatctgcacttttattggggctggtgttaccttgtgcataataacaggcataggtcatcttgctgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

79

Amino Acids

8.6

Weight (kDa)

7.81

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04940 FvH4_3g04940
malus_domestica	MD05G1314500.v1.1 MD10G1295800.v1.1
prunus_persica	Prupe.4G044700_v2.0.a1
pyrus_communis	pycom05g29240 pycom10g24840
rosa_chinensis	RchiOBHm_Chr5g0008101
rosa_laevigata	RLG00000031536
rosa_multiflora	Rmu_co8286709.1_g000001 Rmu_sc0001626.1_g000004 Rmu_sc0022023.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068380
rosa_samantha	Rh5AG061500 Rh5CG068400 Rh5DG057400
rosa_wichuraiana	Rw5G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	49
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BclI	TGATCA	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bse3DI	GCAATG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	2 cut(s)	105, 137
BseMI	GCAATG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	160
BslFI	GGGAC	2 cut(s)	75, 134
BsmFI	GGGAC	2 cut(s)	75, 134
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	164
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	2 cut(s)	105, 137
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 34
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	2 cut(s)	105, 137
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	32
CaiI	CAGNNNCTG	1 cut(s)	34
CviAII	CATG	2 cut(s)	124, 165
CviJI	RGCY	2 cut(s)	132, 191
CviKI_1	RGCY	2 cut(s)	132, 191
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	127, 168
FaiI	YATR	6 cut(s)	90, 125, 153, 166, 209, 221
FaqI	GGGAC	2 cut(s)	75, 134
FatI	CATG	2 cut(s)	123, 164
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	2 cut(s)	112, 124
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
Hin1II	CATG	2 cut(s)	127, 168
HinfI	GANTC	2 cut(s)	18, 82
HpyAV	CCTTC	1 cut(s)	32
HpyCH4V	TGCA	5 cut(s)	28, 77, 177, 207, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 34
Hsp92II	CATG	2 cut(s)	127, 168
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	2 cut(s)	177, 201
Lsp1109I	GCAGC	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	30, 196
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MluCI	AATT	2 cut(s)	49, 72
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	11, 34
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	127, 168
NmuCI	GTSAC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	27
SetI	ASST	3 cut(s)	134, 203, 226
SfcI	CTRYAG	1 cut(s)	26
SgeI	CNNG	7 cut(s)	27, 80, 136, 177, 204, 214, 228
Sse9I	AATT	2 cut(s)	49, 72
StyI	CCWWGG	1 cut(s)	164
TaqI	TCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	49, 72
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	39
XapI	RAATTY	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.