Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8286709.1

Orthogroup ID

OG0014685

Physical Location & Seq

Genomic Coordinates Reverse (-)

224 .. 821

Gene Structure 598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8286709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgcttcttctattggagactgcaatggctgcagatatactcttaaattctgactgggaaaaggatctcccctatgaccctactggaaagttcaatgatttcagagattttgtggagtcaaacttcgacatgttcaagtggataggcttgctgatcatcttagctcagggtttttcgatcttattggccacggctttaaggtcgattgggccagagcaagtatcaaactgtgacagtgatgaagagtatgccccaacaagagtcccactcatgaaccatatcgttcagccaccagaatacattgttggtgccaagaatagcagtaactggaatttgaacaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

114

Amino Acids

12.91

Weight (kDa)

4.35

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04940 FvH4_3g04940
malus_domestica	MD05G1314500.v1.1 MD10G1295800.v1.1
prunus_persica	Prupe.4G044700_v2.0.a1
pyrus_communis	pycom05g29240 pycom10g24840
rosa_chinensis	RchiOBHm_Chr5g0008101
rosa_laevigata	RLG00000031536
rosa_multiflora	Rmu_co8286709.1_g000001 Rmu_sc0001626.1_g000004 Rmu_sc0022023.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068380
rosa_samantha	Rh5AG061500 Rh5CG068400 Rh5DG057400
rosa_wichuraiana	Rw5G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	46, 331
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	94, 136, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	327
AoxI	GGCC	2 cut(s)	186, 209
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	46, 331
AspS9I	GGNCC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	16
BceAI	ACGGC	1 cut(s)	207
BclI	TGATCA	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	252, 284
Bpu10I	CCTNAGC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	189
Bse1I	ACTGG	3 cut(s)	59, 88, 332
Bse3DI	GCAATG	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	189
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	3 cut(s)	59, 88, 332
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	188, 211
BshNI	GGYRCC	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	188, 211
Bsp143I	GATC	3 cut(s)	64, 153, 177
BspANI	GGCC	2 cut(s)	188, 211
BspCNI	CTCAG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	3 cut(s)	59, 88, 332
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	64, 153, 177
Bst4CI	ACNGT	2 cut(s)	230, 236
Bst6I	CTCTTC	1 cut(s)	237
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	160, 165
BstDSI	CCRYGG	1 cut(s)	189
BstKTI	GATC	3 cut(s)	67, 156, 180
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	3 cut(s)	64, 153, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	188, 211
BtgI	CCRYGG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	149
CaiI	CAGNNNCTG	1 cut(s)	327
CciI	TCATGA	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	209
CviAII	CATG	2 cut(s)	130, 271
CviJI	RGCY	7 cut(s)	29, 147, 164, 188, 194, 211, 289
CviKI_1	RGCY	7 cut(s)	29, 147, 164, 188, 194, 211, 289
DdeI	CTNAG	2 cut(s)	160, 165
DpnI	GATC	3 cut(s)	66, 155, 179
DpnII	GATC	3 cut(s)	64, 153, 177
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
FaeI	CATG	2 cut(s)	133, 274
FaiI	YATR	6 cut(s)	38, 75, 131, 249, 272, 279
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	129, 270
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	188, 211
Hin1II	CATG	2 cut(s)	133, 274
HinfI	GANTC	2 cut(s)	116, 261
Hpy188I	TCNGA	2 cut(s)	52, 104
Hpy188III	TCNNGA	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	230, 236
HpyCH4V	TGCA	2 cut(s)	23, 32
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	160, 165
Hsp92II	CATG	2 cut(s)	133, 274
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	64, 153, 177
LpnPI	CCDG	6 cut(s)	40, 69, 152, 225, 306, 313
Lsp1109I	GCAGC	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	230, 323
MalI	GATC	3 cut(s)	66, 155, 179
MboI	GATC	3 cut(s)	64, 153, 177
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	46, 331
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	125, 270
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	2 cut(s)	44, 197
Msp20I	TGGCCA	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	3 cut(s)	64, 153, 177
NlaIII	CATG	2 cut(s)	133, 274
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	133
PagI	TCATGA	1 cut(s)	270
PciI	ACATGT	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	31
PleI	GAGTC	2 cut(s)	124, 269
PpsI	GAGTC	2 cut(s)	124, 269
PscI	ACATGT	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	34
PstNI	CAGNNNCTG	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	44, 197
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	64, 153, 177
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	2 cut(s)	125, 270
SetI	ASST	2 cut(s)	166, 203
SfcI	CTRYAG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	46, 331
TaaI	ACNGT	2 cut(s)	230, 236
TaqI	TCGA	3 cut(s)	126, 176, 203
TasI	AATT	2 cut(s)	46, 331
Tru1I	TTAA	2 cut(s)	44, 197
Tru9I	TTAA	2 cut(s)	44, 197
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	255, 287
TspRI	CASTG	1 cut(s)	241
XapI	RAATTY	2 cut(s)	46, 331
XceI	RCATGY	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.