Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014685

Physical Location & Seq

Genomic Coordinates Forward (+)

29715550 .. 29717189

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCGGCAACGATTGCAAGAATCTGCCTGCAGTCACTGCTGAAAGCTATGAACTCACTTTTGGGAATGGTTGGAATTGCTATGATTCTGTATGGCCTTTGGATGCTTAGAGTTTGGCTGAGGGACTCTGACGGTTCGCCCTTTGACCATCATAGTGTTGTTCCCCCATGGTTTATATGCACTTCTATTGGCGCCGGTTTTACCGTGTGCATAATAACATGCATAGGTCACGTTGCTGCAAAGTTTACGCATGGCTGTTGCCTCTCTTTTTATATGTTGATCATGTTTTTGCTGCTTCTATTGGAGTTTGCAGCGGCTGCAGATATACTTTTAAATTCAGACTGGGAAAAGGATTTGCCATATGACCGGACAGGAAAGTTCAGTGATTTCAAAGATTTTGTCGAGTCGAAATTGGACATATTTCAGTGGATCGGCTTGTTCATCGTCTTAGCACAGGGTTTATCAATCGTACTAGCCACAGCTCTAAGGTCTGCAGGGCCAAACCAAAGATCCAGCTACGATAGCGACGAAGAGTGTCCCCCGGAGAGACTCCCGCTCATAAATCCTAATGGTCAACCTGCCAAGAACAGTAACTGGAATTCAATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tetraspannin

Protein Analysis

204

Amino Acids

22.55

Weight (kDa)

5.75

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014685)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04940 FvH4_3g04940
malus_domestica	MD05G1314500.v1.1 MD10G1295800.v1.1
prunus_persica	Prupe.4G044700_v2.0.a1
pyrus_communis	pycom05g29240 pycom10g24840
rosa_chinensis	RchiOBHm_Chr5g0008101
rosa_laevigata	RLG00000031536
rosa_multiflora	Rmu_co8286709.1_g000001 Rmu_sc0001626.1_g000004 Rmu_sc0022023.1_g000001
rosa_roxburghii	Rroxscaffold_1G00068380
rosa_samantha	Rh5AG061500 Rh5CG068400 Rh5DG057400
rosa_wichuraiana	Rw5G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	556
AciI	CCGC	3 cut(s)	5, 314, 554
AclWI	GGATC	2 cut(s)	437, 504
AcsI	RAATTY	2 cut(s)	334, 598
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	471
AgsI	TTSAA	2 cut(s)	391, 603
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	3 cut(s)	47, 482, 516
AluI	AGCT	3 cut(s)	47, 482, 516
Alw26I	GTCTC	1 cut(s)	541
AlwI	GGATC	2 cut(s)	437, 504
AlwNI	CAGNNNCTG	3 cut(s)	37, 317, 594
AoxI	GGCC	2 cut(s)	94, 497
ApeKI	GCWGC	4 cut(s)	236, 292, 311, 317
ApoI	RAATTY	2 cut(s)	334, 598
ArsI	GACNNNNNNTTYG	2 cut(s)	384, 416
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	4 cut(s)	223, 279, 304, 323
BccI	CCATC	1 cut(s)	156
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	3 cut(s)	29, 318, 492
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	6, 237, 293, 312, 315, 318
BlsI	GCNGC	6 cut(s)	7, 238, 294, 313, 316, 319
Bme1390I	CCNGG	1 cut(s)	542
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	542
BmrI	ACTGGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	352
Bpu10I	CCTNAGC	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	167, 540
BsaWI	WCCGGW	1 cut(s)	366
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	347, 599
BseDI	CCNNGG	2 cut(s)	167, 540
BseGI	GGATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	347, 599
BseXI	GCAGC	4 cut(s)	223, 279, 304, 323
BshFI	GGCC	2 cut(s)	96, 499
BshNI	GGYRCC	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	195, 367, 542
BslFI	GGGAC	2 cut(s)	137, 522
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	2 cut(s)	137, 522
BsnI	GGCC	2 cut(s)	96, 499
Bsp143I	GATC	3 cut(s)	279, 429, 509
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	3 cut(s)	5, 314, 554
BspANI	GGCC	2 cut(s)	96, 499
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	3 cut(s)	33, 322, 496
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	2 cut(s)	437, 504
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	347, 599
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	167, 540
BssMI	GATC	3 cut(s)	279, 429, 509
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	167
Bst4CI	ACNGT	3 cut(s)	134, 205, 590
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	3 cut(s)	14, 37, 317
BstC8I	GCNNGC	1 cut(s)	29
BstDEI	CTNAG	4 cut(s)	107, 119, 448, 485
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	3 cut(s)	282, 432, 512
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	3 cut(s)	279, 429, 509
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 37, 317, 522
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	540
BstSFI	CTRYAG	3 cut(s)	29, 318, 492
BstV1I	GCAGC	4 cut(s)	223, 279, 304, 323
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BsuRI	GGCC	2 cut(s)	96, 499
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	35
BtsIMutI	CAGTG	3 cut(s)	35, 388, 431
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	29
CaiI	CAGNNNCTG	3 cut(s)	37, 317, 594
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	4 cut(s)	168, 219, 251, 283
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	4 cut(s)	107, 119, 448, 485
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	3 cut(s)	281, 431, 511
DpnII	GATC	3 cut(s)	279, 429, 509
DraI	TTTAAA	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	167
EcoT22I	ATGCAT	1 cut(s)	224
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	4 cut(s)	171, 222, 254, 286
FaqI	GGGAC	2 cut(s)	137, 522
FatI	CATG	4 cut(s)	167, 218, 250, 282
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	6 cut(s)	6, 237, 293, 312, 315, 318
FokI	GGATG	1 cut(s)	115
Fsp4HI	GCNGC	6 cut(s)	6, 237, 293, 312, 315, 318
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	6 cut(s)	6, 237, 293, 312, 315, 318
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	96, 499
HapII	CCGG	3 cut(s)	195, 367, 542
HhaI	GCGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	171, 222, 254, 286
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	1 cut(s)	575
HindII	GTYRAC	1 cut(s)	575
HinfI	GANTC	5 cut(s)	21, 85, 125, 404, 549
HpaII	CCGG	3 cut(s)	195, 367, 542
Hpy166II	GTNNAC	2 cut(s)	246, 575
Hpy188I	TCNGA	2 cut(s)	130, 340
Hpy8I	GTNNAC	2 cut(s)	246, 575
Hpy99I	CGWCG	1 cut(s)	530
HpyCH4III	ACNGT	3 cut(s)	134, 205, 590
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	9 cut(s)	17, 31, 180, 210, 222, 239, 311, 320, 494
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 37, 317, 522
HpyF3I	CTNAG	4 cut(s)	107, 119, 448, 485
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	171, 222, 254, 286
HspAI	GCGC	1 cut(s)	192
KasI	GGCGCC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	279, 429, 509
Lsp1109I	GCAGC	4 cut(s)	223, 279, 304, 323
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	33, 227, 590
MalI	GATC	3 cut(s)	281, 431, 511
MbiI	CCGCTC	1 cut(s)	556
MboI	GATC	3 cut(s)	279, 429, 509
MboII	GAAGA	1 cut(s)	542
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	4 cut(s)	75, 334, 410, 598
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	3 cut(s)	119, 413, 543
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	2 cut(s)	114, 272
Mph1103I	ATGCAT	1 cut(s)	224
MseI	TTAA	1 cut(s)	332
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	3 cut(s)	195, 367, 542
MspR9I	CCNGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	4 cut(s)	14, 37, 317, 522
NarI	GGCGCC	1 cut(s)	192
NciI	CCSGG	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	3 cut(s)	279, 429, 509
NlaIII	CATG	4 cut(s)	171, 222, 254, 286
NlaIV	GGNNCC	1 cut(s)	193
NmuCI	GTSAC	2 cut(s)	33, 227
NsiI	ATGCAT	1 cut(s)	224
NspI	RCATGY	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	21, 85
PkrI	GCNGC	6 cut(s)	7, 238, 294, 313, 316, 319
PleI	GAGTC	3 cut(s)	119, 412, 543
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	3 cut(s)	119, 412, 543
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	3 cut(s)	33, 322, 496
PstNI	CAGNNNCTG	3 cut(s)	37, 317, 594
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	6 cut(s)	6, 237, 293, 312, 315, 318
Sau3AI	GATC	3 cut(s)	279, 429, 509
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	3 cut(s)	119, 413, 543
ScrFI	CCNGG	1 cut(s)	542
SetI	ASST	7 cut(s)	49, 229, 234, 484, 491, 518, 580
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	3 cut(s)	29, 318, 492
SfoI	GGCGCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	4 cut(s)	75, 334, 410, 598
SsiI	CCGC	3 cut(s)	5, 314, 554
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	134, 205, 590
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	402, 407
TasI	AATT	4 cut(s)	75, 334, 410, 598
TauI	GCSGC	2 cut(s)	8, 317
TfiI	GAWTC	2 cut(s)	21, 85
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TscAI	CASTG	3 cut(s)	42, 388, 431
TseFI	GTSAC	2 cut(s)	33, 227
TseI	GCWGC	4 cut(s)	236, 292, 311, 317
Tsp45I	GTSAC	2 cut(s)	33, 227
TspDTI	ATGAA	2 cut(s)	65, 430
TspRI	CASTG	3 cut(s)	42, 388, 431
XapI	RAATTY	2 cut(s)	334, 598
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.